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Here is a list of all class members with links to the classes they belong to:

### - r -

- R : BALL::Constant
- r : BALL::FDPB::FastAtomStruct
- r0 : BALL::MMFF94StretchBend::Stretch, BALL::MMFF94StretchParameters::EmpiricalBondData, BALL::QuadraticBondStretch::Values
- r0_ : BALL::QuadraticBondStretch
- r0_normal : BALL::MMFF94StretchParameters::BondData
- r0_sbmb : BALL::MMFF94StretchParameters::BondData
- r_direction_ : BALL::VIEW::LightSource
- R_ij_o_ : BALL::PairExpRDFIntegrator
- r_max_ : BALL::ReducedSurface
- r_min : BALL::CharmmEEF1::Values
- R_min_ : BALL::CharmmEEF1
- r_position_ : BALL::VIEW::LightSource
- Ra : BALL::Element
- RAD_PER_DEG : BALL::Constant
- RadialDistributionFunction() : BALL::RadialDistributionFunction
- radii : BALL::MMFF94StretchParameters
- radii_ : BALL::ElectrostaticPotentialCalculator
- RADIUM : BALL::Element
- radius : BALL::JohnsonBoveyShiftProcessor::Ring, BALL::SolventAtomDescriptor, BALL::TCircle3< T >, BALL::TSphere3< T >
- radius_ : BALL::Atom, BALL::VIEW::HBondModelProcessor
- radius_a_ : BALL::GeometricFit
- radius_b_ : BALL::GeometricFit
- RADIUS_CARBON : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- radius_factor_ : BALL::VIEW::AddVanDerWaalsModel
- RADIUS_HYDROGEN : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- RADIUS_NITROGEN : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- radius_of_torus_ : BALL::RSEdge
- radius_offset_ : BALL::SurfaceProcessor
- RADIUS_OXYGEN : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- radius_processor_ : BALL::VIEW::FDPBDialog
- radius_rule_processor_ : BALL::VIEW::FDPBDialog
- RADIUS_SULFUR : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- RadiusRuleProcessor() : BALL::RadiusRuleProcessor
- RADON : BALL::Element
- RANDOM : BALL::VIEW::DockingController
- RandomAccessIterator() : BALL::RandomAccessIterator< Container, DataType, Position, Traits >
- RandomCoilShiftProcessor() : BALL::RandomCoilShiftProcessor
- RandomEvaluation() : BALL::RandomEvaluation
- randomGenePosition() : BALL::GenericGene
- randomGeneValue() : BALL::GenericGene
- randomize() : BALL::DoubleGene, BALL::GenericGene, BALL::GeneticIndividual, BALL::QuaternionGene
- Range : BALL::TAngle< T >
- RANGE__SIGNED : BALL::TAngle< T >
- RANGE__UNLIMITED : BALL::TAngle< T >
- RANGE__UNSIGNED : BALL::TAngle< T >
- rank_ : BALL::MPISupport
- RANK_1 : BALL::ShiftedLVMMMinimizer
- RANK_2 : BALL::ShiftedLVMMMinimizer
- RATIO_OF_SHIFT_PARAMS : BALL::ShiftedLVMMMinimizer
- RaytraceableContourSurfaceDialog() : BALL::VIEW::RaytraceableContourSurfaceDialog
- RaytraceableGrid() : BALL::VIEW::RaytraceableGrid
- RaytraceableGridController() : BALL::VIEW::RaytraceableGridController
- Rb : BALL::Element
- rb_ : BALL::DockProblem, BALL::VIEW::Scene
- rbegin() : BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::Gradient, BALL::PDBRecords, BALL::RandomAccessIterator< Container, DataType, Position, Traits >, BALL::String
- rbeginBond() : BALL::Atom
- rbeginChildComposite() : BALL::Composite
- rbeginComposite() : BALL::Composite
- rdbuf() : BALL::LogStream
- rdf_ : BALL::RDFIntegrator, BALL::RDFSection
- RDF_FILENAME : BALL::Pair6_12InteractionEnergyProcessor::Default, BALL::Pair6_12InteractionEnergyProcessor::Option, BALL::PairExpInteractionEnergyProcessor::Default, BALL::PairExpInteractionEnergyProcessor::Option
- rdf_indices_ : BALL::RDFParameter
- rdf_integrator_ : BALL::Pair6_12InteractionEnergyProcessor
- rdf_list_ : BALL::RDFParameter
- rdf_parameter_ : BALL::Pair6_12InteractionEnergyProcessor, BALL::PairExpInteractionEnergyProcessor
- RDFIntegrator() : BALL::RDFIntegrator
- RDFParameter() : BALL::RDFParameter
- RDFSection() : BALL::RDFSection
- Re : BALL::Element
- reacting_center_status : BALL::MOLFile::BondStruct
- reaction_component_number : BALL::MOLFile::AtomStruct
- reaction_component_type : BALL::MOLFile::AtomStruct
- reaction_field_energy_ : BALL::FDPB
- reactTo() : BALL::VIEW::PyWidget
- reactToMessages_() : BALL::VIEW::MolecularControl
- read() : BALL::AmiraMeshFile, BALL::AntechamberFile, BALL::BitVector, BALL::Bruker1DFile, BALL::Bruker2DFile, BALL::CCP4File, BALL::CIFFile, BALL::DCDFile, BALL::DockResultFile, BALL::DSN6File, BALL::GAFFCESParser, BALL::GAMESSDatFile, BALL::GAMESSLogFile, BALL::GenericMolFile, BALL::HINFile, BALL::HMOFile, BALL::INIFile, BALL::JCAMPFile, BALL::KCFFile, BALL::MOL2File, BALL::MOLFile, BALL::MOPACOutputFile, BALL::NMRStarFile, BALL::Options, BALL::PDBFile, BALL::PreciseTime, BALL::PropertyManager, BALL::SDFile, BALL::Selectable, BALL::TimeStamp, BALL::TrajectoryFile, BALL::TRRFile, BALL::TVector3< T >, BALL::XYZFile
- read_all_pdb_models_ : BALL::VIEW::MolecularFileDialog
- read_atoms_ : BALL::SDFile
- read_done_ : BALL::PDBFile
- read_sd_descriptors : BALL::QSAR::InputConfiguration
- read_start_ : BALL::GAFFCESParser
- readACFile() : BALL::VIEW::MolecularFileDialog
- readAdditionalGridSetFromFile() : BALL::GridBasedScoring
- readAndInitBondAnglesFromFile_() : BALL::HybridisationProcessor
- readAtomLine_() : BALL::MOLFile
- readAtomPenalties_() : BALL::AssignBondOrderProcessor
- readAtomSection_() : BALL::MOL2File
- readAtomTypeSmartsFromFile_() : BALL::HybridisationProcessor
- readBinValueasFloat_() : BALL::CCP4File
- readBinValueasInt_() : BALL::CCP4File
- readBondLengthsFromFile_() : BALL::BuildBondsProcessor
- readBondLine_() : BALL::MOLFile
- readBondSection_() : BALL::MOL2File
- readChargeData_() : BALL::HMOFile
- readClassInformationFromFile() : BALL::QSAR::ClassificationModel
