chromosome	start	end	gene	log2	probes	weight
chr1	10500	121352354	SSU72_CGH,PLCH2,TNFRSF14,PRDM16_CGH,NPHP4_CGH,RPL22,CA6_CGH,MTOR,MFN2_CGH,LRRC38_CGH,KAZN_CGH,SPEN,SDHB,UBR4_CGH,KIF17_CGH,CDC42,ID3,ARID1A,PUM1_CGH,ZBTB8A_CGH,KIAA0319L_CGH,CSF3R,MYCL,CAP1_CGH,HIVEP3_CGH,MPL,PTCH2,MUTYH,FAF1_CGH,CDKN2C,PPAP2B_CGH,DAB1_CGH,JUN,FGGY_CGH,DOCK7_CGH,JAK1,SLC35D1_CGH,LRRC7_CGH,NEGR1_CGH,FPGTTNNI3K_CGH,AK5_CGH,FUBP1,MCOLN3_CGH,BCL10,CLCA4_CGH,LRRC8B_CGH,EVI5_CGH,RPL5,ABCA4_CGH,DPYD,COL11A1_CGH,NTNG1_CGH,CLCC1_CGH,KCND3_CGH,NRAS,FAM46C,WDR3_CGH,NOTCH2	-0.18288	1295	0.734546
chr1	142535934	249240121	PDE4DIP_CGH,TXNIP_CGH,LIX1L_CGH,PEX11B_CGH,ITGA10_CGH,MCL1,CGN_CGH,CKS1B,RIT1,LAMTOR2_CGH,NTRK1;SH2D2A_CGH,NTRK1,NTRK1;NTRK1;NTRK1intron7ENST00,NTRK1;NTRK1intron7ENST00000368,NTRK1;NTRK1intron10ENST0000036,NTRK1;NTRK1intron11ENST0000036,FCRL5_CGH,SPTA1,IFI16_CGH,B4GALT3,SDHC,DDR2,TADA1,MPC2_CGH,TNR_CGH,ASTN1_CGH,ABL2,CEP350_CGH,CACNA1E_CGH,SMG7,C1orf21_CGH,CDC73,CACNA1S_CGH,ELF3,PPP1R12B_CGH,SOX13_CGH,MDM4,IKBKE,IL19_CGH,TRAF5_CGH,SMYD2_CGH,USH2A_CGH,SUSD4_CGH,H3F3A,PRSS38_CGH,C1orf198_CGH,TBCE_CGH,MTR_CGH,CHRM3_CGH,RGS7_CGH,FH,AKT3;SDCCAG8_CGH,AKT3,SMYD3_CGH	-0.0427836	1032	0.749384
chr2	10500	38409938	TPO_CGH,LINC00299_CGH,MBOAT2_CGH,HPCAL1_CGH,MYCN,C2orf43_CGH,ATAD2B_CGH,DNMT3A,DNMT3A_CGH,ASXL2,BRE_CGH,ALK,ALK;ALK;ALKintron18ENST0000038,ALK;ALKintron17ENST00000389048,TTC27_CGH,PRKD3_CGH	-0.0393938	384	0.745816
chr2	38409938	39285956	SOS1	0.657015	32	0.728151
chr2	39294739	91741616	SOS1,MONO27,SLC8A1_CGH,THADA_CGH,EPCAM,MSH2,BAT26;MSH2,MSH6,NRXN1_CGH,GPR75ASB3_CGH,CCDC88A_CGH,FANCL;VRK2_CGH,FANCL,REL,USP34_CGH,XPO1,EHBP1_CGH,ARHGAP25_CGH,PCBP1,SNRPG_CGH,TCF7L1_CGH	0.0111899	481	0.754716
chr2	91741616	92325671	-	5.69646	4	0.670893
chr2	95326671	243188873	LOC442028_CGH,NR24,DUSP2,FAM178B_CGH,AFF3_CGH,LOC100287010_CGH,NCK2_CGH,EDAR_CGH,BUB1_CGH,ANAPC1_CGH,IL36A,PAX8,PAX8;PAX8;PAX8intron10ENST0000,PAX8;PAX8intron9ENST0000042953,PAX8;PAX8intron8ENST0000042953,PAX8_CGH,DPP10_CGH,STEAP3_CGH,GLI2,MAP3K2,NCKAP5_CGH,UBXN4_CGH,CXCR4,THSD7B_CGH,NXPH2_CGH,LRP1B,DKFZp686O1327_CGH,ACVR2A,LYPD6B_CGH,STAM2_CGH,ACVR1,CCDC148AS1_CGH,KCNH7_CGH,CSRNP3_CGH,METTL8_CGH,PDK1,ZAK_CGH,WIPF1_CGH,HOXDAS2_CGH,NFE2L2,PDE11A_CGH,SESTD1_CGH,ITGAV_CGH,STAT4,ANKRD44_CGH,SF3B1,TMEM237_CGH,NBEAL1_CGH,PARD3B_CGH,NDUFS1_CGH,IDH1,CPS1_CGH,ERBB4,IKZF2,SPAG16_CGH,BARD1,XRCC5,IGFBP2_CGH,PAX3,FARSB_CGH,CUL3,NYAP2_CGH,COL4A4_CGH,GIGYF2,INPP5D_CGH,UGT1A7;UGT1A8_CGH;UGT1A8_CGH,UGT1A7;UGT1A8_CGH,UGT1A7,UGT1A8_CGH,AGAP1_CGH,HDAC4_CGH,KIF1A_CGH	-0.0365352	1587	0.742265
