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BALL::KCFFile Member List

This is the complete list of members for BALL::KCFFile, including all inherited members.

AtomIndexMap typedef | BALL::KCFFile |
clear() | BALL::LineBasedFile | virtual
close() | BALL::GenericMolFile | virtual
col_buffer_ | BALL::LineBasedFile | protected
compress_output_ | BALL::GenericMolFile | protected
CONTINUED_LINE | BALL::KCFFile | static
copy(String source_name, String destination_name, Size buffer_size=4096) | BALL::File | static
copyTo(const String &destination_name, Size buffer_size=4096) | BALL::File |
created_temp_filenames_ | BALL::File | protected static
createTemporaryFilename(String &temporary, const String &suffix=".TMP") | BALL::File | static
defineInputAsTemporary(bool b=true) | BALL::GenericMolFile |
DELIMITER_TAG | BALL::KCFFile | static
disableTransformation(Transformation transformation) | BALL::File | static
EDGE_TAG | BALL::KCFFile | static
enableOutputCompression(String zipped_filename) | BALL::GenericMolFile |
enableTransformation(Transformation transformation) | BALL::File | static
enableTrimWhitespaces(bool state) | BALL::LineBasedFile |
ENTRY_TAG | BALL::KCFFile | static
File() | BALL::File |
File(const String &name, OpenMode open_mode=std::ios::in) | BALL::File |
GenericMolFile() | BALL::GenericMolFile |
GenericMolFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::GenericMolFile |
getField(Index pos=0, const String &quotes="", const String &delimiters=String::CHARACTER_CLASS__WHITESPACE) const | BALL::LineBasedFile |
getFileStream() | BALL::File |
getLine() const | BALL::LineBasedFile |
getLine() | BALL::LineBasedFile |
getLineNumber() const | BALL::LineBasedFile |
getName() const | BALL::File |
getOpenMode() const | BALL::File |
getOriginalName() const | BALL::File |
getSize() | BALL::File |
getSize(String name) | BALL::File | static
getTransformationManager() | BALL::File |
getTransformationManager() const | BALL::File |
getType(String name, bool trace_link) | BALL::File | static
getType(bool trace_link) const | BALL::File |
gmf_is_closed_ | BALL::GenericMolFile | protected
gotoLine(Position line_number) | BALL::LineBasedFile |
has(const String &text) const | BALL::LineBasedFile |
IndexAtomMap typedef | BALL::KCFFile |
initRead_() | BALL::GenericMolFile | protected virtual
initWrite_() | BALL::GenericMolFile | protected virtual
input_is_temporary_ | BALL::GenericMolFile | protected
is_open_ | BALL::File | protected
is_temporary_ | BALL::File | protected
isAccessible(String name) | BALL::File | static
isAccessible() const | BALL::File |
isCanonized() const | BALL::File |
isClosed() const | BALL::File |
isCompressedFile() | BALL::GenericMolFile |
isExecutable(String name) | BALL::File | static
isExecutable() const | BALL::File |
isOpen() const | BALL::File |
isReadable(String name) | BALL::File | static
isReadable() const | BALL::File |
isTransformationEnabled(Transformation transformation) | BALL::File | static
isValid() const | BALL::File |
isWritable(String name) | BALL::File | static
isWritable() const | BALL::File |
KCFFile() | BALL::KCFFile |
KCFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::KCFFile |
line_ | BALL::LineBasedFile | protected
line_number_ | BALL::LineBasedFile | protected
LineBasedFile() | BALL::LineBasedFile |
LineBasedFile(const String &filename, File::OpenMode open_mode=std::ios::in, bool trim_whitespaces=false) | BALL::LineBasedFile |
MODE_APP | BALL::File | static
MODE_ATE | BALL::File | static
MODE_BINARY | BALL::File | static
MODE_IN | BALL::File | static
MODE_OUT | BALL::File | static
MODE_TRUNC | BALL::File | static
move(const String &source_name, const String &destination_name) | BALL::File | static
moveTo(const String &destination_name) | BALL::File |
