Loading...
Searching...
No Matches
Here is a list of all functions with links to the classes they belong to:

### - p -

- paintEngine() : BALL::VIEW::GLOffscreenTarget
- paintEvent() : BALL::VIEW::ColorButton, BALL::VIEW::GLRenderWindow, BALL::VIEW::Scene, BALL::VIEW::SDWidget, BALL::VIEW::TextEditorWidget::LineNumbers
- paintGL() : BALL::VIEW::Scene
- Pair6_12InteractionEnergyProcessor() : BALL::Pair6_12InteractionEnergyProcessor
- Pair6_12RDFIntegrator() : BALL::Pair6_12RDFIntegrator
- PairExpInteractionEnergyProcessor() : BALL::PairExpInteractionEnergyProcessor
- PairExpRDFIntegrator() : BALL::PairExpRDFIntegrator
- ParameterDescription() : BALL::ParamFile::ParameterDescription
- Parameters() : BALL::Parameters
- ParameterSection() : BALL::ParameterSection
- ParamFile() : BALL::ParamFile
- parse() : BALL::CommandlineParser, BALL::ExpressionParser, BALL::GAFFCESParser, BALL::SmartsParser, BALL::SmilesParser
- parseAtomtypeTableFile_() : BALL::GAFFTypeProcessor
- parseBinaryFingerprint() : BALL::BinaryFingerprintMethods
- parseColumnFormat() : BALL::LineBasedFile
- ParsedFunction() : BALL::ParsedFunction< arg >
- ParsedFunctionDialog() : BALL::VIEW::ParsedFunctionDialog
- ParseError() : BALL::Exception::ParseError
- parseLine() : BALL::PDBFile
- parseLine_() : BALL::VIEW::PyWidget
- parseNestedParameterName() : BALL::ParamFile
- parseRecordANISOU() : BALL::PDBFile
- parseRecordATOM() : BALL::PDBFile
- parseRecordAUTHOR() : BALL::PDBFile
- parseRecordCAVEAT() : BALL::PDBFile
- parseRecordCISPEP() : BALL::PDBFile
- parseRecordCOMPND() : BALL::PDBFile
- parseRecordCONECT() : BALL::PDBFile
- parseRecordCRYST1() : BALL::PDBFile
- parseRecordDBREF() : BALL::PDBFile
- parseRecordEND() : BALL::PDBFile
- parseRecordENDMDL() : BALL::PDBFile
- parseRecordEXPDTA() : BALL::PDBFile
- parseRecordFORMUL() : BALL::PDBFile
- parseRecordFTNOTE() : BALL::PDBFile
- parseRecordHEADER() : BALL::PDBFile
- parseRecordHELIX() : BALL::PDBFile
- parseRecordHET() : BALL::PDBFile
- parseRecordHETATM() : BALL::PDBFile
- parseRecordHETNAM() : BALL::PDBFile
- parseRecordHETSYN() : BALL::PDBFile
- parseRecordHYDBND() : BALL::PDBFile
- parseRecordJRNL() : BALL::PDBFile
- parseRecordKEYWDS() : BALL::PDBFile
- parseRecordLINK() : BALL::PDBFile
- parseRecordMASTER() : BALL::PDBFile
- parseRecordMODEL() : BALL::PDBFile
- parseRecordMODRES() : BALL::PDBFile
- parseRecordMTRIX1() : BALL::PDBFile
- parseRecordMTRIX2() : BALL::PDBFile
- parseRecordMTRIX3() : BALL::PDBFile
- parseRecordOBSLTE() : BALL::PDBFile
- parseRecordORIGX1() : BALL::PDBFile
- parseRecordORIGX2() : BALL::PDBFile
- parseRecordORIGX3() : BALL::PDBFile
- parseRecordREMARK() : BALL::PDBFile
- parseRecordREVDAT() : BALL::PDBFile
- parseRecordSCALE1() : BALL::PDBFile
- parseRecordSCALE2() : BALL::PDBFile
- parseRecordSCALE3() : BALL::PDBFile
- parseRecordSEQADV() : BALL::PDBFile
- parseRecordSEQRES() : BALL::PDBFile
- parseRecordSHEET() : BALL::PDBFile
- parseRecordSIGATM() : BALL::PDBFile
- parseRecordSIGUIJ() : BALL::PDBFile
