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BALL::AtomContainer Member List

This is the complete list of members for BALL::AtomContainer, including all inherited members.

AncestorConstIterator typedef | BALL::Composite |
AncestorIterator typedef | BALL::Composite |
append(Atom &atom) | BALL::AtomContainer |
append(AtomContainer &atom_container) | BALL::AtomContainer |
appendChild(Composite &composite) | BALL::Composite |
apply(UnaryProcessor< T > &processor) | BALL::Composite |
apply(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
apply(UnaryProcessor< T > &processor) | BALL::Composite |
apply(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyAncestor(UnaryProcessor< T > &processor) | BALL::Composite |
applyAncestor(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyChild(UnaryProcessor< T > &processor) | BALL::Composite |
applyChild(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyDescendant(UnaryProcessor< T > &processor) | BALL::Composite |
applyDescendant(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyDescendantPostorder(UnaryProcessor< T > &processor) | BALL::Composite |
applyDescendantPostorder(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyDescendantPreorder(UnaryProcessor< T > &processor) | BALL::Composite |
applyDescendantPreorder(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyInterBond(UnaryProcessor< Bond > &processor) | BALL::AtomContainer |
applyIntraBond(UnaryProcessor< Bond > &processor) | BALL::AtomContainer |
applyLevel(UnaryProcessor< T > &processor, long level) | BALL::Composite |
applyLevel(ConstUnaryProcessor< T > &processor, long level) const | BALL::Composite |
applyPostorder(UnaryProcessor< T > &processor) | BALL::Composite |
applyPostorder(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyPreorder(UnaryProcessor< T > &processor) | BALL::Composite |
applyPreorder(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
AtomContainer() | BALL::AtomContainer |
AtomContainer(const AtomContainer &atom_container, bool deep=true) | BALL::AtomContainer |
AtomContainer(const String &name) | BALL::AtomContainer |
AutoDeletable() | BALL::AutoDeletable | protected
AutoDeletable(const AutoDeletable &auto_deletable, bool deep=false) | BALL::AutoDeletable | protected
beginAncestor() | BALL::Composite | inline
beginAncestor() const | BALL::Composite | inline
beginChildComposite() | BALL::Composite | inline
beginChildComposite() const | BALL::Composite | inline
beginComposite() | BALL::Composite | inline
beginComposite() const | BALL::Composite | inline
beginNamedProperty() | BALL::PropertyManager |
BOTH enum value | BALL::Composite |
ChildCompositeConstIterator typedef | BALL::Composite |
ChildCompositeConstReverseIterator typedef | BALL::Composite |
ChildCompositeIterator typedef | BALL::Composite |
ChildCompositeReverseIterator typedef | BALL::Composite |
clear() | BALL::AtomContainer | virtual
clearLastPtr() | BALL::AutoDeletable | inline static
clearProperty(Property property) | BALL::PropertyManager |
clearProperty(const std::string &name) | BALL::PropertyManager |
clone(Composite &root) const | BALL::Composite |
compare(const Object &object) const | BALL::Object |
Composite() | BALL::Composite |
Composite(const Composite &composite, bool deep=true) | BALL::Composite |
CompositeConstIterator typedef | BALL::Composite |
CompositeConstReverseIterator typedef | BALL::Composite |
CompositeIterator typedef | BALL::Composite |
CompositeReverseIterator typedef | BALL::Composite |
containsSelection() const | BALL::Composite |
count(const KernelPredicateType &predicate) const | BALL::Composite |
countAtomContainers() const | BALL::AtomContainer |
countAtoms() const | BALL::AtomContainer |
countBonds() const | BALL::AtomContainer |
countDescendants() const | BALL::Composite |
countInterBonds() const | BALL::AtomContainer |
countIntraBonds() const | BALL::AtomContainer |
countNamedProperties() const | BALL::PropertyManager |
countProperties() const | BALL::PropertyManager |
DEFAULT_PROCESSOR | BALL::Composite | static
DEFAULT_UNARY_PREDICATE | BALL::Composite | static
deleteChildrenList_(std::list< Composite * > &composites) | BALL::Composite |
deselect() | BALL::Composite | virtual
destroy() | BALL::AtomContainer | virtual
