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Here is a list of all class members with links to the classes they belong to:

### - i -

- I : BALL::Element
- i : BALL::MMFF94OutOfPlaneBend::OutOfPlaneBend, BALL::TQuaternion< T >
- ic_ : BALL::MMFF94TorsionParameters
- IconLoader() : BALL::VIEW::IconLoader
- icosaeder() : BALL::TriangulatedSphere
- icosaeder_steps_ : BALL::VIEW::FieldLineCreator
- ID : BALL::QSAR::InputPartitioningConfiguration, BALL::StaticLigandFragment
- id : BALL::FlexibleMolecule, BALL::VIEW::ChannelFormat
- id_ : BALL::PDBInfo, BALL::VIEW::DisplayProperties, BALL::VIEW::LabelDialog
- ID_code : BALL::PDB::RecordHEADER
- id_code : BALL::PDB::RecordSEQADV, BALL::PDB::RecordSPRSDE
- id_to_menu_ : BALL::VIEW::MainControl
- id_to_type_ : BALL::MMFF94AtomTyper
- idChanged() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- IDENTIFIER : BALL::RegularExpression
- identifyDisplays() : BALL::VIEW::StageSettings
- idx_start_data_ : BALL::AmiraMeshFile
- ignore_ : BALL::VIEW::AtomOverview, BALL::VIEW::LightSettings
- ignore_atoms_ : BALL::CreateSpectrumProcessor
- ignore_change_ : BALL::VIEW::GeometricControl
- ignore_event_ : BALL::VIEW::HelpViewer
- ignore_events_ : BALL::VIEW::GLRenderWindow
- IGNORE_H_CLASHES : BALL::ScoringFunction::Default, BALL::ScoringFunction::Option
- ignore_h_clashes_ : BALL::ScoringFunction
- ignore_messages_ : BALL::VIEW::MolecularControl
- ignore_other_chain_ : BALL::AnisotropyShiftProcessor
- ignore_pick_ : BALL::VIEW::PickingMode
- IGNORE_SECTION_NAME : BALL::CreateSpectrumProcessor
- IGNORE_XPLOR_PSEUDO_ATOMS : BALL::PDBFile::Default, BALL::PDBFile::Option
- ignore_xplor_pseudo_atoms_ : BALL::PDBFile
- ignoreEvents() : BALL::VIEW::GLRenderWindow
- ile_pressed() : BALL::VIEW::PeptideDialog
- IllegalKey() : BALL::HashMap< Key, T >::IllegalKey, BALL::HashSet< Key >::IllegalKey
- IllegalOperation() : BALL::Bit::IllegalOperation
- IllegalPosition() : BALL::Exception::IllegalPosition
- IllegalSelfOperation() : BALL::Exception::IllegalSelfOperation
- IllegalStateException() : BALL::GRAPH::IllegalStateException
- IllegalTreeOperation() : BALL::Exception::IllegalTreeOperation
- ILP : BALL::AssignBondOrderProcessor::Algorithm
- ilp_ : BALL::ILPBondOrderStrategy
- ILPBondOrderStrategy : BALL::AssignBondOrderProcessor, BALL::ILPBondOrderStrategy
- image_cache_ : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile, BALL::VIEW::GenerateCrystalDialog
- IMGDock() : BALL::IMGDock
- immune_ : BALL::GeneticAlgorithm
- IMPLICIT_HYDROGENS : BALL::SmartsParser::SPAtom
- implicitSelection() : BALL::QSAR::FeatureSelection
- important_ : BALL::VIEW::LogEvent
- important_text_in_statusbar_ : BALL::VIEW::MainControl
- IMPROVED : BALL::StrangLBFGSMinimizer::Default, BALL::StrangLBFGSMinimizer::Option
- improved_ : BALL::StrangLBFGSMinimizer
- In : BALL::Element
- IN_BRACKETS : BALL::SmartsParser::SPAtom
- in_brackets_ : BALL::SmilesParser::SPAtom
- IN_NUM_RINGS : BALL::SmartsParser::SPAtom
- IN_RING : BALL::SDGenerator, BALL::SmartsParser::SPBond
- IN_RING_SIZE : BALL::SmartsParser::SPAtom
- IN_SC_SEPERATOR : BALL::VIEW::ShortcutRegistry
- inBlock() : BALL::GAMESSDatFile
- INCLUDE_ALL : BALL::MolecularGraph
- IncompatibleCoordinateSets() : BALL::RMSDMinimizer::IncompatibleCoordinateSets
- IncompatibleIndex() : BALL::EnumeratorIndex::IncompatibleIndex
- IncompatibleIterators() : BALL::Exception::IncompatibleIterators
- incomplete_line_ : BALL::LogStreamBuf
- InconsistentUsage() : BALL::QSAR::Exception::InconsistentUsage
- inDatablock() : BALL::CIFFile
- indent() : BALL::TextPersistenceManager
- index : BALL::FDPB::FastAtomStruct, BALL::FPTBondOrderStrategy::BackTrackingState_
- index_ : BALL::Exception::IndexOverflow, BALL::Exception::IndexUnderflow, BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::SnapShot, BALL::TContour< T >, BALL::TContourLine< T >, BALL::VIEW::DockResultDialog::Compare_
- index_of_free_vect_ : BALL::StrangLBFGSMinimizer
- index_to_bond_ : BALL::AssignBondOrderProcessor, BALL::RingPerceptionProcessor
- index_to_free_bond_ : BALL::ILPBondOrderStrategy
- index_to_vertex_ : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >
- IndexAtomMap : BALL::KCFFile
- IndexOverflow() : BALL::Exception::IndexOverflow