- readCommentSection_() : BALL::MOL2File
- readConversionTable_() : BALL::Peptides::NameConverter
- readCountsLine_() : BALL::MOLFile
- readCSVFile() : BALL::QSAR::QSARData
- readCTAB_() : BALL::MOLFile
- readDCDFile() : BALL::ConformationSet
- readDELIMITER_() : BALL::KCFFile
- readDescriptorInformation() : BALL::QSAR::Model
- readDescriptorInformationFromFile() : BALL::QSAR::Model, BALL::QSAR::RegressionModel
- readDockResult() : BALL::DockResult
- readEDGE_() : BALL::KCFFile
- readElementData_() : BALL::HMOFile
- readEmpiricalParameters() : BALL::MMFF94ESParameters, BALL::MMFF94StretchBendParameters, BALL::MMFF94StretchParameters
- readENTRY_() : BALL::KCFFile
- readFeatureSelectionConfiguration() : BALL::QSAR::ConfigIO
- readFiles() : BALL::VIEW::MolecularFileDialog
- readFirstRecord() : BALL::PDBFile
- readFloat_() : BALL::DCDFile
- readFromFile() : BALL::QSAR::ALLModel, BALL::QSAR::ClassificationValidation, BALL::QSAR::KernelModel, BALL::QSAR::LDAModel, BALL::QSAR::LogitModel, BALL::QSAR::Model, BALL::QSAR::NBModel, BALL::QSAR::QSARData, BALL::QSAR::RegressionModel, BALL::QSAR::RegressionValidation, BALL::QSAR::SNBModel, BALL::QSAR::Validation, BALL::ScoreGridSet, BALL::SnapShotManager
- readFromString() : BALL::VIEW::Camera
- readHeader() : BALL::AmiraMeshFile, BALL::CCP4File, BALL::DCDFile, BALL::DSN6File, BALL::TrajectoryFile, BALL::TRRFile
- readHeaderValue_() : BALL::DSN6File
- readHINFile() : BALL::VIEW::MolecularFileDialog
- readInputConfiguration() : BALL::QSAR::ConfigIO
- readInputPartitioningConfiguration() : BALL::QSAR::ConfigIO
- readInvalidRecord() : BALL::PDBFile
- readKernelParametersFromFile() : BALL::QSAR::KernelModel
- readLabels() : BALL::QSAR::ClassificationModel
- readLigand() : BALL::DockResultFile
- readLights_() : BALL::VIEW::Scene
- readLine() : BALL::LineBasedFile, BALL::PDBFile
- readMatrix() : BALL::QSAR::Model, BALL::QSAR::QSARData
- readModelConfiguration() : BALL::QSAR::ConfigIO
- readModelParametersFromFile() : BALL::QSAR::Model
- readMOL2File() : BALL::VIEW::MolecularFileDialog
- readMoleculeSection_() : BALL::MOL2File
- readMOLFile() : BALL::VIEW::MolecularFileDialog
- readMSMSFile() : BALL::TSurface< T >
- readNextHeader() : BALL::TRRFile
- readNextRecord() : BALL::PDBFile
- readNODE_() : BALL::KCFFile
- readNodeData_() : BALL::HMOFile
- readObject() : BALL::PersistenceManager
- readObjectArray() : BALL::PersistenceManager
- readObjectPointer() : BALL::PersistenceManager
- readObjectPointerArray() : BALL::PersistenceManager
- readObjectReference() : BALL::PersistenceManager
- readObjectSmartPointer() : BALL::PersistenceManager
- readOptionFile() : BALL::DockingAlgorithm, BALL::Options
- readOptions() : BALL::AStarBondOrderStrategy, BALL::BondOrderAssignmentStrategy, BALL::BranchAndBoundBondOrderStrategy, BALL::FPTBondOrderStrategy, BALL::ILPBondOrderStrategy, BALL::KGreedyBondOrderStrategy
- readOptions_() : BALL::AssignBondOrderProcessor, BALL::SideChainPlacementProcessor
- readParameters() : BALL::MMFF94ParametersBase
- readPDBFile() : BALL::VIEW::MolecularFileDialog
- readPredictionConfiguration() : BALL::QSAR::ConfigIO
- readPreferenceEntries() : BALL::VIEW::ColoringSettingsDialog, BALL::VIEW::MainControlPreferences, BALL::VIEW::PluginDialog, BALL::VIEW::PreferencesEntry, BALL::VIEW::PythonSettings
- readPrimitive() : BALL::PersistenceManager
- readPropertyBlock_() : BALL::SDFile
- readPropertyNames() : BALL::QSAR::QSARData
- readPseudoAtomsConversionTable_() : BALL::Peptides::NameConverter
- readReceptor() : BALL::DockResultFile
- readRecords() : BALL::PDBFile
- readResponseTransformationFromFile() : BALL::QSAR::Model
- readResults() : BALL::DockResultFile
- readScalingFactors() : BALL::GeneralizedBornModel
- readSCWRLBackboneDependentLibraryFile() : BALL::SCWRLRotamerFile
- readSCWRLBackboneIndependentLibraryFile() : BALL::SCWRLRotamerFile
- readSDFile() : BALL::QSAR::QSARData, BALL::VIEW::MolecularFileDialog
- readSection() : BALL::ParamFile
- readSetSection_() : BALL::MOL2File
- readShortcutsFromFile() : BALL::VIEW::ShortcutRegistry
- readSize_() : BALL::DCDFile
- readStorableObject() : BALL::PersistenceManager
- readSubstructureSection_() : BALL::MOL2File
- readSymmetryRecords() : BALL::CCP4File
- readTrainingData() : BALL::QSAR::Model
- readTrainingResult() : BALL::QSAR::KernelModel
- readTransformationsFromFile_() : BALL::PoseClustering
- readUnknownRecord() : BALL::PDBFile
- readUntil_() : BALL::HMOFile
- readValidationConfiguration() : BALL::QSAR::ConfigIO
- readVector() : BALL::QSAR::Model
- readVector_() : BALL::DCDFile
- readXYZFile() : BALL::VIEW::MolecularFileDialog
- REAL : BALL::RegularExpression
- REAL__CHI : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- REAL__DISCRETE : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- REAL__REAL : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- real_renderer_ : BALL::VIEW::TilingRenderer
- rebuild_ : BALL::VIEW::Representation
- REBUILD_DISPLAY_LISTS : BALL::VIEW::GLRenderer, BALL::VIEW::SceneMessage
- rebuildAllRepresentations() : BALL::VIEW::RepresentationManager
- rec : BALL::IMGDock
- rec_edges_ : BALL::SmartsParser
- rec_matches_ : BALL::SmartsMatcher
- recalibrate() : BALL::Rescoring
- receive_updates_ : BALL::VIEW::RenderSetup
- received_composite_ : BALL::VIEW::ServerWidget::BALLViewServer
- receivedData() : BALL::SimpleDownloaderHelper::DLHelper
- receiveOptions() : BALL::MPISupport
- receivePersistenceStream_() : BALL::MPISupport
- receivesBufferUpdates() : BALL::VIEW::RenderSetup