BALL::Composite::destroy(bool virtual_destroy) | BALL::Composite |
destroyBonds() | BALL::AtomContainer |
dump(std::ostream &s=std::cout, Size depth=0) const | BALL::AtomContainer | virtual
BALL::PersistentObject::dump(::std::ostream &s=std::cout, Size depth=0) const | BALL::Object | virtual
BALL::Selectable::dump(::std::ostream &s=std::cout, Size depth=0) const | BALL::Selectable | virtual
endAncestor() | BALL::Composite | inline
endAncestor() const | BALL::Composite | inline
endChildComposite() | BALL::Composite | inline
endChildComposite() const | BALL::Composite | inline
endComposite() | BALL::Composite | inline
endComposite() const | BALL::Composite | inline
endNamedProperty() | BALL::PropertyManager |
finalize() | BALL::PersistentObject | inline virtual
get(AtomContainer &atom_container, bool deep=true) const | BALL::AtomContainer |
BALL::Composite::get(Composite &composite, bool deep=true) const | BALL::Composite |
BALL::Selectable::get(Selectable &selectable, bool deep=true) const | BALL::Selectable |
BALL::PropertyManager::get(PropertyManager &property_manager) const | BALL::PropertyManager |
getAncestor(const T &) | BALL::Composite |
getAncestor(const T &) const | BALL::Composite |
getAncestor(const T &) | BALL::Composite |
getAncestor(const T &) const | BALL::Composite |
getAtom(Position position) | BALL::AtomContainer |
getAtom(Position position) const | BALL::AtomContainer |
getAtom(const String &name) | BALL::AtomContainer |
getAtom(const String &name) const | BALL::AtomContainer |
getAtomContainer(Position position) | BALL::AtomContainer |
getAtomContainer(Position position) const | BALL::AtomContainer |
getBitVector() | BALL::PropertyManager |
getBitVector() const | BALL::PropertyManager |
getChild(Index index) | BALL::Composite |
getChild(Index index) const | BALL::Composite |
getDegree() const | BALL::Composite |
getDepth() const | BALL::Composite |
getFirstChild() | BALL::Composite |
getFirstChild() const | BALL::Composite |
getHandle() const | BALL::Object |
getHeight() const | BALL::Composite |
getLastChild() | BALL::Composite |
getLastChild() const | BALL::Composite |
getLowestCommonAncestor(const Composite &composite) | BALL::Composite |
getLowestCommonAncestor(const Composite &composite) const | BALL::Composite |
getModificationTime() const | BALL::Composite |
getName() const | BALL::AtomContainer |
getNamedProperty(Position index) const | BALL::PropertyManager |
getNamedProperty(Position index) | BALL::PropertyManager |
getNewHandle() | BALL::Object | static
getNext(const T &) | BALL::Composite |
getNext(const T &dummy) const | BALL::Composite |
getNext(const T &) | BALL::Composite |
getNext(const T &dummy) const | BALL::Composite |
getNextHandle() | BALL::Object | static
getParent() | BALL::Composite |
getParent() const | BALL::Composite |
getPathLength(const Composite &composite) const | BALL::Composite |
getPrevious(const T &) | BALL::Composite |
getPrevious(const T &dummy) const | BALL::Composite |
getPrevious(const T &) | BALL::Composite |
getPrevious(const T &dummy) const | BALL::Composite |
getProperty(const std::string &name) const | BALL::PropertyManager |
getRoot() | BALL::Composite |
getRoot() const | BALL::Composite |
getSelectionTime() const | BALL::Composite |
getSibling(Index index) | BALL::Composite |
getSibling(Index index) const | BALL::Composite |
getSuperAtomContainer() | BALL::AtomContainer |
getSuperAtomContainer() const | BALL::AtomContainer |
hasAncestor(const T &dummy) const | BALL::Composite |
hasAncestor(const T &dummy) const | BALL::Composite |
hasChild() const | BALL::Composite |
hasNextSibling() const | BALL::Composite |
hasParent() const | BALL::Composite |
hasPreviousSibling() const | BALL::Composite |
hasProperty(Property property) const | BALL::PropertyManager |
hasProperty(const std::string &name) const | BALL::PropertyManager |
hasSibling() const | BALL::Composite |
host(Visitor< Composite > &visitor) | BALL::Composite |
insert(Atom &atom) | BALL::AtomContainer |
insert(AtomContainer &atom_container) | BALL::AtomContainer |
insertAfter(Atom &atom, Composite &after) | BALL::AtomContainer |
insertAfter(AtomContainer &atom_container, Composite &after) | BALL::AtomContainer |
