ALLEN INSTITUTE

# Source code for bmtk.tests.utils.reports.spike_trains.test_spikes_core

    import pytest
    import numpy as np

    from bmtk.utils.reports.spike_trains import PoissonSpikeGenerator
    from bmtk.utils.reports.spike_trains import SpikeTrains

    def test_psg_fixed():
        psg = PoissonSpikeGenerator(population='test', seed=100)
        psg.add(node_ids=range(10), firing_rate=5.0, times=(0.0, 3.0))
        assert(psg.populations == ['test'])
        assert(np.all(psg.node_ids() == list(range(10))))
        assert(psg.n_spikes() == 143)
        assert(psg.n_spikes(population='test') == 143)
        assert (np.allclose(psg.time_range(), (5.380662350673328, 2986.5205688893295)))

        df = psg.to_dataframe()
        assert(df.shape == (143, 3))

        assert(np.allclose(psg.get_times(node_id=0), [156.7916, 222.0400, 332.5493, 705.1267, 706.0727, 731.9963, 954.1834,
                                                      1303.7542, 1333.1543, 1504.3314, 1948.2045, 1995.1471, 2036.1411,
                                                      2059.0835, 2108.6982, 2877.7935], atol=1.0e-3))

        assert(np.allclose(psg.get_times(node_id=9, population='test'),
                           [23.3176, 241.7332, 390.1951, 428.2215, 1001.0229, 1056.4003, 2424.8442, 2599.6312, 2640.1228,
                            2737.9504, 2780.0140, 2885.8020], atol=1.0e-3))

    def test_psg_variable():
        times = np.linspace(0.0, 3.0, 1000)
        fr = np.exp(-np.power(times - 1.0, 2) / (2*np.power(.5, 2)))*5

        psg = PoissonSpikeGenerator(population='test', seed=100)
        psg.add(node_ids=range(10), firing_rate=fr, times=times)

        assert(psg.populations == ['test'])
        assert(np.all(psg.node_ids() == list(range(10))))
        assert(psg.n_spikes() == 54)
        assert(np.allclose(psg.time_range(), (170.22331575431056, 2004.337420574704)))
        assert(psg.to_dataframe().shape == (54, 3))
        assert(np.allclose(psg.get_times(node_id=0), [268.2470, 519.8341, 963.7072, 1004.7012, 1054.3159, 1388.2418, 1727.0501], atol=1.0e-3))
        assert(np.allclose(psg.get_times(node_id=9), [302.6400,  706.5132, 719.6730, 897.8392, 1192.0589, 1201.5878, 2004.3374], atol=1.0e-3))

    def test_psg_none_seed():
        times = np.linspace(0.0, 3.0, 1000)
        fr = np.exp(-np.power(times - 1.0, 2) / (2*np.power(.5, 2)))*5

        psg0 = PoissonSpikeGenerator(population='test', seed=0)
        psg0.add(node_ids=range(10), firing_rate=fr, times=times)

        psg_none = PoissonSpikeGenerator(population='test', seed=None)
        psg_none.add(node_ids=range(10), firing_rate=fr, times=times)

        assert(psg0.n_spikes() != psg_none.n_spikes() and not np.allclose(psg0.n_spikes(), psg_none.n_spikes()))

    def test_equals():
        st1 = SpikeTrains()
        st1.add_spikes(node_ids=0, population='V1', timestamps=[0.1, 0.2, 0.3, 0.4])
        st1.add_spikes(node_ids=1, population='V1', timestamps=[1.0])

        st2 = SpikeTrains()
        st2.add_spikes(node_ids=1, population='V1', timestamps=[1.0])
        st2.add_spikes(node_ids=0, population='V1', timestamps=[0.3, 0.2, 0.1, 0.4])

        assert(st1 == st2)
        assert(st1 <= st2)
        assert(st1 >= st2)
        assert(not st1 != st2)

    def test_subset():
        st1 = SpikeTrains()
        st1.add_spikes(node_ids=0, population='V1', timestamps=[0.1, 0.2, 0.3, 0.4])
        st1.add_spikes(node_ids=1, population='V1', timestamps=[1.0])

        st2 = SpikeTrains()
        st2.add_spikes(node_ids=1, population='V1', timestamps=[1.0])
        st2.add_spikes(node_ids=0, population='V1', timestamps=[0.3, 0.2, 0.1, 0.4, 0.5])
        st2.add_spike(node_id=2, population='V1', timestamp=0.5)
        st2.add_spikes(node_ids=0, population='V2', timestamps=np.linspace(0.0, 1.0, 11))

        assert(st1 != st2)
        assert(st1 < st2)
        assert(st2 > st1)
        assert(st1 <= st2)
        assert(st2 >= st1)

    if __name__ == '__main__':
        # test_psg_fixed()
        # test_psg_variable()
        test_psg_none_seed()
        # test_equals()
        # test_subset()