- IndexType : BALL::TFFT2D< ComplexTraits >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >::IndexType, BALL::TRegularData3D< ValueType >::IndexType
- IndexUnderflow() : BALL::Exception::IndexUnderflow
- indices_ : BALL::ClaverieParameter
- indirect_shift_ratio : BALL::NMRStarFile::ShiftReferenceElement
- INDIUM : BALL::Element
- INFILE : BALL::ParamFile
- infile_ : BALL::VIEW::TestFramework
- INFILELIST : BALL::ParamFile
- infinite_penalty : BALL::FPTBondOrderStrategy
- info() : BALL::LogStream, BALL::PDBFile
- info_color_ : BALL::VIEW::Stage
- info_point_ : BALL::VIEW::Scene
- info_string_ : BALL::VIEW::Scene
- InfoDisplayStyle : BALL::VIEW::PubChemDialog
- information_ : BALL::VIEW::MolecularControl, BALL::VIEW::Representation
- INFORMATION_LEVEL : BALL::LogStream
- information_templates_ : BALL::VIEW::PubChemDialog
- inFourierSpace_ : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- INI_file_ : BALL::Parameters
- INI_FILE_NAME : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- INIFile : BALL::AssignBondOrderProcessor::Default, BALL::AssignBondOrderProcessor::Option, BALL::INIFile, BALL::INIFile::IteratorTraits_, BALL::INIFile::Section, BALL::Peptides::NameConverter::Default, BALL::Peptides::NameConverter::Option
- inifile_section_name_ : BALL::VIEW::PreferencesEntry
- init() : BALL::AnisotropyShiftProcessor, BALL::AStarBondOrderStrategy, BALL::BondOrderAssignmentStrategy, BALL::BranchAndBoundBondOrderStrategy, BALL::CreateSpectrumProcessor, BALL::DCDFile, BALL::EFShiftProcessor, BALL::EmpiricalHSShiftProcessor, BALL::ForceFieldParameters, BALL::FPTBondOrderStrategy, BALL::FragmentDB, BALL::GlobalInitializer, BALL::HaighMallionShiftProcessor, BALL::HBondProcessor, BALL::HBondShiftProcessor, BALL::ILPBondOrderStrategy, BALL::JohnsonBoveyShiftProcessor, BALL::KGreedyBondOrderStrategy, BALL::MPISupport, BALL::Parameters, BALL::RandomCoilShiftProcessor, BALL::ShiftModule, BALL::TRRFile, BALL::VIEW::CudaVolumeRenderer, BALL::VIEW::GLRenderer, BALL::VIEW::GLRenderWindow, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::RenderSetup, BALL::VIEW::RenderTarget, BALL::VIEW::RTfactRenderer, BALL::VIEW::Scene, BALL::VIEW::STLRenderer, BALL::VIEW::TRenderWindow< taPixelDatatype >, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- init_() : BALL::PDBFile, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::ShiftModel, BALL::VIEW::InteractionModeManager, BALL::VIEW::MainControl
- initAlwaysFront() : BALL::VIEW::GLRenderer
- initDrawingMeshes_() : BALL::VIEW::GLRenderer
- initDrawingOthers_() : BALL::VIEW::GLRenderer
- initElementSymbols() : BALL::GAFFCESParser
- inItem() : BALL::CIFFile
- initFFTGrid_() : BALL::GeometricFit
- initGL() : BALL::VIEW::MeshBuffer
- initGLU_() : BALL::VIEW::GLRenderer
- initGridSizes_() : BALL::GeometricFit
- initial_atoms_ : BALL::ShiftedLVMMMinimizer, BALL::StrangLBFGSMinimizer
- INITIAL_CAPACITY : BALL::HashSet< Key >
- initial_database_segment : BALL::PDB::RecordDBREF
- initial_energy_ : BALL::EnergyMinimizer
- initial_grad_ : BALL::EnergyMinimizer
- INITIAL_NUMBER_OF_BUCKETS : BALL::HashSet< Key >
- INITIAL_POPULATION : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- initial_residue : BALL::PDB::RecordHELIX, BALL::PDB::RecordSHEET, BALL::PDB::RecordTURN
- initial_sequence : BALL::PDB::RecordDBREF
- initialize() : BALL::PyInterpreter, BALL::RuleEvaluator, BALL::RuleProcessor, BALL::VIEW::MeshBuffer
- initialize_() : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- initializeBasisSet() : BALL::GAMESSLogFile
- initialized_ : BALL::Path
- INITIALIZED_HEAD_CFS : BALL::SDGenerator
- initializeHashGrid() : BALL::ScoringFunction
- initializeInputStream() : BALL::PersistenceManager, BALL::XDRPersistenceManager
- initializeMembers_() : BALL::VIEW::Scene
- initializeOutputStream() : BALL::PersistenceManager, BALL::XDRPersistenceManager
- initializePreferencesTab() : BALL::VIEW::DisplayProperties, BALL::VIEW::ModularWidget, BALL::VIEW::PyWidget, BALL::VIEW::Scene, BALL::VIEW::ServerWidget
- initializePreferencesTab_() : BALL::VIEW::MainControl
