!LAUNCH: crac -i ${abs_top_builddir:-../..}/test_f/bug/bug-18793-genome -r bug-18793-read.fa -k 22 -o ${abs_top_builddir:-../..}/test_f/bug/bug-18793.sam --detailed-sam --reads-index GKARRAYS
!OUTPUT_FILE: ${abs_top_builddir:-../..}/test_f/bug/bug-18793.sam
!OUTPUT_DIR: ${abs_top_builddir:-../..}/test_f/bug

$The first two reads (NH:i:1) 
2:NH:i:1
$The last read (NH:i:2)
1:NH:i:2