chr3	60500	90344618	CNTN4_CGH,GRM7_CGH,FANCD2,VHL,ATP2B2_CGH,RAF1,RAF1;RAF1;RAF1intron7ENST00000,RAF1;RAF1intron7ENST0000025184,RAF1;RAF1intron6ENST0000025184,RAF1;RAF1intron5ENST0000025184,FBLN2_CGH,NR2C2_CGH,RFTN1_CGH,PLCL2_CGH,KCNH8_CGH,NR1D2_CGH,RARB_CGH,ZCWPW2_CGH,RBMS3_CGH,TGFBR2,MLH1,ITGA9_CGH,MYD88,CTNNB1,ZDHHC3_CGH,SETD2,MAP4_CGH,RHOA,DAG1_CGH,DOCK3_CGH,BAP1,NISCH_CGH,PBRM1,WNT5A_CGH,ARHGEF3_CGH,FHIT,ADAMTS9_CGH,MAGI1_CGH,SUCLG2_CGH,MITF,FOXP1,PDZRN3_CGH,CADM2_CGH,VGLL3_CGH,EPHA3	-0.154596	962	0.752347
chr3	93505354	141004649	EPHA6,ABI3BP_CGH,GSK3B,POLQ,IQCB1_CGH,ADCY5_CGH,ITGB5_CGH,MGLL_CGH,GATA2,C3orf37_CGH,EPHB1,STAG1,CLDN18,CLDN18;CLDN18exon5ENST00000183,ARMC8_CGH,MRAS,FOXL2	-0.130913	544	0.723139
chr3	141005149	197961930	ACPL2_CGH,ATR,TRPC1_CGH,MIR548H2_CGH,KCNAB1_CGH,EGFEM1P_CGH,MECOM,MYNN_CGH,TNIK_CGH,NLGN1_CGH,NAALADL2_CGH,TBL1XR1,KCNMB2_CGH,PIK3CA,SOX2,MCF2L2_CGH,KLHL6,EIF4A2,BCL6,TP63,PYDC2,FGF12_CGH,ACAP2_CGH,PAK2_CGH	0.286519	581	0.758986
chr4	10500	49659617	GAK,CRIPAK,FGFR3,FGFR3;FGFR3;FGFR3intron17ENST0,WHSC1,STX18_CGH,TADA2B,SORCS2_CGH,CLNK_CGH,LOC441009_CGH,LDB2_CGH,KCNIP4_CGH,STIM2_CGH,C4orf19_CGH,TMEM156_CGH,RBM47_CGH,CNGA1_CGH	-0.221023	432	0.731147
chr4	52660617	191043776	SCFD2_CGH,PDGFRA,KIT,BAT25;KIT,KDR,EPHA5,UGT2A1_CGH,CDKL2_CGH,ANXA3_CGH,MAPK10_CGH,FAM190A_CGH,BMPR1B_CGH,STPG2_CGH,MTTP_CGH,PPP3CA_CGH,NFKB1_CGH,TET2,LEF1,RPL34AS1_CGH,ELOVL6_CGH,ANK2_CGH,SPRY1,LARP1B_CGH,MAML3_CGH,LRBA_CGH,FBXW7,KIAA0922_CGH,MARCH1_CGH,SPOCK3_CGH,PALLD_CGH,AADAT_CGH	-0.212203	1160	0.7701
chr5	10500	46252463	SDHA,TERT,LPCAT1_CGH,ADCY2_CGH,FAM134B_CGH,CDH18_CGH,CDH12_CGH,CDH9_CGH,DROSHA_CGH,IL7R,NIPBL,WDR70_CGH,LIFR,RICTOR,C5orf34_CGH,FGF10	0.11968	501	0.738532