- initializeWidget() : BALL::VIEW::AssignBondOrderConfigurationDialog, BALL::VIEW::AssignBondOrderResultsDialog, BALL::VIEW::DatasetControl, BALL::VIEW::DisplayProperties, BALL::VIEW::DockDialog, BALL::VIEW::DockingController, BALL::VIEW::DockWidget, BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile, BALL::VIEW::FileObserver, BALL::VIEW::GenericControl, BALL::VIEW::GeometricControl, BALL::VIEW::HelpViewer, BALL::VIEW::LabelDialog, BALL::VIEW::LogView, BALL::VIEW::ModularWidget, BALL::VIEW::MolecularControl, BALL::VIEW::MolecularFileDialog, BALL::VIEW::MolecularStructure, BALL::VIEW::PluginDialog, BALL::VIEW::PubChemDialog, BALL::VIEW::PyWidget, BALL::VIEW::Scene, BALL::VIEW::ServerWidget, BALL::VIEW::ShortcutDialog, BALL::VIEW::StereoSettingsDialog, BALL::VIEW::TestFramework, BALL::VIEW::UndoManagerDialog
- initPenaltyData_() : BALL::FPTBondOrderStrategy
- initPersistenceManager() : BALL::MoleculeObjectCreator, BALL::ObjectCreator
- initPerspective() : BALL::VIEW::GLRenderer
- initPopupMenu() : BALL::VIEW::MainControl
- initRead_() : BALL::CIFFile, BALL::GAMESSDatFile, BALL::GAMESSLogFile, BALL::GenericMolFile, BALL::HINFile
- initSolid() : BALL::VIEW::GLRenderer
- initSpaceGroupList() : BALL::VIEW::GenerateCrystalDialog
- initStringToWildcard() : BALL::GAFFCESParser::CESPredicate
- initTable() : BALL::ParsedFunction< arg >
- initTransparent() : BALL::VIEW::GLRenderer
- initType_() : BALL::VIEW::RenderSetup
- initWardDistance_() : BALL::PoseClustering
- initWrite_() : BALL::GenericMolFile
- inMoveMode() : BALL::VIEW::Scene
- INNER_BAG : BALL::TreeWidth< UndirectedGraph >
- inorder() : BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- input : BALL::VIEW::RunPythonThread
- input_ : BALL::TreeWidth< UndirectedGraph >
- input_conformations_ : BALL::Result
- input_conformations_map_ : BALL::Result
- input_file : BALL::QSAR::InputPartitioningConfiguration
- input_is_temporary_ : BALL::GenericMolFile
- InputConfiguration() : BALL::QSAR::InputConfiguration
- InputDeviceDriver() : BALL::VIEW::InputDeviceDriver
- InputPartitioningConfiguration() : BALL::QSAR::InputPartitioningConfiguration
- InRingPredicate() : BALL::InRingPredicate
- inSafeframe() : BALL::CIFFile
- insert() : BALL::AtomContainer, BALL::Chain, BALL::Client, BALL::FPTBondOrderStrategy::DPTable_, BALL::GeneticIndividual, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::LogStream, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBRecords, BALL::Protein, BALL::ReducedSurface, BALL::Residue, BALL::ResourceEntry, BALL::ResourceFile, BALL::SecondaryStructure, BALL::String, BALL::StringHashMap< Value >, BALL::System, BALL::TriangulatedSurface, BALL::VIEW::CompositeManager, BALL::VIEW::MainControl, BALL::VIEW::Representation, BALL::VIEW::RepresentationManager
- insert_() : BALL::Peptides::PeptideBuilder, BALL::VIEW::EditMode, BALL::VIEW::PeptideDialog, BALL::VIEW::PubChemDialog, BALL::VIEW::Scene
- insert_seq() : BALL::VIEW::PeptideDialog
- insertAfter() : BALL::AtomContainer, BALL::Chain, BALL::Composite, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, BALL::System
- insertAtom() : BALL::GAMESSDatFile, BALL::GAMESSLogFile
- insertAtom_() : BALL::VIEW::AtomBondModelBaseProcessor
- insertBefore() : BALL::AtomContainer, BALL::Chain, BALL::Composite, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, BALL::System
- insertBlockedData() : BALL::GAMESSDatFile
- insertBond() : BALL::GAMESSDatFile, BALL::GAMESSLogFile
- insertChild() : BALL::ResourceEntry
- insertChildEntry() : BALL::VIEW::Preferences
- insertClippingPlane() : BALL::VIEW::RepresentationManager
- insertComponent() : BALL::ForceField, BALL::ScoringFunction
- insertComponents_() : BALL::MMFF94
- insertDatablock() : BALL::CIFFile
- insertDatacontent() : BALL::CIFFile::Datablock
- insertDataset() : BALL::VIEW::DatasetController
- insertDeleteEntry() : BALL::VIEW::MainControl
- inserted_atoms_ : BALL::ReconstructFragmentProcessor
- insertEntry() : BALL::VIEW::Preferences
- insertGrid_() : BALL::VIEW::GridVisualizationDialog, BALL::VIEW::ModifyRepresentationDialog
- insertHotkey() : BALL::VIEW::PyWidget
- insertion_code : BALL::PDB::RecordDBREF::EndingDatabaseSegment, BALL::PDB::RecordDBREF::EndingSequence, BALL::PDB::RecordDBREF::InitialDatabaseSegment, BALL::PDB::RecordDBREF::InitialSequence, BALL::PDB::Residue
- insertion_code_ : BALL::PDBFile
