!LAUNCH: crac -i ${abs_top_builddir:-../..}/test_f/bug/bug-2015-12-08-genome -r bug-2015-12-08-read1.fa bug-2015-12-08-read2.fa -k 22 -o ${abs_top_builddir:-../..}/test_f/bug/bug-2015-12-08.sam --detailed-sam --reads-index GKARRAYS
!OUTPUT_FILE: ${abs_top_builddir:-../..}/test_f/bug/bug-2015-12-08.sam
!OUTPUT_DIR: ${abs_top_builddir:-../..}/test_f/bug

$The first read should map
1:read.*chr.* 34M 

$The second read should map too
1:read.*M96262.* 22M 
