Package: cnvkit
Version: 0.9.13-2
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 94987
Depends: python3-biopython (>> 1.85), python3-matplotlib (>> 3.9), python3-numpy, python3-pandas (>> 2.2.3), python3-pomegranate (>= 1.0), python3-pyfaidx (>> 0.8.1.3), python3-pyparsing, python3-pysam (>> 0.23.0), python3-reportlab, python3-scipy (>> 1.14.1), python3-sklearn, python3:any, r-bioc-dnacopy
Section: science
Priority: optional
Homepage: https://cnvkit.readthedocs.org
Description: Copy number variant detection from targeted DNA sequencing
 A command-line toolkit and Python library for detecting copy number variants
 and alterations genome-wide from targeted DNA sequencing. It is designed for
 use with hybrid capture, including both whole-exome and custom target panels,
 and short-read sequencing platforms such as Illumina and Ion Torrent.
