cnvkit (0.9.13-2) unstable; urgency=medium

  * Team upload.
  * Conditionally skip tests requiring more CPUs than available.
  * Drop "Rules-Requires-Root: no" (default).
  * Fine-tune salsa-ci.yml.

 -- Santiago Vila <sanvila@debian.org>  Wed, 03 Jun 2026 23:50:00 +0200

cnvkit (0.9.13-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.7.4 (routine-update)
  * debputy lint --auto-fix (routine-update)
  * Refreshed patches.
  * d/control: needs pomegranate v1.x+.
  * d/control: only build for the default version of Python, to match
    pomegranate/pytorch.
  * d/install: there is not a scripts directory anymore.
  * Cherry-picked patch from upstream to fix the tests.
  * Update watch file format version to 5.
  * Use GitHub template in watch file instead of explicit
    Source/Matching-Pattern.

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 18 May 2026 18:23:24 +0200

cnvkit (0.9.12-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.7.0 (routine-update)
  * Removed spelling patch, it was applied upstream. Remaining patches
    were refreshed.
  * d/control: build-dep on the new python3-pomegranate that supports
    numpy 2.x.
  * Include patch from upstream for numpy 2.x support.
  * d/{install,rules,pybuild.testfiles}: simplify and modernize
  * Add my own patch to fix one last numpy 2.x issue: Use `np.bytes_`
    instead of `np.string_`.
  * d/patches/controldir: fix link to the Debian bug.

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 06 Feb 2025 15:23:25 +0100

cnvkit (0.9.10-2) unstable; urgency=medium

  * No-change rebuild of the package from experimental for unstable.

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 08 Apr 2024 10:42:20 +0200

cnvkit (0.9.10-2~0exp) experimental; urgency=medium

  * Test "Arch: all" upload to experimental

  * d/control: the binary package is architecture independent.
  * d/patches/spelling: forwarded upstream.
  * d/control: build the PEP-517 way with pybuild-plugin-pyproject.
  * d/control: also run the built-in tests as autopkgtests.
  * d/rules: move items into d/clean.
  * d/tests: skip-not-installable for s390x and others where python3-
    pysam isn't available.
  * d/control: add riscv64 to the arch list.

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 05 Mar 2024 10:11:04 +0100

cnvkit (0.9.10-1) unstable; urgency=medium

  * Team upload.

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Drop Build-Depends python3-future
    Closes: #1059947
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Use secure URI in Homepage field.

  [ Nilesh Patra ]
  * Add patch to ignore test warnings

 -- Andreas Tille <tille@debian.org>  Fri, 05 Jan 2024 16:18:13 +0100

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog cnvkit`.