chr5	49406141	180904760	ANKRD55_CGH,MAP3K1,PDE4D_CGH,ADAMTS6_CGH,MAST4_CGH,PIK3R1,POC5_CGH,SERINC5_CGH,SSBP2_CGH,XRCC4_CGH,RASA1,GPR98_CGH,FAM172A_CGH,MCTP1,CAST_CGH,STARD4AS1_CGH,APC,D5S346,MCC_CGH,COMMD10_CGH,DMXL1_CGH,PRR16_CGH,LOC100505841_CGH,ALDH7A1,SLC12A2_CGH,ADAMTS19_CGH,RAD50,IL4_CGH,SKP1_CGH,SPOCK1_CGH,CTNNA1,RELL2_CGH,SPRY4,ARHGAP26_CGH,LARS,LARS;LARS_CGH,JAKMIP2AS1_CGH,CSF1R,PDGFRB,PDGFRB;PDGFRB;PDGFRBintron10EN,PDGFRB;PDGFRBintron9ENST000002,GRIA1_CGH,SGCD_CGH,EBF1,NPM1,CREBRF_CGH,LOC643201_CGH,FGFR4,NSD1,ZNF354C_CGH,FLT4	-0.0432374	1404	0.734574
chr6	60500	40065529	IRF4,NQO2_CGH,NRN1_CGH,ATXN1,ATXN1_CGH,TPMT,CDKAL1_CGH,LRRC16A_CGH,HIST1H3B,HIST1H1C,HIST1H2BD,STK19,PACSIN1_CGH,FANCE,MAPK14_CGH,CDKN1A,PIM1	0.143911	324	0.752919
chr6	40065529	45762311	FOXP4,TFEB;TFEB;TFEBintron8ENST00000,TFEB;TFEBintron4ENST0000023032,TFEB;TFEBintron3ENST0000023032,TFEB,CCND3,CCND3_CGH,XPO5_CGH,NFKBIE,SUPT3H_CGH	1.46326	99	0.708829
chr6	45762311	58779666	CYP39A1_CGH,PTCHD4_CGH,PKHD1,ICK,MLIP_CGH,ZNF451_CGH	0.164554	196	0.732698
chr6	61880666	171054567	EYS_CGH,OGFRL1_CGH,KCNQ5_CGH,BCKDHB_CGH,ME1_CGH,GABRR2_CGH,MAP3K7,EPHA7,KLHL32_CGH,POU3F2,GRIK2_CGH,PRDM1,FOXO3,CDK19_CGH,FYN,WISP3,LAMA4_CGH,ROS1,ROS1;ROS1;ROS1intron34ENST0000,ROS1;ROS1intron34ENST000003685,ROS1;ROS1intron33ENST000003685,ROS1;ROS1intron32ENST000003685,ROS1;ROS1intron31ENST000003685,ROS1;ROS1intron30ENST000003685,SLC35F1_CGH,RSPO3_CGH,PTPRK,SAMD3_CGH,ENPP3_CGH,SGK1,MYB,MYB;MYB;MYBintron9ENST00000367,MYB;MYBintron9ENST00000367814,MYB;MYBintron9ENST00000367814;,MYB;MYBintron10ENST00000367814,MYB;MYBintron11ENST00000367814,MYB;MYBintron13ENST00000367814,PDE7B_CGH,MAP3K5,TNFAIP3,ADGB_CGH,LATS1_CGH,ESR1,RGS17_CGH,ARID1B,ARID1B_CGH,TMEM181_CGH,IGF2R,IGF2R_CGH,SLC22A2_CGH,PARK2_CGH,PACRG_CGH	0.126831	1257	0.757151
chr7	10500	53409505	CARD11,PMS2,AIMP2_CGH,RAC1,COL28A1_CGH,HDAC9,STEAP1B_CGH,NFE2L3,HOXA3,JAZF1,JAZF1;JAZF1;JAZF1intron3ENST00,JAZF1;JAZF1intron3ENST00000283,CREB5_CGH,SCRN1_CGH,FKBP9,C7orf10_CGH,INHBA,GLI3_CGH,HECW1_CGH,CCM2_CGH,IKZF1	0.454854	676	0.750108
chr7	53409505	58053831	EGFR	1.84256	64	0.703182