- insertLine() : BALL::INIFile
- insertMenuEntry() : BALL::VIEW::MainControl, BALL::VIEW::ModularWidget
- insertMenuEntry_() : BALL::VIEW::DatasetController
- insertNCS() : BALL::CrystalInfo
- insertNotification() : BALL::LogStream
- insertParent() : BALL::Composite
- insertPopupMenuSeparator() : BALL::VIEW::MainControl
- insertSibling() : BALL::ResourceEntry
- insertStackEntry_() : BALL::VIEW::PreferencesEntry
- insertSubstance() : BALL::QSAR::QSARData
- insertTriangle_() : BALL::VIEW::AddCartoonModel
- insertTurn_() : BALL::SecondaryStructureProcessor
- insertValue() : BALL::INIFile
- instance() : BALL::PluginManager, BALL::VIEW::IconLoader, BALL::VIEW::UIOperationMode
- instance_ : BALL::VIEW::UIOperationMode
- instance_handles : BALL::VIEW::RTfactRenderer::RTfactData
- instr() : BALL::String
- INT : BALL::NamedProperty, BALL::ParamFile
- int_value : BALL::SmartsParser::SPAtom::PropertyValue
- INT_VALUE_NA : BALL::NMRStarFile
- IntEditorWidget() : BALL::VIEW::IntEditorWidget
- INTEGER : BALL::RegularExpression
- integrate() : BALL::NumericalIntegrator< Function, DataType >, BALL::Pair6_12RDFIntegrator, BALL::PairExpRDFIntegrator, BALL::RombergIntegrator< Function, DataType >
- integrateToInf() : BALL::Pair6_12RDFIntegrator, BALL::PairExpRDFIntegrator
- IntegrationMethod : BALL::Pair6_12RDFIntegrator
- intend_ : BALL::VIEW::PyWidget
- intensity : BALL::JohnsonBoveyShiftProcessor::Ring
- intensity_ : BALL::Peak< PositionType >, BALL::VIEW::LightSource
- intensity_factors_ : BALL::HaighMallionShiftProcessor
- intensityChanged() : BALL::VIEW::LightSettings
- intensityMaxChanged() : BALL::VIEW::LightSettings
- inter_bonds : BALL::MOL2File::SubstructureStruct
- interaction_no_scale_ : BALL::ScoreGridSet
- interaction_score : BALL::ScoringFunction::Result
- InteractionMode() : BALL::VIEW::InteractionMode
- InteractionModeManager() : BALL::VIEW::InteractionModeManager
- interactions : BALL::Atom
- intercept_ : BALL::ScoringFunction
- INTERLACED_STEREO : BALL::VIEW::Renderer
- internal_ : BALL::SmartsParser::SPEdge, BALL::SmartsParser::SPNode
- interpol12() : BALL::TContourLine< T >
- interpol18() : BALL::TContourLine< T >
- interpol24() : BALL::TContourLine< T >
- interpol48() : BALL::TContourLine< T >
- interpolate_() : BALL::VIEW::AddBackboneModel
- interpolateColor() : BALL::VIEW::InterpolateColorProcessor
- InterpolateColorProcessor() : BALL::VIEW::InterpolateColorProcessor
- interpolated_points_ : BALL::VIEW::AddBackboneModel
- interpolation_boundaries_ : BALL::VIEW::ColorMap
- interpolation_steps_ : BALL::VIEW::AddBackboneModel, BALL::VIEW::FieldLineCreator
- interpretRecord() : BALL::PDBFile
- Intersection : BALL::SESSingularityCleaner
- intersection_point0_ : BALL::RSEdge
- intersection_point1_ : BALL::RSEdge
- intersectRaysWithGeometry() : BALL::VIEW::RaytracingRenderer, BALL::VIEW::RTfactRenderer
- intervals_ : BALL::PiecewiseFunction
- INTLIST : BALL::ParamFile
- INTRODUCE_BAG : BALL::TreeWidth< UndirectedGraph >
- inv_norm : BALL::Gradient
- INVALID : BALL::ExpressionTree
- invalid_records_ : BALL::PDBInfo
- InvalidActivityID() : BALL::QSAR::Exception::InvalidActivityID
- InvalidArgument() : BALL::Exception::InvalidArgument
- invalidate() : BALL::Atom::BondIteratorTraits, BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::Gradient, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashSet< Key >::IteratorTraits, BALL::ResourceEntry::IteratorTraits_
- invalidateGrid_() : BALL::VIEW::ModifyRepresentationDialog
- invalidateMesh_() : BALL::VIEW::ModifyRepresentationDialog
- InvalidClient() : BALL::Client::InvalidClient
- invalidDescriptors_ : BALL::QSAR::QSARData
- InvalidFormat() : BALL::Exception::InvalidFormat
- InvalidIterator() : BALL::Exception::InvalidIterator
- InvalidOption() : BALL::Exception::InvalidOption
- InvalidRange() : BALL::Exception::InvalidRange
- InvalidSize() : BALL::Exception::InvalidSize
- invalidSubstances_ : BALL::QSAR::QSARData
- InvalidSubstring() : BALL::Substring::InvalidSubstring
- inverse_mapping_ : BALL::TRegularData3D< ValueType >
- inversion_retention : BALL::MOLFile::AtomStruct
- invert() : BALL::TMatrix4x4< T >
- io_service_ : BALL::TCPServer
- IODINE : BALL::Element
- ION_RADIUS : BALL::FDPB::Default, BALL::FDPB::Option