- receiveSystem() : BALL::MPISupport
- Receptor() : BALL::Receptor
- receptor_ : BALL::DockingAlgorithm, BALL::ScoringFunction
- receptor_atoms_ : BALL::PB
- RECEPTOR_HYDROGENS : BALL::HydrogenBond
- recieve() : BALL::RingPerceptionProcessor::TNode_
- recieve_buffer : BALL::RingPerceptionProcessor::TNode_
- Reciprocal() : BALL::Reciprocal< Function, DataType >
- reconstructFragment() : BALL::ReconstructFragmentProcessor
- ReconstructFragmentProcessor() : BALL::ReconstructFragmentProcessor
- record_animation_action_ : BALL::VIEW::Scene
- record_fields_ : BALL::PDBFile
- record_name : BALL::PDB::RecordANISOU, BALL::PDB::RecordATOM, BALL::PDB::RecordAUTHOR, BALL::PDB::RecordCAVEAT, BALL::PDB::RecordCISPEP, BALL::PDB::RecordCOMPND, BALL::PDB::RecordCON061, BALL::PDB::RecordCON062, BALL::PDB::RecordCON063, BALL::PDB::RecordCON064, BALL::PDB::RecordCON06, BALL::PDB::RecordCONECT, BALL::PDB::RecordCRYST1, BALL::PDB::RecordDBREF, BALL::PDB::RecordEND, BALL::PDB::RecordENDMDL, BALL::PDB::RecordEXPDTA, BALL::PDB::RecordFORMUL, BALL::PDB::RecordFTNOTE, BALL::PDB::RecordHEADER, BALL::PDB::RecordHELIX, BALL::PDB::RecordHET, BALL::PDB::RecordHETATM, BALL::PDB::RecordHETNAM, BALL::PDB::RecordHETSYN, BALL::PDB::RecordHYDBND, BALL::PDB::RecordJRNL, BALL::PDB::RecordKEYWDS, BALL::PDB::RecordLINK, BALL::PDB::RecordMASTER, BALL::PDB::RecordMODEL, BALL::PDB::RecordMODRES, BALL::PDB::RecordMTRIX1, BALL::PDB::RecordMTRIX2, BALL::PDB::RecordMTRIX3, BALL::PDB::RecordOBSLTE, BALL::PDB::RecordORIGX1, BALL::PDB::RecordORIGX2, BALL::PDB::RecordORIGX3, BALL::PDB::RecordREMARK, BALL::PDB::RecordREVDAT, BALL::PDB::RecordSCALE1, BALL::PDB::RecordSCALE2, BALL::PDB::RecordSCALE3, BALL::PDB::RecordSEQADV, BALL::PDB::RecordSEQRES, BALL::PDB::RecordSHEET, BALL::PDB::RecordSIGATM, BALL::PDB::RecordSIGUIJ, BALL::PDB::RecordSITE, BALL::PDB::RecordSLTBRG, BALL::PDB::RecordSOURCE, BALL::PDB::RecordSPRSDE, BALL::PDB::RecordSSBOND, BALL::PDB::RecordTER, BALL::PDB::RecordTITLE, BALL::PDB::RecordTURN, BALL::PDB::RecordTVECT
- record_serial_number : BALL::PDB::RecordCISPEP
- record_type : BALL::PDB::RecordANISOU, BALL::PDB::RecordATOM, BALL::PDB::RecordAUTHOR, BALL::PDB::RecordCAVEAT, BALL::PDB::RecordCISPEP, BALL::PDB::RecordCOMPND, BALL::PDB::RecordCON061, BALL::PDB::RecordCON062, BALL::PDB::RecordCON063, BALL::PDB::RecordCON064, BALL::PDB::RecordCON06, BALL::PDB::RecordCONECT, BALL::PDB::RecordCRYST1, BALL::PDB::RecordDBREF, BALL::PDB::RecordEND, BALL::PDB::RecordENDMDL, BALL::PDB::RecordEXPDTA, BALL::PDB::RecordFORMUL, BALL::PDB::RecordFTNOTE, BALL::PDB::RecordHEADER, BALL::PDB::RecordHELIX, BALL::PDB::RecordHET, BALL::PDB::RecordHETATM, BALL::PDB::RecordHETNAM, BALL::PDB::RecordHETSYN, BALL::PDB::RecordHYDBND, BALL::PDB::RecordJRNL, BALL::PDB::RecordKEYWDS, BALL::PDB::RecordLINK, BALL::PDB::RecordMASTER, BALL::PDB::RecordMODEL, BALL::PDB::RecordMODRES, BALL::PDB::RecordMTRIX1, BALL::PDB::RecordMTRIX2, BALL::PDB::RecordMTRIX3, BALL::PDB::RecordOBSLTE, BALL::PDB::RecordORIGX1, BALL::PDB::RecordORIGX2, BALL::PDB::RecordORIGX3, BALL::PDB::RecordREMARK, BALL::PDB::RecordREVDAT, BALL::PDB::RecordSCALE1, BALL::PDB::RecordSCALE2, BALL::PDB::RecordSCALE3, BALL::PDB::RecordSEQADV, BALL::PDB::RecordSEQRES, BALL::PDB::RecordSHEET, BALL::PDB::RecordSIGATM, BALL::PDB::RecordSIGUIJ, BALL::PDB::RecordSITE, BALL::PDB::RecordSLTBRG, BALL::PDB::RecordSOURCE, BALL::PDB::RecordSPRSDE, BALL::PDB::RecordSSBOND, BALL::PDB::RecordTER, BALL::PDB::RecordTITLE, BALL::PDB::RecordTURN, BALL::PDB::RecordTVECT, BALL::PDB::RecordTypeFormat
- RecordHELIX() : BALL::PDB::RecordHELIX
- recording_ : BALL::VIEW::TestFramework
- RecordMASTER() : BALL::PDB::RecordMASTER
- records_ : BALL::PDBRecords
- RecordSEQRES() : BALL::PDB::RecordSEQRES
- RecordSHEET() : BALL::PDB::RecordSHEET
- RecordSSBOND() : BALL::PDB::RecordSSBOND
- RecordTURN() : BALL::PDB::RecordTURN
- RecStruct_() : BALL::SmartsMatcher::RecStruct_
- RecStructCore_() : BALL::SmartsMatcher::RecStructCore_
- RecStructPool_() : BALL::SmartsMatcher::RecStructPool_
- recurseGeneration_() : BALL::VIEW::MolecularControl
- recursive_ : BALL::SmartsParser, BALL::SmartsParser::SPNode
- RED_CHANNEL : BALL::VIEW::ChannelFormat
- redock_() : BALL::VIEW::DockResultDialog
- REDRAW : BALL::VIEW::SceneMessage
- redraw() : BALL::DockProblem, BALL::EvolutionaryDocking
- redraw_ : BALL::DockProblem
- redraw_queue_ : BALL::SDGenerator
- redrawAllRepresentations() : BALL::VIEW::MainControl
- reduced_surface_ : BALL::SolventAccessibleSurface, BALL::SolventExcludedSurface
- ReducedSurface() : BALL::ReducedSurface, BALL::RSEdge, BALL::RSFace, BALL::RSVertex
- reduceSelection_() : BALL::VIEW::MainControl
- REESTIMATE_BONDORDERS_RINGS : BALL::BuildBondsProcessor::Default, BALL::BuildBondsProcessor::Option
- reestimateBondOrdersRings_() : BALL::BuildBondsProcessor
- refArea_penalties : BALL::ScoringFunction::Result
- Reference : BALL::PDBRecords
- reference : BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ForwardIterator< Container, DataType, Position, Traits >, BALL::HashSet< Key >, BALL::NMRStarFile::NMRAtomDataSet, BALL::PDBRecords, BALL::RandomAccessIterator< Container, DataType, Position, Traits >, BALL::String, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::CompositeManager
- reference_center_ : BALL::EvolutionaryDocking
- reference_composite_ : BALL::FragmentDistanceCollector
- reference_interactions : BALL::ScoreGridSet
- reference_ligand_ : BALL::DockingAlgorithm
- reference_method : BALL::NMRStarFile::ShiftReferenceElement