name_ | BALL::File | protected
NODE_TAG | BALL::KCFFile | static
open(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::File |
open_mode_ | BALL::File | protected
OpenMode typedef | BALL::File |
operator!=(const LineBasedFile &f) | BALL::LineBasedFile |
BALL::File::operator!=(const File &file) const | BALL::File |
operator<<(const System &system) | BALL::GenericMolFile | virtual
operator<<(const Molecule &molecule) | BALL::GenericMolFile | virtual
operator=(const KCFFile &file) | BALL::KCFFile |
BALL::GenericMolFile::operator=(const GenericMolFile &rhs) | BALL::GenericMolFile |
BALL::LineBasedFile::operator=(const LineBasedFile &file) | BALL::LineBasedFile |
operator==(const LineBasedFile &f) | BALL::LineBasedFile |
BALL::File::operator==(const File &file) const | BALL::File |
operator>>(System &system) | BALL::GenericMolFile | virtual
operator>>(Molecule &molecule) | BALL::GenericMolFile | virtual
original_name_ | BALL::File | protected
parseColumnFormat(const char *format, Position index, Size length, void *arg) | BALL::LineBasedFile |
read(System &system) | BALL::KCFFile | virtual
read() | BALL::KCFFile | virtual
readDELIMITER_() | BALL::KCFFile | protected
readEDGE_(IndexAtomMap &index_to_atom) | BALL::KCFFile | protected
readENTRY_(Molecule &mol) | BALL::KCFFile | protected
readLine() | BALL::LineBasedFile |
readNODE_(Molecule &mol, IndexAtomMap &index_to_atom) | BALL::KCFFile | protected
registerTransformation(const String &pattern, const String &exec) | BALL::File | static
remove(String name) | BALL::File | static
remove() | BALL::File |
rename(String old_path, String new_path) | BALL::File | static
renameTo(const String &new_path) | BALL::File |
reopen() | BALL::File |
reopen(File::OpenMode open_mode) | BALL::File |
rewind() | BALL::LineBasedFile |
search(const String &text, bool return_to_start=false) | BALL::LineBasedFile |
search(const String &text, const String &stop, bool return_to_start=false) | BALL::LineBasedFile |
setName(const String &name) | BALL::File |
skipLines(Size number=1) | BALL::LineBasedFile |
startsWith(const String &text) const | BALL::LineBasedFile |
switchString(const std::vector< String > &data) const | BALL::LineBasedFile |
test(const char *file, int line, bool condition, const String &msg) const | BALL::LineBasedFile |
Transformation enum name | BALL::File |
TRANSFORMATION__EXEC enum value | BALL::File |
TRANSFORMATION__FILTER enum value | BALL::File |
TRANSFORMATION__URL enum value | BALL::File |
TRANSFORMATION_EXEC_PREFIX | BALL::File | static
TRANSFORMATION_FILE_PREFIX | BALL::File | static
TRANSFORMATION_FTP_PREFIX | BALL::File | static
TRANSFORMATION_HTTP_PREFIX | BALL::File | static
transformation_manager_ | BALL::File | protected static
transformation_methods_ | BALL::File | protected static
trim_whitespaces_ | BALL::LineBasedFile | protected
trimWhiteSpacesEnabled() const | BALL::LineBasedFile |
truncate(String path, Size size=0) | BALL::File | static
truncate(Size size=0) | BALL::File |
Type enum name | BALL::File |
TYPE__BLOCK_SPECIAL_FILE enum value | BALL::File |
TYPE__CHAR_SPECIAL_FILE enum value | BALL::File |
TYPE__DIRECTORY enum value | BALL::File |
TYPE__FIFO_SPECIAL_FILE enum value | BALL::File |
TYPE__REGULAR_FILE enum value | BALL::File |
TYPE__SOCKET enum value | BALL::File |
TYPE__SYMBOLIC_LINK enum value | BALL::File |
TYPE__UNKNOWN enum value | BALL::File |
unregisterTransformation(const String &pattern) | BALL::File | static
write(const Molecule &molecule) | BALL::KCFFile | virtual
write(const System &system) | BALL::KCFFile | virtual
zipped_filename_ | BALL::GenericMolFile | protected
~File() | BALL::File | virtual
~GenericMolFile() | BALL::GenericMolFile | virtual
~KCFFile() | BALL::KCFFile | virtual