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Here is a list of all namespace members with links to the namespace documentation for each member:

### - b -

- BAM_ALIGNMENT_DUPLICATE : BamTools::Constants
- BAM_ALIGNMENT_MATE_REVERSE_STRAND : BamTools::Constants
- BAM_ALIGNMENT_MATE_UNMAPPED : BamTools::Constants
- BAM_ALIGNMENT_PAIRED : BamTools::Constants
- BAM_ALIGNMENT_PROPER_PAIR : BamTools::Constants
- BAM_ALIGNMENT_QC_FAILED : BamTools::Constants
- BAM_ALIGNMENT_READ_1 : BamTools::Constants
- BAM_ALIGNMENT_READ_2 : BamTools::Constants
- BAM_ALIGNMENT_REVERSE_STRAND : BamTools::Constants
- BAM_ALIGNMENT_SECONDARY : BamTools::Constants
- BAM_ALIGNMENT_SUPPLEMENTARY : BamTools::Constants
- BAM_ALIGNMENT_UNMAPPED : BamTools::Constants
- BAM_BASECODE_A : BamTools::Constants
- BAM_BASECODE_B : BamTools::Constants
- BAM_BASECODE_C : BamTools::Constants
- BAM_BASECODE_D : BamTools::Constants
- BAM_BASECODE_EQUAL : BamTools::Constants
- BAM_BASECODE_G : BamTools::Constants
- BAM_BASECODE_H : BamTools::Constants
- BAM_BASECODE_K : BamTools::Constants
- BAM_BASECODE_M : BamTools::Constants
- BAM_BASECODE_N : BamTools::Constants
- BAM_BASECODE_R : BamTools::Constants
- BAM_BASECODE_S : BamTools::Constants
- BAM_BASECODE_T : BamTools::Constants
- BAM_BASECODE_V : BamTools::Constants
- BAM_BASECODE_W : BamTools::Constants
- BAM_BASECODE_Y : BamTools::Constants
- BAM_CIGAR_DEL : BamTools::Constants
- BAM_CIGAR_DEL_CHAR : BamTools::Constants
- BAM_CIGAR_HARDCLIP : BamTools::Constants
- BAM_CIGAR_HARDCLIP_CHAR : BamTools::Constants
- BAM_CIGAR_INS : BamTools::Constants
- BAM_CIGAR_INS_CHAR : BamTools::Constants
- BAM_CIGAR_LOOKUP : BamTools::Constants
- BAM_CIGAR_MASK : BamTools::Constants
- BAM_CIGAR_MATCH : BamTools::Constants
- BAM_CIGAR_MATCH_CHAR : BamTools::Constants
- BAM_CIGAR_MISMATCH : BamTools::Constants
- BAM_CIGAR_MISMATCH_CHAR : BamTools::Constants
- BAM_CIGAR_PAD : BamTools::Constants
- BAM_CIGAR_PAD_CHAR : BamTools::Constants
- BAM_CIGAR_REFSKIP : BamTools::Constants
- BAM_CIGAR_REFSKIP_CHAR : BamTools::Constants
- BAM_CIGAR_SEQMATCH : BamTools::Constants