- IONIC_STRENGTH : BALL::FDPB::Default, BALL::FDPB::Option
- Ir : BALL::Element
- ir_size : BALL::TRRFile::TRRHeader
- IRIDIUM : BALL::Element
- IRON : BALL::Element
- is3Prime() : BALL::Nucleotide
- is5Prime() : BALL::Nucleotide
- is_1_4 : BALL::MMFF94NonBonded::NonBondedPairData
- IS_3_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- IS_4_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- IS_5_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- IS_6_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- IS_7_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- IS_8_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- IS_9_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- IS_AROMATIC : BALL::Bond
- is_aromatic_ : BALL::SmilesParser::SPAtom
- is_bracketed_ : BALL::LineSearch
- is_command_line_ : BALL::VIEW::TestFramework
- is_complete : BALL::HBondProcessor::ResidueData
- is_current_ : BALL::VIEW::InteractionMode
- is_defined_ : BALL::CharmmEEF1, BALL::LennardJones, BALL::Potential1210, BALL::QuadraticBondStretch
- is_given : BALL::PDB::RecordMTRIX1, BALL::PDB::RecordMTRIX2, BALL::PDB::RecordMTRIX3
- is_hydrogen_bond_ : BALL::VanDerWaalsSlick
- is_initialized_ : BALL::MMFF94ParametersBase
- is_linear : BALL::MMFF94StretchBend::Bend
- is_locked_ : BALL::VIEW::ServerWidget::BALLViewServer
- is_loop : BALL::CIFFile::Item
- IS_NON_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- is_not_ : BALL::SmartsParser::SPEdge, BALL::SmartsParser::SPNode
- is_open_ : BALL::File
- is_orthogonal_ : BALL::TRegularData3D< ValueType >
- IS_OTHER_RING : BALL::GAFFCESParser::APSMatcher
- IS_PLANAR : BALL::GAFFCESParser::APSMatcher
- IS_PLANAR_WITH_DB_TO_NR : BALL::GAFFCESParser::APSMatcher
- is_proline_ : BALL::Peptides::PeptideBuilder
- IS_PURELY_ALIPHATIC : BALL::GAFFCESParser::APSMatcher
- IS_PURELY_AROMATIC : BALL::GAFFCESParser::APSMatcher
- is_recording_ : BALL::VIEW::EditSingleShortcut
- IS_RING_ATOM : BALL::GAFFCESParser::APSMatcher
- is_running_ : BALL::TCPServerThread
- is_saveframe : BALL::CIFFile::Datacontent
- IS_SIMPLICIAL : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >
- IS_SOLVENT : BALL::Molecule
- is_static : BALL::MOL2File::SetStruct
- is_temporary_ : BALL::File
- is_valid_position_ : BALL::Enumerator< Container, SiteIterator, Variant >
- is_water : BALL::PDB::RecordFORMUL
- isAboutToQuit() : BALL::VIEW::MainControl, BALL::VIEW::RenderSetup
- isAccessible() : BALL::File
- isActive() : BALL::BALLPlugin, BALL::VIEW::ClippingPlane, BALL::VIEW::VIEWPlugin
- isAdvanced() : BALL::VIEW::UIOperationMode
- isAlnum() : BALL::String
- isAlpha() : BALL::String
- isAlphaEnabled() : BALL::VIEW::ColorButton
- isAltered() : BALL::GeneticIndividual
- isAminoAcid() : BALL::Residue
- isAminoAcid_() : BALL::VIEW::PeptideDialog
- isAncestorOf() : BALL::Composite, BALL::ResourceEntry
- isAnimationRunning() : BALL::VIEW::Scene
- isAnyBit() : BALL::BitVector
- isAromatic() : BALL::Bond, BALL::SmilesParser::SPAtom
- isAtom() : BALL::Atom, BALL::Composite
- isAtomPairwise() : BALL::ScoringComponent
- isAutoDeletable() : BALL::AutoDeletable
- isBackboneDependent() : BALL::RotamerLibrary
- isBallAndStickModel() : BALL::VIEW::AddBallAndStickModel
- isBeeingRendered() : BALL::VIEW::RepresentationManager
- isBegin() : BALL::Atom::BondIteratorTraits, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstForwardIterator< Container, DataType, Position, Traits >, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashSet< Key >::IteratorTraits, BALL::ResourceEntry::IteratorTraits_
- isBondOf() : BALL::Bond
- isBool() : BALL::Options
- isBound() : BALL::Atom, BALL::Bond, BALL::Substring
- isBoundTo() : BALL::Atom
- isBracketed() : BALL::LineSearch
- isBusy() : BALL::VIEW::MainControl, BALL::VIEW::MeshBuffer
- isCanonized() : BALL::File
- isCentralRing_() : BALL::RingAnalyser
- isChain() : BALL::Chain, BALL::Composite
- isChildOf() : BALL::Composite, BALL::ResourceEntry
- isClosed() : BALL::File
- isCompileAndExecuteMode() : BALL::VIEW::GLDisplayList
- isCompileMode() : BALL::VIEW::GLDisplayList
- isCompressedFile() : BALL::GenericMolFile
- isConnectionObjectRegistered() : BALL::VIEW::ConnectionObject