chr7	61054831	159128163	CCT6P3_CGH,GTF2I,HIP1_CGH,MAGI2_CGH,HGF,PCLO_CGH,GRM3,CROT_CGH,ABCB1,ZNF804B_CGH,GTPBP10_CGH,MTERF_CGH,CDK6,DYNC1I1,TRRAP,CYP3A5,CYP3A4,EPHB4,MUC12_CGH,CUX1,SRPK2_CGH,PIK3CG,NRCAM_CGH,IMMP2L_CGH,C7orf60_CGH,MET;MET_intron_1_ENST000003977,MET,MET;MET;METintron13ENST0000039,MET;METintron14ENST00000397752,MET;METintron15ENST00000397752,ASZ1_CGH,KCND2_CGH,POT1,POT1;POT1_CGH,SND1_CGH,SMO,AHCYL2_CGH,PLXNA4_CGH,EXOC4_CGH,TBXAS1_CGH,BRAF,BRAF;BRAF;BRAFintron10ENST0000,BRAF;BRAFintron10ENST000002886,BRAF;BRAFintron9ENST0000028860,BRAF;BRAFintron8ENST0000028860,BRAF;BRAFintron 7ENST000002886,TMEM178B_CGH,PRSS1,EPHB6,TAS2R60,CNTNAP2_CGH,EZH2,LRRC61_CGH,RHEB,PRKAG2_CGH,KMT2C,XRCC2,SHH,PTPRN2_CGH	0.474429	1411	0.734239
chr8	10500	38459285	DLGAP2_CGH,CSMD1_CGH,TNKS,RP1L1_CGH,FAM66D_CGH,SGCZ_CGH,CSGALNACT1_CGH,BIN3_CGH,EGR3,PTK2B,EXTL3_CGH,DUSP4,MIR548O2_CGH,WRN,NRG1_CGH,ZNF703,GPR124,ASH2L,FGFR1,FGFR1;FGFR1;FGFR1intron9ENST00,FGFR1;FGFR1intron9ENST00000447	-0.533167	467	0.719303
chr8	38459285	43679112	TACC1,ADAM32_CGH,ZMAT4_CGH,KAT6A	0.253664	90	0.736686
chr8	46839387	146303522	PRKDC,SNTG1_CGH,PXDNL_CGH,SOX17,TOX_CGH,RAB2A_CGH,MYBL1,MYBL1;MYBL1;MYBL1intron9ENST00,MYBL1;MYBL1intron9ENST00000522,MYBL1_CGH,SULF1_CGH,KCNB2_CGH,PKIA_CGH,RALYL_CGH,NBN,RUNX1T1,LINC00535_CGH,MATN2_CGH,VPS13B_CGH,FBXO43,SNX31,RIMS2_CGH,ZFPM2_CGH,CSMD3_CGH,LINC00536_CGH,RAD21,MTBP_CGH,SQLE_CGH,MYC,PVT1_CGH,ADCY8_CGH,KHDRBS3_CGH,EPPK1,BOP1_CGH	0.624158	926	0.751332
chr9	10500	47317179	SMARCA2,SLC1A1_CGH,JAK2,JAK2;JAK2;JAK2intron8ENST00000,JAK2;JAK2intron8ENST0000038165,JAK2;JAK2intron9ENST0000038165,JAK2;JAK2intron10ENST000003816,JAK2;JAK2intron11ENST000003816,JAK2;JAK2intron12ENST000003816,JAK2;JAK2intron13ENST000003816,JAK2;JAK2intron14ENST000003816,JAK2;JAK2intron15ENST000003816,JAK2;JAK2intron16ENST000003816,CD274,PDCD1LG2,PTPRD,LOC389705_CGH,BNC2_CGH,CDKN2A,CDKN2B,IFT74_CGH,LINGO2_CGH,FANCG,PAX5,POLR1E_CGH,PentaC	0.12065	528	0.741868
chr9	65468179	70506035	LOC642236_CGH	1.41584	26	0.668834
chr9	70557035	141152931	PGM5_CGH,FAM189A2_CGH,TRPM3,TRPM3_CGH,PRUNE2_CGH,GNAQ,NTRK2,NTRK2;NTRK2;NTRK2intron13ENST0,ROR2_CGH,WNK2_CGH,C9orf3_CGH,FANCC,PTCH1,HSD17B3_CGH,KLF4,COL27A1_CGH,TNC,ASTN2_CGH,TLR4,DAB2IP_CGH,STRBP_CGH,NR6A1_CGH,PPP6C,HSPA5,CDK9_CGH,ABL1,TSC1,SARDH_CGH,OLFM1_CGH,GPSM1,NOTCH1	0.0870027	817	0.724466
chr10	60500	39083665	ADARB2_CGH,IL15RA_CGH,GATA3,UPF2_CGH,BEND7_CGH,PTER_CGH,KIAA1217_CGH,GPR158_CGH,MPP7_CGH,SVIL_CGH,PARD3_CGH	0.263586	283	0.777671