- reference_neighbors_ : BALL::ScoringFunction
- REFERENCE_TEMPERATURE : BALL::MolecularDynamics::Default, BALL::MolecularDynamics::Option
- reference_temperature_ : BALL::MolecularDynamics
- reference_type : BALL::NMRStarFile::ShiftReferenceElement
- ReferenceArea() : BALL::ReferenceArea
- refine() : BALL::TriangulatedSphere
- refineClustering() : BALL::PoseClustering
- refineGuidePoints_() : BALL::VIEW::AddBackboneModel, BALL::VIEW::AddCartoonModel
- refineModelParts_() : BALL::VIEW::AddBackboneModel
- reflective_color : BALL::VIEW::Stage::Material
- reflective_intensity : BALL::VIEW::Stage::Material
- reflectivenessFactorChanged() : BALL::VIEW::MaterialSettings
- refresh() : BALL::VIEW::GLOffscreenTarget, BALL::VIEW::GLRenderWindow, BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- reg3D_grid_names_ : BALL::Rescoring3D
- register_ : BALL::VIEW::RegisterHelpSystemMessage
- registerAdvancedParameters() : BALL::CommandlineParser
- registerAt() : BALL::LogStreamNotifier
- registerChildEntry() : BALL::VIEW::PluginDialog
- registerClass() : BALL::PersistenceManager
- registerConnectionObject() : BALL::VIEW::ConnectionObject
- registerController() : BALL::VIEW::DatasetControl
- registered_at_ : BALL::LogStreamNotifier
- registered_modules_ : BALL::ShiftModel
- registered_objects_ : BALL::VIEW::PreferencesEntry
- registerFlag() : BALL::CommandlineParser
- registerForHelpSystem() : BALL::VIEW::HelpViewer, BALL::VIEW::ModularWidget
- registerHandler() : BALL::PluginManager
- RegisterHelpSystemMessage() : BALL::VIEW::RegisterHelpSystemMessage
- registerInstance_() : BALL::Embeddable
- registerKernelClasses_() : BALL::PersistenceManager
- registerMandatoryDoubleListParameter() : BALL::CommandlineParser
- registerMandatoryDoubleParameter() : BALL::CommandlineParser
- registerMandatoryGalaxyOutputFolder() : BALL::CommandlineParser
- registerMandatoryGalaxyOutputId() : BALL::CommandlineParser
- registerMandatoryInputFile() : BALL::CommandlineParser
- registerMandatoryInputFileList() : BALL::CommandlineParser
- registerMandatoryIntegerListParameter() : BALL::CommandlineParser
- registerMandatoryIntegerParameter() : BALL::CommandlineParser
- registerMandatoryOutputFile() : BALL::CommandlineParser
- registerMandatoryOutputFileList() : BALL::CommandlineParser
- registerMandatoryStringListParameter() : BALL::CommandlineParser
- registerMandatoryStringParameter() : BALL::CommandlineParser
- registerModule() : BALL::ShiftModel
- registerObject_() : BALL::VIEW::PreferencesEntry
- registerObjectCreator() : BALL::VIEW::ServerWidget
- registerOptionalDoubleListParameter() : BALL::CommandlineParser
- registerOptionalDoubleParameter() : BALL::CommandlineParser
- registerOptionalGalaxyOutputFolder() : BALL::CommandlineParser
- registerOptionalGalaxyOutputId() : BALL::CommandlineParser
- registerOptionalInputFile() : BALL::CommandlineParser
- registerOptionalInputFileList() : BALL::CommandlineParser
- registerOptionalIntegerListParameter() : BALL::CommandlineParser
- registerOptionalIntegerParameter() : BALL::CommandlineParser
- registerOptionalOutputFile() : BALL::CommandlineParser
- registerOptionalOutputFileList() : BALL::CommandlineParser
- registerOptionalStringListParameter() : BALL::CommandlineParser
- registerOptionalStringParameter() : BALL::CommandlineParser
- registerParameter() : BALL::GeneticAlgorithm
- registerPredicate() : BALL::Expression
- registerRenderers_() : BALL::VIEW::Scene
- registerShortcut() : BALL::VIEW::ShortcutRegistry
- registerStandardModules_() : BALL::ShiftModel
- registerStandardPredicates_() : BALL::Expression
- registerThis() : BALL::Embeddable
- registerTransformation() : BALL::File, BALL::TransformationManager
- registerTypes_() : BALL::MPISupport
- registerWidget() : BALL::VIEW::ModularWidget
- registerWidgetForHelpSystem_() : BALL::VIEW::PreferencesEntry
- registerWidgets_() : BALL::VIEW::PreferencesEntry
- Registry() : BALL::QSAR::Registry, BALL::QSAR::RegistryEntry
- RegistryEntry : BALL::QSAR::Registry, BALL::QSAR::RegistryEntry
- regression : BALL::QSAR::RegistryEntry
- RegressionModel() : BALL::QSAR::RegressionModel
- RegressionValidation : BALL::QSAR::KernelModel, BALL::QSAR::LatentVariableModel, BALL::QSAR::Model, BALL::QSAR::QSARData, BALL::QSAR::RegressionModel, BALL::QSAR::RegressionValidation
- RegularData3DController() : BALL::VIEW::RegularData3DController
- RegularExpression() : BALL::RegularExpression
- rehash() : BALL::HashSet< Key >
- ReissCavFreeEnergyProcessor() : BALL::ReissCavFreeEnergyProcessor
- reject() : BALL::VIEW::AmberConfigurationDialog, BALL::VIEW::AssignBondOrderConfigurationDialog, BALL::VIEW::CharmmConfigurationDialog, BALL::VIEW::EditSingleShortcut, BALL::VIEW::GeometricFitDialog, BALL::VIEW::MMFF94ConfigurationDialog, BALL::VIEW::Preferences, BALL::VIEW::RaytraceableContourSurfaceDialog
- related_database_entries : BALL::NMRStarFile::MolecularSystem
- RelatedDB() : BALL::NMRStarFile::MolecularSystem::RelatedDB
- relation_type : BALL::NMRStarFile::MolecularSystem::RelatedDB
- relative_ : BALL::VIEW::LightSource
- RELEASE_DATE_AND_TIME : BALL::VersionInfo
- RELEASE_WHAT_STRING : BALL::VersionInfo
- releaseBuffer() : BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- RelHydrophobicVdWSurface() : BALL::RelHydrophobicVdWSurface
- RelNegativePartialCharge() : BALL::RelNegativePartialCharge
- RelNegativePolarVdWSurface() : BALL::RelNegativePolarVdWSurface
- RelNegativeVdWSurface() : BALL::RelNegativeVdWSurface
- RelNumberOfRotatableBonds() : BALL::RelNumberOfRotatableBonds