BALL::Composite::insertAfter(Composite &composite) | BALL::Composite |
insertBefore(Atom &atom, Composite &before) | BALL::AtomContainer |
insertBefore(AtomContainer &atom_container, Composite &before) | BALL::AtomContainer |
BALL::Composite::insertBefore(Composite &composite) | BALL::Composite |
insertParent(Composite &parent, Composite &first, Composite &last, bool destroy_parent=true) | BALL::Composite | static
isAncestorOf(const Composite &composite) const | BALL::Composite |
isAtom() const | BALL::Composite | inline virtual
isAutoDeletable() const | BALL::AutoDeletable |
isChain() const | BALL::Composite | inline virtual
isChildOf(const Composite &composite) const | BALL::Composite |
isDescendantOf(const Composite &composite) const | BALL::Composite |
isEmpty() const | BALL::Composite |
isFirstChild() const | BALL::Composite |
isFirstChildOf(const Composite &composite) const | BALL::Composite |
isFragment() const | BALL::Composite | inline virtual
isHomomorph(const Composite &composite) const | BALL::Composite |
isInterior() const | BALL::Composite |
isLastChild() const | BALL::Composite |
isLastChildOf(const Composite &composite) const | BALL::Composite |
isMolecule() const | BALL::Composite | inline virtual
isNextSiblingOf(const Composite &composite) const | BALL::Composite |
isParentOf(const Composite &composite) const | BALL::Composite |
isPreviousSiblingOf(const Composite &composite) const | BALL::Composite |
isProtein() const | BALL::Composite | inline virtual
isRelatedWith(const Composite &composite) const | BALL::Composite |
isResidue() const | BALL::Composite | inline virtual
isRoot() const | BALL::Composite |
isRootOf(const Composite &composite) const | BALL::Composite |
isSelected() const | BALL::Selectable |
isSiblingOf(const Composite &composite) const | BALL::Composite |
isSubAtomContainerOf(const AtomContainer &atom_container) const | BALL::AtomContainer |
isSuperAtomContainerOf(const AtomContainer &atom_container) const | BALL::AtomContainer |
isValid() const | BALL::AtomContainer | virtual
KernelPredicateType typedef | BALL::Composite |
MODIFICATION enum value | BALL::Composite |
NUMBER_OF_PROPERTIES enum value | BALL::AtomContainer |
Object() | BALL::Object |
Object(const Object &object) | BALL::Object |
operator BitVector &() | BALL::PropertyManager |
operator delete(void *ptr) | BALL::AutoDeletable |
operator delete(void *ptr, void *) | BALL::AutoDeletable |
operator new(size_t size) | BALL::AutoDeletable |
operator new(size_t size, void *ptr) | BALL::AutoDeletable |
operator!=(const AtomContainer &atom_container) const | BALL::AtomContainer |
BALL::Composite::operator!=(const Composite &composite) const | BALL::Composite |
BALL::PersistentObject::operator!=(const Object &object) const | BALL::Object |
BALL::Selectable::operator!=(const Selectable &selectable) const | BALL::Selectable |
BALL::PropertyManager::operator!=(const PropertyManager &pm) const | BALL::PropertyManager |
operator<(const Object &object) const | BALL::Object |
operator<=(const Object &object) const | BALL::Object |
operator=(const AtomContainer &atom_container) | BALL::AtomContainer |
BALL::Composite::operator=(const Composite &composite) | BALL::Composite |
BALL::PersistentObject::operator=(const Object &) | BALL::Object |
BALL::Selectable::operator=(const Selectable &selectable) | BALL::Selectable |
BALL::PropertyManager::operator=(const PropertyManager &property_manager) | BALL::PropertyManager |
operator==(const AtomContainer &atom_container) const | BALL::AtomContainer |
BALL::Composite::operator==(const Composite &composite) const | BALL::Composite |
BALL::PersistentObject::operator==(const Object &object) const | BALL::Object |
BALL::Selectable::operator==(const Selectable &selectable) const | BALL::Selectable |
BALL::PropertyManager::operator==(const PropertyManager &pm) const | BALL::PropertyManager |
operator>(const Object &object) const | BALL::Object |
operator>=(const Object &object) const | BALL::Object |
operator>>(PersistenceManager &pm) const | BALL::PersistentObject |
PersistentObject() | BALL::PersistentObject | inline
persistentRead(PersistenceManager &pm) | BALL::AtomContainer | virtual
persistentWrite(PersistenceManager &pm, const char *name=0) const | BALL::AtomContainer | virtual