chr10	42597187	135524247	LOC441666_CGH,RET,RET;RET;RETintron10ENST0000035,RET;RETintron10ENST00000355710,A1CF_CGH,IPMK_CGH,M1_CGH,ARID5B,CTNNA3_CGH,CCAR1_CGH,CDH23_CGH,FAM149B1_CGH,C10orf11_CGH,ZMIZ1_CGH,NRG3_CGH,WAPAL,PTEN,KIF20B_CGH,PCGF5_CGH,TNKS2,PLCE1_CGH,CYP2C8;CYP2C8_CGH,CYP2C8,ENTPD1_CGH,HPSE2_CGH,SUFU,NT5C2,SORCS3_CGH,SMC3,RBM20_CGH,SHOC2,TCF7L2,ATRNL1_CGH,INPP5F_CGH,FGFR2,FGFR2;FGFR2;FGFR2intron17ENST0,FGFR2;FGFR2intron17ENST0000035,UROS_CGH,DOCK1_CGH,KNDC1_CGH	-0.195041	935	0.737292
chr11	60500	51593705	HRAS,MOB2_CGH,NAP1L4_CGH,NUP98,OLFML1_CGH,NRIP3_CGH,PTH_CGH,RRAS2,SERGEF_CGH,NAV2_CGH,NELL1_CGH,FANCF,IMMP1L_CGH,WT1,QSER1_CGH,ELF5_CGH,LDLRAD3_CGH,LRRC4C_CGH,TTC17_CGH,MAPK8IP1,AMBRA1_CGH,PTPRJ_CGH	-0.00764995	450	0.740795
chr11	55028465	134946016	OR5L1,FADS1_CGH,SF1_CGH,MEN1,MALAT1,RELA,RELA;RELAintron1ENST0000040624,YIF1A_CGH,GSTP1,ALDH3B1_CGH,CCND1,FGF19,FGF4,FGF3,SHANK2_CGH,CLPB_CGH,MRPL48_CGH,C11orf30,TSKU_CGH,GAB2,GAB2_CGH,DLG2_CGH,SYTL2_CGH,GRM5_CGH,MRE11A,AMOTL1_CGH,MAML2_CGH,YAP1,YAP1_CGH,BIRC3,GUCY1A2,ACAT1_CGH,ATM,SDHD,ZBTB16_CGH,KMT2A,CBL,TRIM29_CGH,SORL1_CGH,CLMP_CGH,SIAE_CGH,CHEK1,ETS1,NTM_CGH	0.069297	912	0.737595
chr12	60500	34688391	KDM5A,ERC1_CGH,TULP3_CGH,CCND2,FGF23,FGF6,ANO2_CGH,CHD4,CD163L1,A2ML1_CGH,ETV6,ETV6;ETV6;ETV6intron4ENST00000,ETV6;ETV6intron4ENST0000039637,ETV6;ETV6intron5ENST0000039637,LRP6,CDKN1B,MGST1_CGH,PLEKHA5_CGH,SOX5_CGH,KRAS,CCDC91_CGH,H3F3C,PKP2_CGH	-0.0417687	509	0.760412
chr12	37857194	41381084	LRRK2	0.532219	77	0.732318
chr12	41381084	42751263	-	-0.702994	10	0.782284
chr12	42751263	46297549	NELL2_CGH,ARID2	0.427112	58	0.737
chr12	46298049	49415972	ARID2,COL2A1,KMT2D	0.892612	78	0.642964
chr12	49416026	49445168	KMT2D	0.187923	72	0.682093
chr12	49445168	54019272	KMT2D,TUBA1B_CGH,DIP2B_CGH,ATF1,ATF1;ATF1;ATFintron4ENST000002,ATF1;ATFintron4ENST00000262053,ACVR1B,ESPL1	0.667131	111	0.724273
chr12	54019772	58964599	ATF7_CGH,ERBB3,BAZ2A_CGH,STAT6,STAT6;STAT6;STAT6intron19ENST0,STAT6;STAT6intron13ENST0000030,STAT6;STAT6intron12ENST0000030,STAT6;STAT6intron2ENST00000300,STAT6intron1ENST00000300134,GLI1,DDIT3,DDIT3;DDIT3;DDIT3intron3ENST00,DDIT3intron1ENST00000551116;DD,DDIT3intron1ENST00000551116,CDK4	-0.508038	144	0.761788