- isContinuous() : BALL::VIEW::Renderer, BALL::VIEW::RenderSetup
- isConverged() : BALL::EnergyMinimizer
- isCTerminal() : BALL::Residue
- isCurrent() : BALL::Directory, BALL::VIEW::InteractionMode
- isDataCentered() : BALL::QSAR::QSARData
- isDefaultPositionAddress() : BALL::VIEW::Sphere
- isDefaultVertex1Address() : BALL::VIEW::Vertex2
- isDefaultVertex2Address() : BALL::VIEW::Vertex2
- isDefaultVertexAddress() : BALL::VIEW::Vertex
- isDefaultVertexAddresses() : BALL::VIEW::Vertex2
- isDeletable() : BALL::VIEW::Message
- isDescendantOf() : BALL::Composite, BALL::ResourceEntry
- isDiagonal() : BALL::TMatrix4x4< T >
- isDigit() : BALL::String
- isDiscrete() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- isEditable() : BALL::VIEW::PropEditorWidget, BALL::VIEW::PropertyEditor
- isEmpty() : BALL::Composite, BALL::Directory, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::List< Value >, BALL::RegularExpression, BALL::ResourceEntry, BALL::ResourceFile, BALL::String, BALL::StringHashMap< Value >, BALL::Substring, BALL::TSphere3< T >
- isEnabled() : BALL::ForceFieldComponent, BALL::PeriodicBoundary, BALL::ResidueChecker, BALL::ScoreGridSet, BALL::ScoringComponent, BALL::VIEW::InputDeviceDriver
- isEnd() : BALL::Atom::BondIteratorTraits, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstForwardIterator< Container, DataType, Position, Traits >, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashSet< Key >::IteratorTraits, BALL::ResourceEntry::IteratorTraits_
- isEqual() : BALL::Comparator< T >, BALL::TMatrix4x4< T >
- isEquivalent() : BALL::TAngle< T >
- isEveryBit() : BALL::BitVector
- isExcludedByLevelOfDetail_() : BALL::PoseClustering
- isExecutable() : BALL::File
- isExtensionSupported() : BALL::VIEW::GLRenderer
- isFileExtensionSupported() : BALL::MolFileFactory, BALL::TrajectoryFileFactory
- isFinished() : BALL::ConnectedToPredicate::CTPNode
- isFirstChild() : BALL::Composite
- isFirstChildOf() : BALL::Composite
- isFloat() : BALL::String
- isFragment() : BALL::Composite, BALL::Fragment
- isFree() : BALL::RSEdge, BALL::SASEdge, BALL::SESEdge, BALL::SESFace
- isFull() : BALL::VIEW::UIOperationMode
- isGeminal() : BALL::Atom
- isgiven : BALL::PDB::Structure::NCSMatrix
- isgivenNCS() : BALL::CrystalInfo
- isGreater() : BALL::Comparator< T >
- isGreaterOrEqual() : BALL::Comparator< T >
- isGridable() : BALL::ScoringComponent
- isGridSizePowerOfTwo() : BALL::VIEW::RegularData3DController
- isHeteroAtom_() : BALL::PDBFile
- isHidden() : BALL::VIEW::ClippingPlane, BALL::VIEW::Representation
- isHomomorph() : BALL::Composite
- isHumanReadable() : BALL::VIEW::POVRenderer, BALL::VIEW::XML3DRenderer
- isIdentity() : BALL::TMatrix4x4< T >
- isImportant() : BALL::VIEW::LogEvent
- isInBrackets() : BALL::SmilesParser::SPAtom
- isInDirectMode() : BALL::VIEW::PyWidget
- isInFourierSpace() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- isInitialized() : BALL::MMFF94ParametersBase, BALL::PyInterpreter
- isInOneAromaticRing() : BALL::MMFF94
- isInRange() : BALL::PiecewiseFunction, BALL::RadialDistributionFunction
- isInRing() : BALL::RingAnalyser
- isInRingSystem() : BALL::RingAnalyser
- isInside() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- isInteger() : BALL::Options
- isInterBond() : BALL::Bond
- isInterBondOf() : BALL::Bond
- isInterior() : BALL::Composite
- isInternal() : BALL::SmartsParser::SPEdge, BALL::SmartsParser::SPNode
- isIntersecting() : BALL::TSimpleBox3< T >
- isIntraBond() : BALL::Bond
- isIntraBondOf() : BALL::Bond
- isKiosk() : BALL::VIEW::UIOperationMode
- isLastChild() : BALL::Composite
- isLastChildOf() : BALL::Composite
- isLess() : BALL::Comparator< T >
- isLessOrEqual() : BALL::Comparator< T >
- isLigandIntraMolecular() : BALL::ScoringComponent
- isLinked() : BALL::ConnectedToPredicate::CTPNode
- isLowerTriangular() : BALL::TMatrix4x4< T >
- isMapped() : BALL::NMRStarFile::BALLToBMRBMapper
- isMaster() : BALL::MPISupport
- isMetal() : BALL::Element
- isMixed() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- isMolecule() : BALL::Composite, BALL::Molecule
- isMonomericPolymer() : BALL::NMRStarFile
- isMutated() : BALL::GeneticIndividual
- isNatural() : BALL::CubicSpline1D
- isNeighbouredTo() : BALL::SESFace