prepend(Atom &atom) | BALL::AtomContainer |
prepend(AtomContainer &atom_container) | BALL::AtomContainer |
prependChild(Composite &composite) | BALL::Composite |
Property enum name | BALL::AtomContainer |
PropertyManager() | BALL::PropertyManager |
PropertyManager(const PropertyManager &property_manager) | BALL::PropertyManager |
rbeginChildComposite() | BALL::Composite | inline
rbeginChildComposite() const | BALL::Composite | inline
rbeginComposite() | BALL::Composite | inline
rbeginComposite() const | BALL::Composite | inline
BALL::read(PersistenceManager &pm) | BALL::Selectable |
BALL::PropertyManager::read(PersistenceManager &pm) | BALL::PropertyManager |
remove(Atom &atom) | BALL::AtomContainer |
remove(AtomContainer &atom_container) | BALL::AtomContainer |
removeChild(Composite &child) | BALL::Composite |
removeHavingProperty(BALL::Property p) | BALL::AtomContainer |
removeHavingProperty(const string &name) | BALL::AtomContainer |
removeNotHavingProperty(BALL::Property p) | BALL::AtomContainer |
removeNotHavingProperty(const string &name) | BALL::AtomContainer |
removeSelected() | BALL::Composite |
removeUnselected() | BALL::Composite |
rendChildComposite() | BALL::Composite | inline
rendChildComposite() const | BALL::Composite | inline
rendComposite() | BALL::Composite | inline
rendComposite() const | BALL::Composite | inline
replace(Composite &composite) | BALL::Composite |
select() | BALL::Composite | virtual
Selectable() | BALL::Selectable |
Selectable(const Selectable &selectable, bool deep=true) | BALL::Selectable |
selected_ | BALL::Selectable | protected
SELECTION enum value | BALL::Composite |
set(const AtomContainer &atom_container, bool deep=true) | BALL::AtomContainer |
BALL::Composite::set(const Composite &composite, bool deep=true) | BALL::Composite |
BALL::Selectable::set(const Selectable &selectable, bool deep=true) | BALL::Selectable |
BALL::PropertyManager::set(const PropertyManager &property_manager) | BALL::PropertyManager |
setAutoDeletable(bool enable) | BALL::AutoDeletable |
setName(const String &name) | BALL::AtomContainer |
setProperty(Property property) | BALL::PropertyManager |
setProperty(const NamedProperty &property) | BALL::PropertyManager |
setProperty(const std::string &name) | BALL::PropertyManager |
setProperty(const std::string &name, bool value) | BALL::PropertyManager |
setProperty(const std::string &name, int value) | BALL::PropertyManager |
setProperty(const std::string &name, unsigned int value) | BALL::PropertyManager |
setProperty(const std::string &name, float value) | BALL::PropertyManager |
setProperty(const std::string &name, double value) | BALL::PropertyManager |
setProperty(const std::string &name, const std::string &value) | BALL::PropertyManager |
setProperty(const std::string &name, const PersistentObject &value) | BALL::PropertyManager |
setSelected(bool selected) | BALL::Selectable | inline virtual
splice(AtomContainer &atom_container) | BALL::AtomContainer |
BALL::Composite::splice(Composite &composite) | BALL::Composite |
spliceAfter(AtomContainer &atom_container) | BALL::AtomContainer |
BALL::Composite::spliceAfter(Composite &composite) | BALL::Composite |
spliceBefore(AtomContainer &atom_container) | BALL::AtomContainer |
BALL::Composite::spliceBefore(Composite &composite) | BALL::Composite |
stamp(StampType stamp=BOTH) | BALL::Composite |
StampType enum name | BALL::Composite |
swap(AtomContainer &atom_container) | BALL::AtomContainer |
BALL::Composite::swap(Composite &composite) | BALL::Composite |
BALL::Selectable::swap(Selectable &selectable) | BALL::Selectable |
BALL::PropertyManager::swap(PropertyManager &property_manager) | BALL::PropertyManager |
toggleProperty(Property property) | BALL::PropertyManager |
BALL::write(PersistenceManager &pm) const | BALL::Selectable |
BALL::PropertyManager::write(PersistenceManager &pm) const | BALL::PropertyManager |
~AtomContainer() | BALL::AtomContainer | virtual
~AutoDeletable() | BALL::AutoDeletable | virtual
~Composite() | BALL::Composite | virtual
~Object() | BALL::Object | virtual
~PersistentObject() | BALL::PersistentObject | inline virtual
~PropertyManager() | BALL::PropertyManager | virtual
~Selectable() | BALL::Selectable | virtual