chr12	58964599	111855415	SLC16A7_CGH,SRGAP1_CGH,MDM2,NAV3,SYT1_CGH,PTPRQ_CGH,LRRIQ1_CGH,CEP290_CGH,DUSP6,LUM_CGH,UHRF1BP1L_CGH,MYBPC1_CGH,CHST11_CGH,NUAK1_CGH,BTBD11_CGH,USP30_CGH,PPTC7_CGH	-0.0896974	456	0.770494
chr12	111855915	112942596	SH2B3,NAA25_CGH,PTPN11	-0.550027	41	0.627397
chr12	112943096	133841395	TBX3,MAP1LC3B2_CGH,HNF1A,RSRC2_CGH,ZNF664FAM101A_CGH,BAT59,TMEM132C_CGH,POLE,ZNF605_CGH	-0.157547	224	0.730985
chr13	19020500	115109378	ANKRD26P3_CGH,CRYL1_CGH,CDK8,FLT3,FLT1,TEX26AS1_CGH,BRCA2,N4BP2L2_CGH,PDS5B,RFC3_CGH,NBEA_CGH,ALG5_CGH,FOXO1;FOXO1;FOXO1intron1ENST00,FOXO1;FOXO1intron1ENST00000379,EPSTI1_CGH,RB1,PCDH9_CGH,KLHL1_CGH,EDNRB,SPRY2,SLITRK6,GPC6_CGH,FARP1_CGH,CLYBL_CGH,FGF14,FAM155A_CGH,MYO16_CGH,IRS2,COL4A2_CGH,GRTP1_CGH	0.788462	1265	0.763687
chr14	19000500	20707689	-	1.44171	20	0.568835
chr14	20707689	106508850	AJUBA,NR21,BCL2L2,THTPA_CGH,STXBP6_CGH,NOVA1_CGH,MIR548AI_CGH,AP4S1_CGH,AKAP6_CGH,NFKBIA,RALGAPA1_CGH,NKX21,SLC25A21_CGH,FOXA1,MDGA2_CGH,SOS2,ATL1_CGH,NID2_CGH,SOCS4_CGH,C14orf37_CGH,CCDC175_CGH,SLC38A6_CGH,HIF1A,SYNE2_CGH,ESR2,HSPA2,FUT8_CGH,GPHN_CGH,MAP3K9,SIPA1L1_CGH,LTBP2_CGH,IFT43_CGH,SPTLC2_CGH,NRXN3_CGH,CEP128_CGH,TSHR,FOXN3_CGH,RPS6KA5_CGH,DDX24_CGH,DICER1,GLRX5_CGH,TCL1A,BCL11B,HSP90AA1,KLC1_CGH;XRCC3,XRCC3,AKT1	-0.216274	857	0.738805
chr14	106509925	107289040	-	1.34258	5	0.717409
chr15	20000500	102520892	NBEAP1_CGH,LOC727924_CGH,HERC2_CGH,TJP1_CGH,TRPM1,NUTM1,NUTM1;NUTM1;NUTM1intron2ENST00,ATPBD4AS1_CGH,CGH;SPRED1,SPRED1,FSIP1,PAK6_CGH,RAD51,LTK,MGA,MGA_CGH,EPB42_CGH,SEMA6D_CGH,GALK2_CGH,SPPL2A_CGH,MYO5C_CGH,WDR72_CGH,RAB27A_CGH,RORA_CGH,TLN2_CGH,CSNK1G1_CGH,MAP2K1,SMAD3,AAGAB_CGH,ANP32A_CGH,THSD4_CGH,NEO1_CGH,SIN3A,LOC729911_CGH,BCL2A1,FAM108C1_CGH,EFTUD1_CGH,AGBL1_CGH,NTRK3,NTRK3;NTRK3;NTRK3intron13ENST0,NTRK3;NTRK3intron13ENST0000039,NTRK3;NTRK3intron12ENST0000039,NTRK3;NTRK3intron11ENST0000039,NTRK3;NTRK3intron10ENST0000039,RHCG_CGH,IDH2,BLM,PRC1_CGH,C15orf32_CGH,LOC145820_CGH,FAM169B_CGH,IGF1R,ADAMTS17_CGH,PCSK6_CGH	0.171236	1223	0.761548
chr16	60500	27312901	AXIN1,CLCN7_CGH,TSC2,TRAF7,PDPK1,KREMEN2_CGH,CREBBP,DNAJA3_CGH,RBFOX1_CGH,USP7,USP7_CGH,GRIN2A,ATF7IP2_CGH,SOCS1,PDXDC1_CGH,TMC5_CGH,DNAH3_CGH,PALB2	-0.219106	414	0.662067
chr16	27312901	35285301	BOLA2B_CGH,INO80E_CGH,ZNF668,FUS,FUS;FUSintron5ENST00000254108,FUS;FUSintron5ENST00000254108;,FUS;FUSintron6ENST00000254108;,FUS;FUSintron7ENST00000254108	0.837602	92	0.719092