- BAM_CIGAR_SEQMATCH_CHAR : BamTools::Constants
- BAM_CIGAR_SHIFT : BamTools::Constants
- BAM_CIGAR_SOFTCLIP : BamTools::Constants
- BAM_CIGAR_SOFTCLIP_CHAR : BamTools::Constants
- BAM_CORE_BUFFER_SIZE : BamTools::Constants
- BAM_CORE_SIZE : BamTools::Constants
- BAM_DNA_A : BamTools::Constants
- BAM_DNA_B : BamTools::Constants
- BAM_DNA_C : BamTools::Constants
- BAM_DNA_D : BamTools::Constants
- BAM_DNA_DEL : BamTools::Constants
- BAM_DNA_EQUAL : BamTools::Constants
- BAM_DNA_G : BamTools::Constants
- BAM_DNA_H : BamTools::Constants
- BAM_DNA_K : BamTools::Constants
- BAM_DNA_LOOKUP : BamTools::Constants
- BAM_DNA_M : BamTools::Constants
- BAM_DNA_N : BamTools::Constants
- BAM_DNA_PAD : BamTools::Constants
- BAM_DNA_R : BamTools::Constants
- BAM_DNA_S : BamTools::Constants
- BAM_DNA_T : BamTools::Constants
- BAM_DNA_V : BamTools::Constants
- BAM_DNA_W : BamTools::Constants
- BAM_DNA_Y : BamTools::Constants
- BAM_HEADER_MAGIC : BamTools::Constants
- BAM_HEADER_MAGIC_LENGTH : BamTools::Constants
- BAM_SIZEOF_INT : BamTools::Constants
- BAM_TAG_ARRAYBASE_SIZE : BamTools::Constants
- BAM_TAG_TAGSIZE : BamTools::Constants
- BAM_TAG_TYPE_ARRAY : BamTools::Constants
- BAM_TAG_TYPE_ASCII : BamTools::Constants
- BAM_TAG_TYPE_FLOAT : BamTools::Constants
- BAM_TAG_TYPE_HEX : BamTools::Constants
- BAM_TAG_TYPE_INT16 : BamTools::Constants
- BAM_TAG_TYPE_INT32 : BamTools::Constants
- BAM_TAG_TYPE_INT8 : BamTools::Constants
- BAM_TAG_TYPE_STRING : BamTools::Constants
- BAM_TAG_TYPE_UINT16 : BamTools::Constants
- BAM_TAG_TYPE_UINT32 : BamTools::Constants
- BAM_TAG_TYPE_UINT8 : BamTools::Constants
- BAM_TAG_TYPESIZE : BamTools::Constants
- BamAlignment::AddTag< std::string >() : BamTools
- BamAlignment::GetTag< std::string >() : BamTools
- BamAlignmentVector : BamTools
- BGZF_BLOCK_FOOTER_LENGTH : BamTools::Constants
- BGZF_BLOCK_HEADER_LENGTH : BamTools::Constants
- BGZF_DEFAULT_BLOCK_SIZE : BamTools::Constants
- BGZF_ID1 : BamTools::Constants
- BGZF_ID2 : BamTools::Constants
- BGZF_LEN : BamTools::Constants
- BGZF_MAX_BLOCK_SIZE : BamTools::Constants
- BGZF_XLEN : BamTools::Constants

