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BALL::DCDFile Member List

This is the complete list of members for BALL::DCDFile, including all inherited members.

adapt_float_ | BALL::DCDFile | protected
adapt_size_ | BALL::DCDFile | protected
append(const SnapShot &snapshot) | BALL::DCDFile | virtual
charmm_extra_block_A_ | BALL::DCDFile | protected
charmm_extra_block_B_ | BALL::DCDFile | protected
clear() | BALL::DCDFile | virtual
close() | BALL::File |
copy(String source_name, String destination_name, Size buffer_size=4096) | BALL::File | static
copyTo(const String &destination_name, Size buffer_size=4096) | BALL::File |
CORD_ | BALL::DCDFile | protected
created_temp_filenames_ | BALL::File | protected static
createTemporaryFilename(String &temporary, const String &suffix=".TMP") | BALL::File | static
current_snapshot_ | BALL::DCDFile | protected
DCDFile() | BALL::DCDFile |
DCDFile(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::DCDFile |
disableTransformation(Transformation transformation) | BALL::File | static
disableVelocityStorage() | BALL::DCDFile |
enableTransformation(Transformation transformation) | BALL::File | static
enableVelocityStorage() | BALL::DCDFile |
File() | BALL::File |
File(const String &name, OpenMode open_mode=std::ios::in) | BALL::File |
flushToDisk(const std::vector< SnapShot > &buffer) | BALL::DCDFile | virtual
getFileStream() | BALL::File |
getName() const | BALL::File |
getNumberOfAtoms() const | BALL::TrajectoryFile |
getNumberOfSnapShots() | BALL::TrajectoryFile | virtual
getOpenMode() const | BALL::File |
getOriginalName() const | BALL::File |
getSize() | BALL::File |
getSize(String name) | BALL::File | static
getTransformationManager() | BALL::File |
getTransformationManager() const | BALL::File |
getType(String name, bool trace_link) | BALL::File | static
getType(bool trace_link) const | BALL::File |
has_velocities_ | BALL::DCDFile | protected
hasVelocities() const | BALL::DCDFile |
init() | BALL::DCDFile |
is_open_ | BALL::File | protected
is_temporary_ | BALL::File | protected
isAccessible(String name) | BALL::File | static
isAccessible() const | BALL::File |
isCanonized() const | BALL::File |
isClosed() const | BALL::File |
isExecutable(String name) | BALL::File | static
isExecutable() const | BALL::File |
isOpen() const | BALL::File |
isReadable(String name) | BALL::File | static
isReadable() const | BALL::File |
isSwappingBytes() const | BALL::DCDFile |
isTransformationEnabled(Transformation transformation) | BALL::File | static
isValid() const | BALL::File |
isWritable(String name) | BALL::File | static
isWritable() const | BALL::File |
MODE_APP | BALL::File | static
MODE_ATE | BALL::File | static
MODE_BINARY | BALL::File | static
MODE_IN | BALL::File | static
MODE_OUT | BALL::File | static
MODE_TRUNC | BALL::File | static
move(const String &source_name, const String &destination_name) | BALL::File | static
moveTo(const String &destination_name) | BALL::File |
name_ | BALL::File | protected
number_of_atoms_ | BALL::TrajectoryFile | protected
number_of_comments_ | BALL::DCDFile | protected
number_of_snapshots_ | BALL::TrajectoryFile | protected
open(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::DCDFile | virtual
open_mode_ | BALL::File | protected
OpenMode typedef | BALL::File |
operator!=(const File &file) const | BALL::File |
operator==(const DCDFile &file) const | BALL::DCDFile |
BALL::TrajectoryFile::operator==(const TrajectoryFile &file) const | BALL::TrajectoryFile |
BALL::File::operator==(const File &file) const | BALL::File |
original_name_ | BALL::File | protected
read(SnapShot &snapshot) | BALL::DCDFile | virtual
readFloat_() | BALL::DCDFile | protected
readHeader() | BALL::DCDFile | virtual
readSize_() | BALL::DCDFile | protected
readSize_(Size expected_size, const String &what) | BALL::DCDFile | protected
readVector_(vector< Vector3 > &v) | BALL::DCDFile | protected
registerTransformation(const String &pattern, const String &exec) | BALL::File | static
remove(String name) | BALL::File | static
remove() | BALL::File |
rename(String old_path, String new_path) | BALL::File | static
renameTo(const String &new_path) | BALL::File |
reopen() | BALL::File |
reopen(File::OpenMode open_mode) | BALL::File |
seekAndWriteHeader() | BALL::DCDFile | virtual
setName(const String &name) | BALL::File |
step_number_of_starting_time_ | BALL::DCDFile | protected
steps_between_saves_ | BALL::DCDFile | protected
swap_bytes_ | BALL::DCDFile | protected
time_step_length_ | BALL::DCDFile | protected
TrajectoryFile() | BALL::TrajectoryFile |
TrajectoryFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::TrajectoryFile |
Transformation enum name | BALL::File |
TRANSFORMATION__EXEC enum value | BALL::File |
TRANSFORMATION__FILTER enum value | BALL::File |
TRANSFORMATION__URL enum value | BALL::File |
TRANSFORMATION_EXEC_PREFIX | BALL::File | static
TRANSFORMATION_FILE_PREFIX | BALL::File | static
TRANSFORMATION_FTP_PREFIX | BALL::File | static
TRANSFORMATION_HTTP_PREFIX | BALL::File | static
transformation_manager_ | BALL::File | protected static
transformation_methods_ | BALL::File | protected static
truncate(String path, Size size=0) | BALL::File | static
truncate(Size size=0) | BALL::File |
Type enum name | BALL::File |
TYPE__BLOCK_SPECIAL_FILE enum value | BALL::File |
TYPE__CHAR_SPECIAL_FILE enum value | BALL::File |
TYPE__DIRECTORY enum value | BALL::File |
TYPE__FIFO_SPECIAL_FILE enum value | BALL::File |
TYPE__REGULAR_FILE enum value | BALL::File |
TYPE__SOCKET enum value | BALL::File |
TYPE__SYMBOLIC_LINK enum value | BALL::File |
TYPE__UNKNOWN enum value | BALL::File |
unregisterTransformation(const String &pattern) | BALL::File | static
verbosity_ | BALL::DCDFile | protected
writeFloat_(const float &data) | BALL::DCDFile | inline protected
writeHeader() | BALL::DCDFile | virtual
writeSize_(const Size &data) | BALL::DCDFile | inline protected
writeVector_(const vector< Vector3 > &v) | BALL::DCDFile | protected
~DCDFile() | BALL::DCDFile | virtual
~File() | BALL::File | virtual
~TrajectoryFile() | BALL::TrajectoryFile | virtual