- RelNumberOfRotatableSingleBonds() : BALL::RelNumberOfRotatableSingleBonds
- RelPolarVdWSurface() : BALL::RelPolarVdWSurface
- RelPositivePartialCharge() : BALL::RelPositivePartialCharge
- RelPositivePolarVdWSurface() : BALL::RelPositivePolarVdWSurface
- RelPositiveVdWSurface() : BALL::RelPositiveVdWSurface
- remark_number : BALL::PDB::RecordREMARK
- remark_records : BALL::PDB::BookKeeping
- remember() : BALL::FPTBondOrderStrategy::DPBackTracking_
- REMOTENESS_INDICATOR__ALPHA : BALL::PDBAtom
- REMOTENESS_INDICATOR__alpha : BALL::PDBAtom
- REMOTENESS_INDICATOR__BETA : BALL::PDBAtom
- REMOTENESS_INDICATOR__beta : BALL::PDBAtom
- REMOTENESS_INDICATOR__DELTA : BALL::PDBAtom
- REMOTENESS_INDICATOR__delta : BALL::PDBAtom
- REMOTENESS_INDICATOR__EPSILON : BALL::PDBAtom
- REMOTENESS_INDICATOR__epsilon : BALL::PDBAtom
- REMOTENESS_INDICATOR__ETA : BALL::PDBAtom
- REMOTENESS_INDICATOR__eta : BALL::PDBAtom
- REMOTENESS_INDICATOR__GAMMA : BALL::PDBAtom
- REMOTENESS_INDICATOR__gamma : BALL::PDBAtom
- REMOTENESS_INDICATOR__UNKNOWN : BALL::PDBAtom
- REMOTENESS_INDICATOR__ZETA : BALL::PDBAtom
- REMOTENESS_INDICATOR__zeta : BALL::PDBAtom
- RemotenessIndicator : BALL::PDBAtom
- REMOVE : BALL::VIEW::DatasetMessage, BALL::VIEW::RepresentationMessage
- remove() : BALL::AtomContainer, BALL::Chain, BALL::Directory, BALL::File, BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::List< Value >, BALL::LogStream, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Protein, BALL::Residue, BALL::RSFace, BALL::SecondaryStructure, BALL::StringHashMap< Value >, BALL::System, BALL::Triangle, BALL::TriangulatedSurface, BALL::VIEW::CompositeManager, BALL::VIEW::MainControl, BALL::VIEW::RepresentationManager
- remove_() : BALL::VIEW::MainControl
- REMOVE_COORDINATE_SYSTEM : BALL::VIEW::SceneMessage
- remove_correlated : BALL::QSAR::FeatureSelectionConfiguration
- removeAll() : BALL::HashGridBox3< Item >
- removeChild() : BALL::Composite, BALL::ConnectedToPredicate::CTPNode, BALL::ResourceEntry
- removeClippingPlane() : BALL::VIEW::RepresentationManager
- removeComponent() : BALL::ComposedEnergyProcessor, BALL::ForceField, BALL::ScoringFunction
- removeComposite() : BALL::VIEW::MolecularControl
- REMOVED_COMPOSITE : BALL::VIEW::CompositeMessage
- removedComposite() : BALL::VIEW::RepresentationManager
- removeDirectory() : BALL::VIEW::PluginDirectoryModel
- removeEmptyDescriptors() : BALL::QSAR::FeatureSelection
- removeEntry() : BALL::VIEW::Preferences
- removeFile_() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- removeGrid_() : BALL::VIEW::ModifyRepresentationDialog
- removeGridTextures() : BALL::VIEW::RenderSetup
- removeHavingProperty() : BALL::AtomContainer
- removeHighlyCorrelatedCompounds() : BALL::QSAR::QSARData
- removeHighlyCorrelatedFeatures() : BALL::QSAR::FeatureSelection
- removeHotkey() : BALL::VIEW::PyWidget
- removeInvalidDescriptors() : BALL::QSAR::QSARData
- removeInvalidSubstances() : BALL::QSAR::QSARData
- removeItem_() : BALL::VIEW::GenericControl, BALL::VIEW::Preferences
- removeKey() : BALL::ResourceEntry, BALL::ResourceFile
- removeLightPressed() : BALL::VIEW::LightSettings
- removeLightSource() : BALL::VIEW::Stage
- removeLowResponseCorrelation() : BALL::QSAR::FeatureSelection
- removeMenuEntry() : BALL::VIEW::MainControl
- removeModularWidget() : BALL::VIEW::MainControl
- removeMoleculeOwnership() : BALL::FlexibleMolecule
- removeNotHavingProperty() : BALL::AtomContainer
- removePluginDirectory() : BALL::PluginManager, BALL::VIEW::PluginDialog
- removeRecursive_() : BALL::VIEW::MolecularControl
- removeRepresentation() : BALL::VIEW::GeometricControl, BALL::VIEW::GLRenderer, BALL::VIEW::Renderer, BALL::VIEW::RenderSetup, BALL::VIEW::RTfactRenderer, BALL::VIEW::TilingRenderer
- removeSelected() : BALL::Composite
- removeSelection() : BALL::VIEW::HotkeyTable
- removeSolvent() : BALL::PeriodicBoundary
- removeTextureFor_() : BALL::VIEW::GLRenderer
- removeUnselected() : BALL::Composite
- rename() : BALL::Directory, BALL::File, BALL::VIEW::SnapshotManagerInterface
- renameRepresentation() : BALL::VIEW::GeometricControl
- renameTo() : BALL::Directory, BALL::File
- rend() : BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::Gradient, BALL::PDBRecords, BALL::RandomAccessIterator< Container, DataType, Position, Traits >, BALL::String
- rendBond() : BALL::Atom
- rendChildComposite() : BALL::Composite
- rendComposite() : BALL::Composite
- render() : BALL::VIEW::GLRenderer
- render_() : BALL::VIEW::Renderer, BALL::VIEW::TilingRenderer
- render_mode_ : BALL::VIEW::GLRenderer
- RENDER_MODE_ALWAYS_FRONT : BALL::VIEW::GLRenderer
- RENDER_MODE_SOLID : BALL::VIEW::GLRenderer
- RENDER_MODE_TRANSPARENT : BALL::VIEW::GLRenderer
- RENDER_MODE_UNDEFINED : BALL::VIEW::GLRenderer
- render_mutex_ : BALL::VIEW::RenderSetup
- render_timer_ : BALL::VIEW::MainControl
- renderBox_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderClippingPlane_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderDashedBond_() : BALL::VIEW::AddBallAndStickModel
- renderDisc_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::XML3DRenderer
- Renderer() : BALL::VIEW::Renderer
- renderer : BALL::VIEW::RenderSetup
- renderer_ : BALL::VIEW::RenderToBufferFinishedEvent
- renderer_type_ : BALL::VIEW::RenderSetup
- renderers_ : BALL::VIEW::Scene
- RendererType : BALL::VIEW::RenderSetup
- renderGrid_() : BALL::VIEW::Scene
- renderGridVisualisation_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- rendering_paused_ : BALL::VIEW::RenderSetup