- isNewerThan() : BALL::TimeStamp
- isNextSiblingOf() : BALL::Composite
- isNonRingAtom() : BALL::GAFFCESParser::APSMatcher
- isNormalizationEnabled() : BALL::VIEW::GridColorWidget
- isNot() : BALL::SmartsParser::SPBond, BALL::SmartsParser::SPEdge
- isNotEqual() : BALL::Comparator< T >
- isNRingAtom() : BALL::GAFFCESParser::APSMatcher
- isNSp3() : BALL::PLP
- isNTerminal() : BALL::Residue
- isOK_() : BALL::VIEW::ChainColorProcessor, BALL::VIEW::MoleculeColorProcessor, BALL::VIEW::PositionColorProcessor
- isOlderThan() : BALL::TimeStamp
- isOpen() : BALL::File
- isOrthogonal() : BALL::TRegularData3D< ValueType >
- isOrthogonalTo() : BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- ISOTOPE : BALL::SmartsParser::SPAtom
- isotope_ : BALL::SmilesParser::SPAtom
- isotope_number : BALL::NMRStarFile::ShiftReferenceElement
- isotopic_labeling : BALL::NMRStarFile::Sample::Component
- isParentOf() : BALL::Composite, BALL::ResourceEntry
- isPaused() : BALL::VIEW::RenderSetup
- isPeptideBond() : BALL::ScoringFunction
- isPreviousSiblingOf() : BALL::Composite
- isProtein() : BALL::Composite, BALL::Protein
- isRBegin() : BALL::Atom::BondIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >
- isReadable() : BALL::File
- isReadyToSwap() : BALL::VIEW::RenderSetup
- isReal() : BALL::Options
- isRecording() : BALL::VIEW::Scene
- isRecursive() : BALL::SmartsParser, BALL::SmartsParser::SPNode
- isRedock() : BALL::VIEW::DockDialog, BALL::VIEW::GeometricFitDialog
- isRegister() : BALL::VIEW::RegisterHelpSystemMessage
- isRegistered() : BALL::ShiftModel
- isRegular() : BALL::TMatrix4x4< T >
- isRelatedWith() : BALL::Composite, BALL::ResourceEntry
- isRelativeToCamera() : BALL::VIEW::LightSource
- isREnd() : BALL::Atom::BondIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >
- isResidue() : BALL::Composite, BALL::Residue
- isResponseCentered() : BALL::QSAR::QSARData
- isRingAtom() : BALL::GAFFCESParser::APSMatcher
- isRingAtom_() : BALL::AddHydrogenProcessor
- isRoot() : BALL::Composite, BALL::ResourceEntry
- isRootOf() : BALL::Composite
- isRunning() : BALL::PluginHandler, BALL::TCPServerThread, BALL::Timer
- isSectionEnd() : BALL::INIFile::IteratorTraits_
- isSectionFirstLine() : BALL::INIFile::IteratorTraits_
- isSectionLastLine() : BALL::INIFile::IteratorTraits_
- isSelected() : BALL::Selectable, BALL::VIEW::GeometricObjectSelectionMessage
- isSelectionEnabled() : BALL::ForceField, BALL::ResidueChecker
- isSet() : BALL::Options
- isSiblingOf() : BALL::Composite
- isSimplicial() : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >
- isSingular() : BALL::Atom::BondIteratorTraits, BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashSet< Key >::IteratorTraits, BALL::ResourceEntry::IteratorTraits_, BALL::RSEdge, BALL::RSFace, BALL::TMatrix4x4< T >
- isSolutionNeeded() : BALL::FPTBondOrderStrategy::DPBackTracking_
- isSortedBy() : BALL::DockResult
- isSp3() : BALL::PLP
- isSpace() : BALL::String
- isStarted() : BALL::PyCAPIKernel, BALL::PyKernel
- isStickModel() : BALL::VIEW::AddBallAndStickModel
- isSubAtomContainerOf() : BALL::AtomContainer, BALL::Molecule
- isSuperAtomContainerOf() : BALL::AtomContainer
- isSupported_() : BALL::VIEW::PreferencesEntry
- isSurfaceModel() : BALL::VIEW::ModelInformation
- isSwappingBytes() : BALL::DCDFile, BALL::DSN6File
- isSymmetric() : BALL::TMatrix4x4< T >
- isTerminal() : BALL::Nucleotide, BALL::Residue
- istr_ : BALL::PersistenceManager
- isTrained() : BALL::QSAR::BayesModel, BALL::QSAR::NBModel, BALL::QSAR::SNBModel
- isTransformationEnabled() : BALL::File
- isTransparencyEnabled() : BALL::VIEW::GridColorWidget
- isUnknown() : BALL::Element
- isUpdateRunning() : BALL::VIEW::Scene
- isUpperTriangular() : BALL::TMatrix4x4< T >