chr16	46386301	90294253	ANKRD26P1_CGH,CYLD,TOX3_CGH,FTO_CGH,NUP93,NLRC5_CGH,NDRG4_CGH,CDH5,CBFB,CBFB;CBFBintron5ENST0000041291,CTCF,CDH1,TMCO7_CGH,PHLPP2,PKD1L3_CGH,ZFHX3,WDR59_CGH,CNTNAP4_CGH,VAT1L,MAF,NECAB2_CGH,FANCA;ZNF276_CGH,FANCA,DEF8_CGH	-0.125312	590	0.735606
chr17	500	22262506	YWHAE;YWHAE;YWHAEintron5ENST00,YWHAE,USP6;USP65UTRexonintronENST000,USP6,WSCD1_CGH,FXR2_CGH,TP53_3UTR_rs78378222,TP53,AURKB,NTN1_CGH,MAP2K4,HS3ST3A1_CGH,NCOR1,FLCN,GID4,DRG2_CGH	-0.345439	343	0.703676
chr17	25263506	81194710	NSRP1_CGH,NF1,SUZ12,RHOT1,ASIC2_CGH,RAD51D,ZNHIT3_CGH,DDX52_CGH,FBXL20_CGH,CDK12,ERBB2,IKZF3,RARA,STAT5B,STAT5A,STAT3,EZH1,BRCA1,DCAKD_CGH,CRHR1_CGH,GOSR2_CGH,SKAP1_CGH,HOXB13,SPOP,COL1A1,VEZF1,MIR142,RNF43,RAD51C,PPM1E_CGH,PPM1D,BRIP1,TANC2_CGH,CD79B,GNA13,AXIN2,PRKCA,PRKCA_CGH,PRKCA;PRKCA;PRKCAintron8ENST00,PRKAR1A,MAP2K6_CGH,SOX9,LINC00673_CGH,CASKIN2_CGH,H3F3B,SRSF2,DNAH17_CGH,RPTOR,NPLOC4_CGH	0.0842755	1096	0.704515
chr18	10500	15410398	C18orf56_CGH,LPIN2_CGH,L3MBTL4_CGH,C18orf1_CGH	0.136451	110	0.771299
chr18	18511398	48002209	ROCK1_CGH,SS18;SS18;SS18intron10ENST0000,SS18,CDH2,FAM59A_CGH,NOL4_CGH,INO80C_CGH,KIAA1328_CGH,RIT2_CGH,SETBP1,EPG5_CGH,SMAD2,DYM_CGH	0.0547283	311	0.763398
chr18	48002709	78016748	SMAD4,DCC,RAB27B_CGH,TCF4,LMAN1_CGH,CDH20,TNFRSF11A_CGH,BCL2,DOK6_CGH,NETO1_CGH,PARD6G_CGH	-0.677928	324	0.737719
chr19	203736	1615853	STK11,TCF3	0.295854	24	0.521043
chr19	1619125	14063475	TCF3,DOT1L,TLE2_CGH,GNA11,GIPC3,MAP2K2,LOC100128568_CGH,INSR,ARHGEF18_CGH,MUC16_CGH,CDC37_CGH,KEAP1,SMARCA4,CALR,CACNA1A_CGH,PODNL1_CGH	-0.23651	256	0.579822
chr19	14063975	24475383	PRKACA,PRKACA;PRKACA;PRKACAintron1ENS,NOTCH3,BRD4,EPS15L1_CGH,JAK3,SLC5A5_CGH,PIK3R2,MEF2B,GATAD2A_CGH,RPSAP58_CGH	0.363718	224	0.65025
chr19	28202052	45018805	CCNE1,TSHZ3,CEBPA,KMT2B,RYR1_CGH,ZNF546_CGH,AKT2,PRX,AXL,LOC100505495_CGH,CD79A,GSK3A,CIC,CIC;CIC;CICexon20ENST000002839,CIC;CICexon20ENST00000283928;C	-0.0797366	300	0.657674
chr19	45019305	46346785	CEACAM20_CGH,ERCC2	-0.856966	33	0.559197
chr19	46346785	50918290	CCDC61_CGH,ARHGAP35,RRAS,BCL2L12,POLD1	-0.0972336	86	0.645881
chr19	50918717	50920552	POLD1	-1.47297	6	0.280917
