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BamTools::BamReader Member List

This is the complete list of members for BamTools::BamReader, including all inherited members.

BamReader() | BamTools::BamReader |
Close() | BamTools::BamReader |
CreateIndex(const BamIndex::IndexType &type=BamIndex::STANDARD) | BamTools::BamReader |
GetConstSamHeader() const | BamTools::BamReader |
GetErrorString() const | BamTools::BamReader |
GetFilename() const | BamTools::BamReader |
GetHeader() const | BamTools::BamReader |
GetHeaderText() const | BamTools::BamReader |
GetNextAlignment(BamAlignment &alignment) | BamTools::BamReader |
GetNextAlignmentCore(BamAlignment &alignment) | BamTools::BamReader |
GetReferenceCount() const | BamTools::BamReader |
GetReferenceData() const | BamTools::BamReader |
GetReferenceID(const std::string &refName) const | BamTools::BamReader |
HasIndex() const | BamTools::BamReader |
IsOpen() const | BamTools::BamReader |
Jump(int refID, int position=0) | BamTools::BamReader |
LocateIndex(const BamIndex::IndexType &preferredType=BamIndex::STANDARD) | BamTools::BamReader |
Open(const std::string &filename) | BamTools::BamReader |
OpenIndex(const std::string &indexFilename) | BamTools::BamReader |
Rewind() | BamTools::BamReader |
SetIndex(BamIndex *index) | BamTools::BamReader |
SetRegion(const BamRegion &region) | BamTools::BamReader |
SetRegion(const int &leftRefID, const int &leftPosition, const int &rightRefID, const int &rightPosition) | BamTools::BamReader |
Tell() const | BamTools::BamReader |
~BamReader() | BamTools::BamReader |