- isValid() : BALL::Atom::BondIteratorTraits, BALL::Atom, BALL::AtomContainer, BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::BitVector, BALL::Bond, BALL::Client, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::Composite, BALL::CompositeIteratorTraits, BALL::Directory, BALL::EnergyMinimizer, BALL::EnergyProcessor, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::File, BALL::ForceField, BALL::ForceFieldParameters, BALL::FPTBondOrderStrategy::Assignment_, BALL::FragmentDB, BALL::Gradient, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::HashSet< Key >::IteratorTraits, BALL::INIFile, BALL::INIFile::IteratorTraits_, BALL::MolecularDynamics, BALL::NucleicAcid, BALL::Nucleotide, BALL::Object, BALL::Parameters, BALL::ParameterSection, BALL::PiecewiseFunction, BALL::PropertyManager, BALL::Protein, BALL::PyInterpreter, BALL::RadialDistributionFunction, BALL::RDFIntegrator, BALL::RegularExpression, BALL::Residue, BALL::ResidueRotamerSet, BALL::ResourceEntry, BALL::ResourceEntry::IteratorTraits_, BALL::ResourceFile, BALL::RuleEvaluator, BALL::RuleProcessor, BALL::SecondaryStructure, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::ShiftModel, BALL::ShiftModule, BALL::SnapShot, BALL::SnapShotManager, BALL::SolventDescriptor, BALL::String, BALL::Substring, BALL::TAngle< T >, BALL::TBox3< T >, BALL::TCircle3< T >, BALL::Timer, BALL::TLine3< T >, BALL::TMatrix4x4< T >, BALL::TPlane3< T >, BALL::TSimpleBox3< T >, BALL::TSphere3< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::Box, BALL::VIEW::ConnectionObject, BALL::VIEW::DatasetMessage, BALL::VIEW::Disc, BALL::VIEW::FrameBufferFormat, BALL::VIEW::GeometricObject, BALL::VIEW::GLDisplayList, BALL::VIEW::Label, BALL::VIEW::Line, BALL::VIEW::Mesh, BALL::VIEW::ModelProcessor, BALL::VIEW::MultiLine, BALL::VIEW::Point, BALL::VIEW::PyWidget, BALL::VIEW::Representation, BALL::VIEW::Scene, BALL::VIEW::ServerWidget, BALL::VIEW::ShortcutTableModel, BALL::VIEW::SimpleBox, BALL::VIEW::Sphere, BALL::VIEW::Tube, BALL::VIEW::TwoColoredLine, BALL::VIEW::TwoColoredTube, BALL::VIEW::Vertex2, BALL::VIEW::Vertex
- isvalid() : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- isValid_() : BALL::AromaticityProcessor, BALL::ConnectivityBase, BALL::Descriptor, BALL::PartialChargeBase, BALL::SimpleBase, BALL::SurfaceBase
- isVector() : BALL::Options
- isVicinal() : BALL::Atom
- isWhatsThisEnabled() : BALL::VIEW::HelpViewer
- isWhitespace() : BALL::String
- isWritable() : BALL::File
- isXNatural() : BALL::CubicSpline2D
- isYNatural() : BALL::CubicSpline2D
- isZero() : BALL::TVector2< T >, BALL::TVector3< T >
- it_ : BALL::TContour< T >, BALL::TContourLine< T >
- Item() : BALL::CIFFile::Item
- item_backup_ : BALL::VIEW::AtomOverview
- item_names : BALL::CIFFile::Datablock
- item_to_dataset_ : BALL::VIEW::DatasetController
- item_to_entry_ : BALL::VIEW::Preferences
- item_to_plane_ : BALL::VIEW::GeometricControl
- item_to_representation_ : BALL::VIEW::GeometricControl
- item_to_widget_ : BALL::VIEW::Preferences
- itemActivated() : BALL::VIEW::AtomOverview
- itemChanged() : BALL::VIEW::AtomOverview
- ItemList : BALL::VIEW::GenericControl
- items : BALL::CIFFile::SaveFrame
- iteration_ : BALL::GeneticAlgorithm
- ITERATIONS : BALL::IMGDock::Default, BALL::IMGDock::Option
- Iterator : BALL::AtomVector, BALL::ConnectedToPredicate::CTPNode, BALL::EdgeItem< Node, Edge >, BALL::Enumerator< Container, SiteIterator, Variant >, BALL::ExpressionParser::SyntaxTree, BALL::Gradient, BALL::HashMap< Key, T >, BALL::HashSet< Key >, BALL::List< Value >, BALL::NodeItem< Node, Edge >, BALL::PDBRecords, BALL::PeakList< PT >, BALL::PyColorRGBAVector, BALL::PyCompositeList, BALL::PyDatasetVector, BALL::PyIndexList, BALL::ResidueRotamerSet, BALL::ResourceEntry, BALL::ResourceFile, BALL::Spectrum< DataT, PeakT, PositionT >, BALL::StringHashMap< Value >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- iterator : BALL::FPTBondOrderStrategy::DPTable_, BALL::HashSet< Key >, BALL::List< Value >, BALL::PDBRecords, BALL::ResidueRotamerSet, BALL::String, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::CompositeManager
- iterator_category : BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstForwardIterator< Container, DataType, Position, Traits >, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >
- IteratorPosition : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::HashSet< Key >, BALL::ResourceEntry
- IteratorTraits : BALL::HashSet< Key >, BALL::HashSet< Key >::IteratorTraits
- IteratorTraits_ : BALL::Enumerator< Container, SiteIterator, Variant >, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::INIFile::IteratorTraits_, BALL::INIFile::Section, BALL::ResourceEntry, BALL::ResourceEntry::IteratorTraits_