chr19	50921077	59118483	POLD1,LRRC4B_CGH,ZNF615_CGH,PPP2R1A,LOC100128252_CGH,ZNF606_CGH	-0.00536666	77	0.727576
chr20	60500	26319069	SIRPD_CGH,PTPRA_CGH,CRLS1_CGH,PLCB4_CGH,C20orf94_CGH,MACROD2_CGH,KIF16B_CGH,OVOL2_CGH,SLC24A3_CGH,FOXA2,NINL_CGH	-0.205552	197	0.767416
chr20	29420069	62965020	DEFB116_CGH,ASXL1,ITCH_CGH,SRC,PPP1R16B_CGH,MAFB,TOP1,PLCG1,PTPRT,YWHAB_CGH,ELMO2_CGH,PTPN1,TSHZ2,ZNF217,AURKA,VAPB_CGH,GNAS;GNASAS1_CGH,GNAS,CDH4,CDH4_CGH,ARFRP1	0.759259	497	0.694082
chr21	9411693	11187629	-	2.76176	10	0.623977
chr21	14338629	48119395	LIPI_CGH,RBM11_CGH,CHODL_CGH,NCAM2_CGH,RUNX1,RUNX1;RUNX1;RUNX1intron4ENST00,RUNX1;RUNX1intron4ENST00000344,RUNX1;RUNX1intron3ENST00000344,CBR3AS1_CGH,KCNJ6_CGH,ERG,DSCAM_CGH,TMPRSS2,TMPRSS2;TMPRSS2;TMPRSS2intron2,TMPRSS2;TMPRSS2intron2ENST0000,TMPRSS2;TMPRSS2intron1ENST0000,UMODL1_CGH,U2AF1,HSF2BP_CGH	-0.189262	538	0.771859
chr22	16050500	51244066	TPTEP1_CGH,ANKRD62P1PARP4P3_CGH,XKR3_CGH,CECR2_CGH,CLDN5_CGH,CRKL,MAPK1,GUSBP11_CGH,SMARCB1,KIAA1671_CGH,CRYBB1_CGH,TTC28_CGH,CHEK2,EWSR1,EWSR1;EWSR1;EWSR1intron5ENST00,EWSR1;EWSR1intron5ENST00000397,EWSR1;EWSR1intron6ENST00000397,EWSR1;EWSR1intron7ENST00000397,EWSR1;EWSR1intron8ENST00000397,EWSR1;EWSR1intron11ENST0000039,EWSR1;EWSR1intron12ENST0000039,EWSR1;EWSR1intron13ENST0000039,NF2,SYN3_CGH,MB_CGH,MYH9,RAC2,SOX10,APOBEC3G,PDGFB,PDGFB;PDGFB;PDGFBintron1ENST00,TNRC6B_CGH,EP300,DESI1_CGH,XRCC6,CYP2D6,BIK_CGH,LINC00229_CGH,FLJ46257_CGH,CPT1B_CGH	-0.296636	549	0.699943
chrX	60500	57951762	CRLF2,XG_CGH,ARSF_CGH,NLGN4X_CGH,ZRSR2,EIF1AX,LOC100873065_CGH,KLHL15_CGH,DMD_CGH,LANCL3_CGH,BCOR,USP9X,DDX3X,KDM6A,CXorf36_CGH,SLC9A7_CGH,RBM10,ARAF,GATA1,TFE3,TFE3;TFE3;TFE3intron5ENST00000,TFE3;TFE3intron5ENST0000031586,TFE3;TFE3intron1ENST0000031586,KDM5C,SMC1A,PHF8_CGH,SPIN3_CGH	0.554684	702	0.728374
chrX	61931687	155260060	ARHGEF9_CGH,AMER1,AR,EDA_CGH,MED12,ZMYM3,BCYRN1_CGH,TAF1,ERCC6L;PIN4_CGH,FTX_CGH,ATRX,TBX22,DACH2_CGH,PCDH11X_CGH,DIAPH2_CGH,LOC442459_CGH,BTK,BHLHB9_CGH,IL1RAPL2_CGH,AMMECR1_CGH,PAK3,BAT52,ALG13_CGH,HTR2C_CGH,XIAP_CGH,STAG2,BCORL1,HS6ST2_CGH,PHF6,FMR1AS1_CGH,CD99L2_CGH,BAT56,GABRA3_CGH,FAM58A	0.545528	1016	0.735225
chrY	2654563	9626210	TSPY1	0.0928598	45	0.777328
chrY	13199459	28666774	-	-0.0770873	60	0.768993