- renderLabel_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::XML3DRenderer
- renderLine_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderMesh_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- RenderMode : BALL::VIEW::GLRenderer
- renderMultiLine_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::XML3DRenderer
- renderMultipleBond_() : BALL::VIEW::AddBallAndStickModel
- renderNucleotideOutline_() : BALL::VIEW::AddCartoonModel
- renderOneRepresentation() : BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::TilingRenderer, BALL::VIEW::XML3DRenderer
- renderPoint_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::XML3DRenderer
- renderQuadMesh_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderRepresentation_() : BALL::VIEW::GLRenderer
- renderRepresentations_() : BALL::VIEW::GLRenderer
- renderRuler() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer, BALL::VIEW::TilingRenderer
- renderSD_() : BALL::VIEW::SDWidget
- RenderSetup() : BALL::VIEW::RenderSetup, BALL::VIEW::Scene
- renderSimpleBox_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderSphere_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderStandardBond_() : BALL::VIEW::AddBallAndStickModel
- renderText() : BALL::VIEW::GLRenderWindow
- renderText_() : BALL::VIEW::Scene
- renderToBuffer() : BALL::VIEW::BufferedRenderer, BALL::VIEW::GLRenderer, BALL::VIEW::RenderSetup, BALL::VIEW::TilingRenderer
- renderToBuffer_() : BALL::VIEW::RenderSetup
- RenderToBufferFinishedEvent() : BALL::VIEW::RenderToBufferFinishedEvent
- renderToBufferImpl() : BALL::VIEW::BufferedRenderer, BALL::VIEW::CudaVolumeRenderer, BALL::VIEW::RTfactRenderer
- renderTube_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderTwoColoredLine_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderTwoColoredTube_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- reopen() : BALL::File
- rep_ : BALL::VIEW::DisplayProperties, BALL::VIEW::ModifyRepresentationDialog, BALL::VIEW::UpdateRepresentationThread
- rep_label_ : BALL::VIEW::MainControl
- rep_label_delta_ : BALL::VIEW::MainControl
- rep_label_nr_ : BALL::VIEW::MainControl
- rep_to_buffers_ : BALL::VIEW::GLRenderer
- replace() : BALL::Composite, BALL::String
- replaceGridSetFromFile() : BALL::GridBasedScoring
- replacing_entry_code : BALL::PDB::RecordOBSLTE
- reply_ : BALL::SimpleDownloaderHelper::BasicHelper
- Representation() : BALL::VIEW::Representation, BALL::VIEW::RepresentationManager
- representation_ : BALL::RadialDistributionFunction
- representation_to_item_ : BALL::VIEW::GeometricControl
- RepresentationManager : BALL::VIEW::MainControl, BALL::VIEW::Representation, BALL::VIEW::RepresentationManager
- RepresentationMessage() : BALL::VIEW::RepresentationMessage
- RepresentationMessageType : BALL::VIEW::RepresentationMessage
- representations_ : BALL::VIEW::POVRenderer, BALL::VIEW::RepresentationManager, BALL::VIEW::XML3DRenderer
- RepresentationsConstIterator : BALL::VIEW::RepresentationManager
- RepresentationSet : BALL::VIEW::RepresentationManager
- RepresentationsIterator : BALL::VIEW::RepresentationManager
- reps : BALL::VIEW::ExportGeometryDialog
- reps_ : BALL::VIEW::ClippingPlane
- requestModeChange() : BALL::VIEW::InteractionMode
- res : BALL::HBondProcessor::ResidueData
- rescale() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- rescore() : BALL::Rescoring
- Rescoring : BALL::QSAR::RegressionModel, BALL::Rescoring::RescoreQSARData, BALL::Rescoring
- Rescoring1D() : BALL::Rescoring1D
- Rescoring3D() : BALL::Rescoring3D, BALL::Rescoring::RescoreQSARData
- Rescoring4D() : BALL::Rescoring4D
- reserve() : BALL::String
- reset() : BALL::DockingAlgorithm, BALL::Path, BALL::Timer, BALL::VIEW::DockDialog, BALL::VIEW::EditSingleShortcut, BALL::VIEW::GeometricFitDialog, BALL::VIEW::PropEditorWidget, BALL::VIEW::PropertyEditor
- reset_() : BALL::VIEW::BoolEditorWidget, BALL::VIEW::DoubleEditorWidget, BALL::VIEW::FloatEditorWidget, BALL::VIEW::IntEditorWidget, BALL::VIEW::PDBInfoEditorWidget, BALL::VIEW::PropDeleteWidget, BALL::VIEW::PropEditorWidget, BALL::VIEW::StringEditorWidget, BALL::VIEW::UIntEditorWidget
- resetBondOrders() : BALL::AssignBondOrderProcessor
- resetCamera_() : BALL::VIEW::Scene
- resetCounter() : BALL::TContour< T >, BALL::TContourLine< T >
- resetFlexibleResidues() : BALL::ScoringFunction
- resetHTMLView() : BALL::VIEW::HTMLViewDock
- resetLanguageChanged() : BALL::VIEW::MainControlPreferences
- resetOptions() : BALL::VIEW::AmberConfigurationDialog, BALL::VIEW::AssignBondOrderConfigurationDialog, BALL::VIEW::CharmmConfigurationDialog, BALL::VIEW::MMFF94ConfigurationDialog
- resetPositions() : BALL::AtomVector
- resetPredicate() : BALL::AtomContainerIteratorTraits, BALL::AtomIteratorTraits, BALL::ChainIteratorTraits, BALL::FragmentIteratorTraits, BALL::MoleculeIteratorTraits, BALL::NucleicAcidIteratorTraits, BALL::NucleotideIteratorTraits, BALL::PDBAtomIteratorTraits, BALL::ProteinIteratorTraits, BALL::ResidueIteratorTraits, BALL::SecondaryStructureIteratorTraits
- resetPressed() : BALL::VIEW::DockDialog, BALL::VIEW::FDPBDialog
- resetRepresentationsForRenderer_() : BALL::VIEW::Scene
- resetResiduePositions() : BALL::ScoringFunction
- resetScoring() : BALL::ConformationSet
- resetTo_pressed() : BALL::VIEW::UndoManagerDialog
- resetTracking() : BALL::VIEW::Scene
- Residue() : BALL::PDB::Residue, BALL::Residue
