Loading...
Searching...
No Matches
BamTools::BamAlignment Member List

This is the complete list of members for BamTools::BamAlignment, including all inherited members.

AddTag(const std::string &tag, const std::string &type, const T &value) | BamTools::BamAlignment |
AddTag(const std::string &tag, const std::vector< T > &values) | BamTools::BamAlignment |
AlignedBases | BamTools::BamAlignment |
AlignmentFlag | BamTools::BamAlignment |
BamAlignment() | BamTools::BamAlignment |
Bin | BamTools::BamAlignment |
BuildCharData() | BamTools::BamAlignment |
CigarData | BamTools::BamAlignment |
EditTag(const std::string &tag, const std::string &type, const T &value) | BamTools::BamAlignment |
EditTag(const std::string &tag, const std::vector< T > &values) | BamTools::BamAlignment |
Filename | BamTools::BamAlignment |
GetArrayTagType(const std::string &tag, char &type) const | BamTools::BamAlignment |
GetEndPosition(bool usePadded=false, bool closedInterval=false) const | BamTools::BamAlignment |
GetErrorString() const | BamTools::BamAlignment |
GetSoftClips(std::vector< int > &clipSizes, std::vector< int > &readPositions, std::vector< int > &genomePositions, bool usePadded=false) const | BamTools::BamAlignment |
GetTag(const std::string &tag, T &destination) const | BamTools::BamAlignment |
GetTag(const std::string &tag, std::vector< T > &destination) const | BamTools::BamAlignment |
GetTagNames() const | BamTools::BamAlignment |
GetTagType(const std::string &tag, char &type) const | BamTools::BamAlignment |
HasTag(const std::string &tag) const | BamTools::BamAlignment |
InsertSize | BamTools::BamAlignment |
Internal::BamReaderPrivate class | BamTools::BamAlignment | friend
Internal::BamWriterPrivate class | BamTools::BamAlignment | friend
IsDuplicate() const | BamTools::BamAlignment |
IsFailedQC() const | BamTools::BamAlignment |
IsFirstMate() const | BamTools::BamAlignment |
IsMapped() const | BamTools::BamAlignment |
IsMateMapped() const | BamTools::BamAlignment |
IsMateReverseStrand() const | BamTools::BamAlignment |
IsPaired() const | BamTools::BamAlignment |
IsPrimaryAlignment() const | BamTools::BamAlignment |
IsProperPair() const | BamTools::BamAlignment |
IsReverseStrand() const | BamTools::BamAlignment |
IsSecondMate() const | BamTools::BamAlignment |
IsSupplementary() const | BamTools::BamAlignment |
Length | BamTools::BamAlignment |
MapQuality | BamTools::BamAlignment |
MatePosition | BamTools::BamAlignment |
MateRefID | BamTools::BamAlignment |
Name | BamTools::BamAlignment |
Position | BamTools::BamAlignment |
Qualities | BamTools::BamAlignment |
QueryBases | BamTools::BamAlignment |
RefID | BamTools::BamAlignment |
RemoveTag(const std::string &tag) | BamTools::BamAlignment |
SetIsDuplicate(bool ok) | BamTools::BamAlignment |
SetIsFailedQC(bool ok) | BamTools::BamAlignment |
SetIsFirstMate(bool ok) | BamTools::BamAlignment |
SetIsMapped(bool ok) | BamTools::BamAlignment |
SetIsMateMapped(bool ok) | BamTools::BamAlignment |
SetIsMateReverseStrand(bool ok) | BamTools::BamAlignment |
SetIsPaired(bool ok) | BamTools::BamAlignment |
SetIsPrimaryAlignment(bool ok) | BamTools::BamAlignment |
SetIsProperPair(bool ok) | BamTools::BamAlignment |
SetIsReverseStrand(bool ok) | BamTools::BamAlignment |
SetIsSecondMate(bool ok) | BamTools::BamAlignment |
TagData | BamTools::BamAlignment |