### - c -

- CM_DEFLATE : BamTools::Constants

### - f -

- FileExists() : BamTools
- FLG_FEXTRA : BamTools::Constants

### - g -

- GZIP_ID1 : BamTools::Constants
- GZIP_ID2 : BamTools::Constants
- GZIP_WINDOW_BITS : BamTools::Constants

### - o -

- operator==() : BamTools
- OS_UNKNOWN : BamTools::Constants

### - p -

- PackUnsignedInt() : BamTools
- PackUnsignedShort() : BamTools

### - r -

- RefVector : BamTools

### - s -

- SAM_CO_BEGIN_TOKEN : BamTools::Constants
- SAM_COLON : BamTools::Constants
- SAM_CURRENT_VERSION : BamTools::Constants
- SAM_DIGITS : BamTools::Constants
- SAM_EQUAL : BamTools::Constants
- SAM_HD_BEGIN_TOKEN : BamTools::Constants
- SAM_HD_GROUPORDER_NONE : BamTools::Constants
- SAM_HD_GROUPORDER_QUERY : BamTools::Constants
- SAM_HD_GROUPORDER_REFERENCE : BamTools::Constants
- SAM_HD_GROUPORDER_TAG : BamTools::Constants
- SAM_HD_SORTORDER_COORDINATE : BamTools::Constants
- SAM_HD_SORTORDER_QUERYNAME : BamTools::Constants
- SAM_HD_SORTORDER_TAG : BamTools::Constants
- SAM_HD_SORTORDER_UNKNOWN : BamTools::Constants
- SAM_HD_SORTORDER_UNSORTED : BamTools::Constants
- SAM_HD_VERSION_TAG : BamTools::Constants
- SAM_PERIOD : BamTools::Constants
- SAM_PG_BEGIN_TOKEN : BamTools::Constants
- SAM_PG_COMMANDLINE_TAG : BamTools::Constants
- SAM_PG_ID_TAG : BamTools::Constants
- SAM_PG_NAME_TAG : BamTools::Constants
- SAM_PG_PREVIOUSPROGRAM_TAG : BamTools::Constants
- SAM_PG_VERSION_TAG : BamTools::Constants
- SAM_RG_BEGIN_TOKEN : BamTools::Constants
- SAM_RG_DESCRIPTION_TAG : BamTools::Constants
- SAM_RG_FLOWORDER_TAG : BamTools::Constants
- SAM_RG_ID_TAG : BamTools::Constants
- SAM_RG_KEYSEQUENCE_TAG : BamTools::Constants
- SAM_RG_LIBRARY_TAG : BamTools::Constants
- SAM_RG_PLATFORMUNIT_TAG : BamTools::Constants
- SAM_RG_PREDICTEDINSERTSIZE_TAG : BamTools::Constants
- SAM_RG_PRODUCTIONDATE_TAG : BamTools::Constants
- SAM_RG_PROGRAM_TAG : BamTools::Constants
- SAM_RG_SAMPLE_TAG : BamTools::Constants
- SAM_RG_SEQCENTER_TAG : BamTools::Constants
- SAM_RG_SEQTECHNOLOGY_CAPILLARY : BamTools::Constants
- SAM_RG_SEQTECHNOLOGY_HELICOS : BamTools::Constants
- SAM_RG_SEQTECHNOLOGY_ILLUMINA : BamTools::Constants
- SAM_RG_SEQTECHNOLOGY_IONTORRENT : BamTools::Constants
- SAM_RG_SEQTECHNOLOGY_LS454 : BamTools::Constants
- SAM_RG_SEQTECHNOLOGY_PACBIO : BamTools::Constants
- SAM_RG_SEQTECHNOLOGY_SOLID : BamTools::Constants
- SAM_RG_SEQTECHNOLOGY_TAG : BamTools::Constants
- SAM_SQ_ASSEMBLYID_TAG : BamTools::Constants
- SAM_SQ_BEGIN_TOKEN : BamTools::Constants
- SAM_SQ_CHECKSUM_TAG : BamTools::Constants
- SAM_SQ_LENGTH_MAX : BamTools::Constants
- SAM_SQ_LENGTH_MIN : BamTools::Constants
- SAM_SQ_LENGTH_TAG : BamTools::Constants
- SAM_SQ_NAME_TAG : BamTools::Constants
- SAM_SQ_SPECIES_TAG : BamTools::Constants
- SAM_SQ_URI_TAG : BamTools::Constants
- SAM_STAR : BamTools::Constants
- SAM_TAB : BamTools::Constants
- SamProgramConstIterator : BamTools
- SamProgramContainer : BamTools
- SamProgramIterator : BamTools
- SamReadGroupConstIterator : BamTools
- SamReadGroupContainer : BamTools
- SamReadGroupIterator : BamTools
- SamSequenceConstIterator : BamTools
- SamSequenceContainer : BamTools
- SamSequenceIterator : BamTools
- SwapEndian_16() : BamTools
- SwapEndian_16p() : BamTools
- SwapEndian_32() : BamTools
- SwapEndian_32p() : BamTools
- SwapEndian_64() : BamTools
- SwapEndian_64p() : BamTools
- SystemIsBigEndian() : BamTools

### - u -

- UnpackDouble() : BamTools
- UnpackFloat() : BamTools
- UnpackSignedInt() : BamTools
- UnpackSignedShort() : BamTools
- UnpackUnsignedInt() : BamTools
- UnpackUnsignedShort() : BamTools

### - z -

- Z_DEFAULT_MEM_LEVEL : BamTools::Constants