- residue : BALL::PDB::RecordANISOU, BALL::PDB::RecordATOM, BALL::PDB::RecordCISPEP, BALL::PDB::RecordHET, BALL::PDB::RecordHETATM, BALL::PDB::RecordHYDBND::HydrogenAtom, BALL::PDB::RecordHYDBND::HydrogenPartnerAtom, BALL::PDB::RecordLINK::LinkPartner, BALL::PDB::RecordMODRES, BALL::PDB::RecordSEQADV, BALL::PDB::RecordSIGATM, BALL::PDB::RecordSIGUIJ, BALL::PDB::RecordSITE, BALL::PDB::RecordSLTBRG::PartnerAtom, BALL::PDB::RecordTER, BALL::PDB::Structure::AtomEntry
- residue_data_ : BALL::HBondProcessor
- residue_id : BALL::PDB::AdditionalAtomInfo
- residue_in_current_strand : BALL::PDB::RecordSHEET
- residue_in_previous_strand : BALL::PDB::RecordSHEET
- residue_insertion_code : BALL::PDB::AdditionalAtomInfo
- residue_label : BALL::NMRStarFile::NMRAtomData
- residue_map_ : BALL::PDBFile, BALL::VIEW::ResidueNumberColorProcessor
- residue_name : BALL::PDB::AdditionalAtomInfo, BALL::PDB::RecordSEQRES, BALL::ResidueTorsions::Data
- residue_name_ : BALL::PDBFile
- residue_ptr_to_position_ : BALL::HBondProcessor
- residue_seq_code : BALL::NMRStarFile::NMRAtomData
- residue_sequence : BALL::NMRStarFile::MonomericPolymer
- residue_sequence_number_ : BALL::PDBFile
- ResidueChecker() : BALL::ResidueChecker
- ResidueIteratorTraits() : BALL::ResidueIteratorTraits
- ResidueMap : BALL::PDBFile
- ResidueNameColorProcessor() : BALL::VIEW::ResidueNameColorProcessor
- ResidueNumberColorProcessor() : BALL::VIEW::ResidueNumberColorProcessor
- ResidueQuadruple : BALL::PDBFile
- ResidueRotamerSet() : BALL::ResidueRotamerSet
- residues : BALL::VIEW::AddBackboneModel::ModelPart
- residues_by_index : BALL::NMRStarFile::MonomericPolymer
- residues_to_be_rendered_ : BALL::VIEW::AddBackboneModel
- residues_with_rings_ : BALL::JohnsonBoveyShiftProcessor
- residuesAreConnected_() : BALL::VIEW::AddBackboneModel
- ResidueTorsions() : BALL::ResidueTorsions
- ResidueTypeColorProcessor() : BALL::VIEW::ResidueTypeColorProcessor
- resize() : BALL::AtomVector, BALL::PDBRecords, BALL::String, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::FrameBufferFormat, BALL::VIEW::GLOffscreenTarget, BALL::VIEW::GLRenderWindow, BALL::VIEW::MainControl, BALL::VIEW::RenderSetup, BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- resize_to_parent_ : BALL::VIEW::SDWidget
- resized() : BALL::VIEW::FrameBufferFormat
- resizeEvent() : BALL::VIEW::Scene, BALL::VIEW::TextEditorWidget
- resizeGrid() : BALL::VIEW::RegularData3DController
- resizeNormals() : BALL::TSurface< T >
- resizeTriangles() : BALL::TSurface< T >
- resizeVertices() : BALL::TSurface< T >
- Resolution() : BALL::VIEW::Resolution
- resolution_ : BALL::GridAnalysis, BALL::Rescoring3D, BALL::ScoringFunction
- resolvePseudoAtoms() : BALL::Peptides::NameConverter
- ResourceEntry() : BALL::ResourceEntry
- ResourceFile() : BALL::ResourceFile
- restart_ : BALL::TCPServer
- restart_frequency_ : BALL::ConjugateGradientMinimizer
- restore() : BALL::DockProblem
- restoreDefaultValues() : BALL::VIEW::LightSettings, BALL::VIEW::OpenSavePreferences, BALL::VIEW::PluginDialog, BALL::VIEW::PreferencesEntry
- restoreItem_() : BALL::VIEW::AtomOverview
- restoreRepresentations() : BALL::VIEW::RepresentationManager
- restoreValues() : BALL::VIEW::LightSettings, BALL::VIEW::OpenSavePreferences, BALL::VIEW::PreferencesEntry
- restoreValues_() : BALL::VIEW::PreferencesEntry
- restoreViewPoint() : BALL::VIEW::Scene
- restoreWindows() : BALL::VIEW::MainControl
- Result : BALL::Processor, BALL::Result, BALL::RMSDMinimizer
- result_ : BALL::RombergIntegrator< Function, DataType >, BALL::ScoringFunction, BALL::SimpleDownloaderHelper::HelperThread
- result_data_ : BALL::Result
- result_output_data_ : BALL::Result
- result_type : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >, BALL::UnaryFunctor< ArgumentType, ResultType >
- ResultData() : BALL::Result::ResultData
- results : BALL::FDPB
- results_ : BALL::VIEW::PyWidget
- retrieveHistoryLine_() : BALL::VIEW::PyWidget
- retrieveSymOps_() : BALL::CrystalInfo
- return_stack_ : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- returnPressed() : BALL::VIEW::PyWidget
- reverse() : BALL::String
- reverse_iterator : BALL::PDBRecords, BALL::String
- ReverseIterator : BALL::Gradient, BALL::PDBRecords
- revert() : BALL::GraphEdge< Vertex, Edge, Face >
- rewind() : BALL::LineBasedFile
- Rf : BALL::Element
- rfind() : BALL::String
- RGB_24 : BALL::VIEW::PixelFormat
- RGB_32 : BALL::VIEW::PixelFormat
- RGB_3_2_2 : BALL::VIEW::PixelFormat
- RGBA_32 : BALL::VIEW::PixelFormat
- RGBF_96 : BALL::VIEW::PixelFormat
- RGroupAssembler() : BALL::RGroupAssembler
- Rh : BALL::Element
- RHENIUM : BALL::Element
- rho_ : BALL::StrangLBFGSMinimizer
- RHO_0 : BALL::GeneralizedBornModel::Default, BALL::GeneralizedBornModel::Option
- RHODIUM : BALL::Element
- RIBBON : BALL::VIEW::AddBackboneModel
- ribbon_height_ : BALL::VIEW::AddBackboneModel
- ribbon_mode_ : BALL::VIEW::AddBackboneModel
- ribbon_radius_ : BALL::VIEW::AddCartoonModel
- ribbon_width_ : BALL::VIEW::AddBackboneModel, BALL::VIEW::AddCartoonModel
- ribbonModeEnabled() : BALL::VIEW::AddBackboneModel
- ribbonsEnabled() : BALL::VIEW::AddCartoonModel
- right() : BALL::String
- right_ : BALL::VIEW::GLRenderer
- RIGHT_EYE : BALL::VIEW::RenderSetup
- RIGHT_EYE_WINDOW : BALL::VIEW::Scene
- right_vector_ : BALL::TBox3< T >, BALL::VIEW::Camera
- Rigid() : BALL::FlexDefinition
- RigidTransformation() : BALL::PoseClustering::RigidTransformation
- rij : BALL::MMFF94NonBonded::NonBondedPairData
- rij_ : BALL::MMFF94VDWParameters
- rij_7 : BALL::MMFF94NonBonded::NonBondedPairData
- rij_7_ : BALL::MMFF94VDWParameters
- Ring() : BALL::RingAnalyser::Ring
- ring_analyser_ : BALL::SDGenerator
