cnvkit (0.9.12-1build1) resolute; urgency=medium

  * No-change mass rebuild for Ubuntu 26.04 (LP: #2132257)

 -- Graham Inggs <ginggs@ubuntu.com>  Wed, 14 Jan 2026 21:11:37 +0000

cnvkit (0.9.12-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.7.0 (routine-update)
  * Removed spelling patch, it was applied upstream. Remaining patches
    were refreshed.
  * d/control: build-dep on the new python3-pomegranate that supports
    numpy 2.x.
  * Include patch from upstream for numpy 2.x support.
  * d/{install,rules,pybuild.testfiles}: simplify and modernize
  * Add my own patch to fix one last numpy 2.x issue: Use `np.bytes_`
    instead of `np.string_`.
  * d/patches/controldir: fix link to the Debian bug.

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 06 Feb 2025 15:23:25 +0100

cnvkit (0.9.10-2) unstable; urgency=medium

  * No-change rebuild of the package from experimental for unstable.

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 08 Apr 2024 10:42:20 +0200

cnvkit (0.9.10-2~0exp) experimental; urgency=medium

  * Test "Arch: all" upload to experimental

  * d/control: the binary package is architecture independent.
  * d/patches/spelling: forwarded upstream.
  * d/control: build the PEP-517 way with pybuild-plugin-pyproject.
  * d/control: also run the built-in tests as autopkgtests.
  * d/rules: move items into d/clean.
  * d/tests: skip-not-installable for s390x and others where python3-
    pysam isn't available.
  * d/control: add riscv64 to the arch list.

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 05 Mar 2024 10:11:04 +0100

cnvkit (0.9.10-1) unstable; urgency=medium

  * Team upload.

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Drop Build-Depends python3-future
    Closes: #1059947
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Use secure URI in Homepage field.

  [ Nilesh Patra ]
  * Add patch to ignore test warnings

 -- Andreas Tille <tille@debian.org>  Fri, 05 Jan 2024 16:18:13 +0100

cnvkit (0.9.9-2) unstable; urgency=medium

  * Team Upload.
  * Re-diff patches (refresh)
  * d/rules: do not run tests in parallel

 -- Nilesh Patra <nilesh@debian.org>  Fri, 15 Oct 2021 12:11:06 +0530

cnvkit (0.9.9-1) unstable; urgency=medium

  * Fix watchfile to detect new versions on github (routine-update)
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * watch file standard 4 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 13 Sep 2021 19:06:06 +0200

cnvkit (0.9.8-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * Added symbolic link from /usr/lib/debian-med/bin/cnvkit.py
    to /usr/bin/cnvkit.py

    bcbio explicitly looks in /usr/bin, though.

  [ Michael R. Crusoe ]
  * New upstream version
  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * debian/control: mips64el is not supported by upstream, remove it
    Closes: #962743

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 01 Jan 2021 16:17:10 +0100

cnvkit (0.9.7-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * Refreshed the patches
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 01 Jun 2020 16:19:46 +0200

cnvkit (0.9.6-3) unstable; urgency=medium

  * Don't run the autopkgtests in parallel.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 07 Jan 2020 11:48:23 +0100

cnvkit (0.9.6-2) unstable; urgency=medium

  * Support more architectures (Closes: #942582)
  * Tests pass with the latest python3-pandas. (Closes: #944041)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 13 Nov 2019 18:57:24 +0100

cnvkit (0.9.6-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.0

 -- Steffen Moeller <moeller@debian.org>  Wed, 28 Aug 2019 19:31:59 +0200

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog cnvkit`.
