Package: biobambam2
Version: 2.0.185+ds-2build1
Architecture: amd64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 57714
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libmaus2-2 (>= 2.0.813+ds), libstdc++6 (>= 14), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://gitlab.com/german.tischler/biobambam2
Description: tools for early stage alignment file processing
 This package contains some tools for processing BAM files, including
 .
   bamsormadup:  parallel sorting and duplicate marking
   bamcollate2:  reads BAM and writes BAM reordered such that alignment
                 or collated by query name
   bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                 marked using the BAM flags field
   bammaskflags: reads BAM and writes BAM while masking (removing) bits
                 from the flags column
   bamrecompress: reads BAM and writes BAM with a defined compression
                  setting. This tool is capable of multi-threading.
   bamsort:       reads BAM and writes BAM resorted by coordinates or
                  query name
   bamtofastq:    reads BAM and writes FastQ; output can be collated
                  or uncollated by query name