- ring_atoms_ : BALL::HaighMallionShiftProcessor, BALL::VIEW::AtomBondModelBaseProcessor
- RING_CONNECTED : BALL::SmartsParser::SPAtom
- ring_connections_ : BALL::SmartsParser
- ring_proc_ : BALL::SMARTSPredicate
- ring_systems_ : BALL::RingAnalyser
- RingAnalyser() : BALL::RingAnalyser
- RingFinder() : BALL::RingFinder
- ringIsClockwise_() : BALL::SDGenerator
- RingPerceptionProcessor() : BALL::RingPerceptionProcessor
- RingProcessorException() : BALL::Exception::RingProcessorException
- rings_ : BALL::AtomTyper, BALL::JohnsonBoveyShiftProcessor, BALL::Kekuliser, BALL::MMFF94, BALL::RingAnalyser, BALL::RingPerceptionProcessor, BALL::VIEW::AtomBondModelBaseProcessor
- rings_per_bond_ : BALL::RingAnalyser
- RingType : BALL::RingAnalyser
- rl_thread_ : BALL::VIEW::MolecularControl
- rm_vertices_ : BALL::RSComputer
- rms : BALL::Gradient
- RMS_CRITERION : BALL::FDPB::Default, BALL::FDPB::Option
- rmsd_ : BALL::StructureMapper
- RMSD_LEVEL_OF_DETAIL : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- rmsd_level_of_detail_ : BALL::PoseClustering
- RMSD_TYPE : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- Rn : BALL::Element
- rng_ : BALL::GeneticAlgorithm
- RombergIntegrator() : BALL::RombergIntegrator< Function, DataType >
- root : BALL::GAFFCESParser
- root_ : BALL::SmartsParser, BALL::TreeWidthImplementation< UndirectedGraph >::TreeDecompositionBuilder< OriginalGraphType >, BALL::VIEW::AssignBondOrderResultsDialog
- root_atom : BALL::MOL2File::SubstructureStruct
- ROOT_BAG : BALL::TreeWidth< UndirectedGraph >
- root_predicate : BALL::GAFFCESParser
- Rotamer() : BALL::Rotamer
- rotamer_library_ : BALL::VIEW::MolecularControl
- rotamer_library_mutex_ : BALL::VIEW::MolecularControl
- rotamer_mapper_ : BALL::VIEW::MolecularControl
- rotamer_menu_ : BALL::VIEW::MolecularControl
- RotamerLibrary : BALL::FlexDefinition, BALL::RotamerLibrary
- rotamers_ : BALL::ResidueRotamerSet
- rotatable_ligand_bonds_ : BALL::ScoringFunction
- rotate() : BALL::RotateBond, BALL::RotateBonds, BALL::TMatrix4x4< T >, BALL::VIEW::Camera, BALL::VIEW::Scene
- rotateAboutView() : BALL::VIEW::Camera
- RotateBond() : BALL::RotateBond
- RotateBonds() : BALL::RotateBonds
- rotateClockwise() : BALL::VIEW::Scene
- rotateComposites() : BALL::VIEW::Scene
- rotateLigandFragment() : BALL::IMGDock
- RotateMode() : BALL::VIEW::RotateMode
- rotateProbeGroup_() : BALL::GridAnalysis
- rotateSystem_() : BALL::VIEW::RotateMode
- rotateSystemClockwise_() : BALL::VIEW::RotateMode, BALL::VIEW::Scene
- rotateVector3Angle_() : BALL::VIEW::GLRenderer
- rotateX() : BALL::TMatrix4x4< T >
- rotateY() : BALL::TMatrix4x4< T >
- rotateZ() : BALL::TMatrix4x4< T >
- rotation : BALL::PoseClustering::RigidTransformation
- rotation_ : BALL::VIEW::POVRenderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- RotationalEntropy() : BALL::RotationalEntropy
- RotationAngles_() : BALL::GeometricFit::RotationAngles_
- row_ : BALL::VIEW::AtomOverview::ApplyProcessor
- row_axis_ : BALL::CCP4File
- rowCount() : BALL::VIEW::PluginDirectoryModel, BALL::VIEW::PluginModel, BALL::VIEW::ShortcutTableModel
- rowSelected() : BALL::VIEW::PythonSettings
- RRModel() : BALL::QSAR::RRModel
- rs_ : BALL::MMFF94VDWParameters, BALL::RSComputer
- RSComputer : BALL::ReducedSurface, BALL::RSComputer, BALL::RSEdge, BALL::RSFace, BALL::RSVertex
- RSEdge() : BALL::RSEdge, BALL::RSFace, BALL::RSVertex
- rsedge_ : BALL::SESEdge, BALL::SESFace
- RSFace : BALL::RSEdge, BALL::RSFace, BALL::RSVertex
- rsface_ : BALL::SESFace
- RSVertex : BALL::RSEdge, BALL::RSFace, BALL::RSVertex
- rsvertex_ : BALL::SESFace
- rt_contour_surface_dialog_ : BALL::VIEW::RaytraceableGridController
- rt_material_ : BALL::VIEW::XML3DRenderer
- RTFACT_RENDERER : BALL::VIEW::RenderSetup
- RTfactRenderer() : BALL::VIEW::RTfactRenderer
- Ru : BALL::Element
- RUBIDIUM : BALL::Element
- rule_map_ : BALL::RuleEvaluator
- rule_times : BALL::AtomTyper
- rule_types_ : BALL::MMFF94ChargeProcessor
- RuleEvaluator() : BALL::RuleEvaluator
- RuleList : BALL::RuleEvaluator
- RuleMap : BALL::RuleEvaluator
- RuleProcessor() : BALL::RuleProcessor
- rules_ : BALL::AtomTyper
- run() : BALL::PyCAPIKernel, BALL::PyInterpreter, BALL::PyKernel, BALL::RSComputer, BALL::SASTriangulator, BALL::SESComputer, BALL::SESSingularityCleaner, BALL::SESTriangulator, BALL::SimpleDownloaderHelper::HelperThread, BALL::TCPServerThread, BALL::VIEW::AnimationThread, BALL::VIEW::BALLThread, BALL::VIEW::CalculateFDPBThread, BALL::VIEW::DockingThread, BALL::VIEW::EnergyMinimizerThread, BALL::VIEW::GenerateCrystalThread, BALL::VIEW::MDSimulationThread, BALL::VIEW::RenderSetup, BALL::VIEW::RunPythonThread, BALL::VIEW::ServerWidget::BALLViewServer, BALL::VIEW::UpdateRepresentationThread
- RUN_PARALLEL : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- run_test : BALL::VIEW::TestFramework
- runBondOrderAssignment() : BALL::VIEW::MolecularStructure
- runCommand_() : BALL::VIEW::PyWidget
- runCurrentScript() : BALL::VIEW::PyWidget
- runDocking() : BALL::VIEW::DockingController
- runFile() : BALL::PyCAPIKernel, BALL::PyInterpreter, BALL::PyKernel
- runMinimization() : BALL::VIEW::MolecularStructure
- running_ : BALL::VIEW::PyWidget
- running_plugins_ : BALL::PluginHandler
- runningOnVirtualBox() : BALL::VIEW::GLRenderer
- RunPythonThread() : BALL::VIEW::RunPythonThread
- runRescoring() : BALL::Rescorer
- runScoring_() : BALL::VIEW::DockingController
- runString() : BALL::VIEW::PyWidget
- runTest() : BALL::VIEW::TestFramework
- runtime_ : BALL::VIEW::TestFramework
- RUTHENIUM : BALL::Element
- RUTHERFORDIUM : BALL::Element