- parseRecordSITE() : BALL::PDBFile
- parseRecordSLTBRG() : BALL::PDBFile
- parseRecordSOURCE() : BALL::PDBFile
- parseRecordSPRSDE() : BALL::PDBFile
- parseRecordSSBOND() : BALL::PDBFile
- parseRecordTER() : BALL::PDBFile
- parseRecordTITLE() : BALL::PDBFile
- parseRecordTURN() : BALL::PDBFile
- parseRecordTVECT() : BALL::PDBFile
- PartialBondOrderAssignment() : BALL::PartialBondOrderAssignment
- PartialChargeBase() : BALL::PartialChargeBase
- PartialChargeProcessor() : BALL::PartialChargeProcessor
- partitionInputData() : BALL::QSAR::QSARData
- partner1Chosen() : BALL::VIEW::DockDialog
- partner2Chosen() : BALL::VIEW::DockDialog
- paste() : BALL::VIEW::MolecularControl, BALL::VIEW::PyWidget
- pasteAllowedFor_() : BALL::VIEW::MolecularControl
- Path() : BALL::Path
- path() : BALL::FileSystem
- pause() : BALL::DockingAlgorithm
- pauseClicked() : BALL::VIEW::DockProgressDialog
- pauseRendering() : BALL::VIEW::RenderSetup
- PB() : BALL::PB
- PBScoring() : BALL::PBScoring
- PCMCavFreeEnergyProcessor() : BALL::PCMCavFreeEnergyProcessor
- PCRModel() : BALL::QSAR::PCRModel
- PDBAtom() : BALL::PDBAtom
- PDBAtomIteratorTraits() : BALL::PDBAtomIteratorTraits
- pdbDownloadChecked() : BALL::VIEW::DownloadElectronDensity
- PDBFile() : BALL::PDBFile
- PDBInfo() : BALL::PDBInfo
- PDBInfoEditorWidget() : BALL::VIEW::PDBInfoEditorWidget
- PDBRecords() : BALL::PDBRecords
- Peak() : BALL::Peak< PositionType >
- Peak_() : BALL::GeometricFit::Peak_
- PeakList() : BALL::PeakList< PT >
- peelNextRing_() : BALL::RingAnalyser
- peelRings_() : BALL::RingAnalyser
- penaltyOfNextSolution() : BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- pentakisDodecaeder() : BALL::TriangulatedSphere
- peptide_() : BALL::Peptides::PeptideBuilder
- PeptideBuilder() : BALL::Peptides::PeptideBuilder
- PeptideCapProcessor() : BALL::PeptideCapProcessor
- PeptideDialog() : BALL::VIEW::PeptideDialog
- performRequiredUpdates_() : BALL::ForceField
- PeriodicBoundary() : BALL::PeriodicBoundary
- periodicBoundaryClicked() : BALL::VIEW::AmberConfigurationDialog, BALL::VIEW::CharmmConfigurationDialog
- PersistenceManager() : BALL::PersistenceManager
- PersistentObject() : BALL::PersistentObject
- persistentRead() : BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::Composite, BALL::CrystalInfo, BALL::Fragment, BALL::Molecule, BALL::NamedProperty, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::PDBInfo, BALL::PDBRecords, BALL::PersistentObject, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, BALL::System, BALL::TVector2< T >, BALL::VIEW::Stage::Material
- persistentWrite() : BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::Composite, BALL::CrystalInfo, BALL::Fragment, BALL::Molecule, BALL::NamedProperty, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::PDBInfo, BALL::PDBRecords, BALL::PersistentObject, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, BALL::System, BALL::TVector2< T >, BALL::VIEW::Stage::Material
- PharmacophoreConstraint() : BALL::PharmacophoreConstraint
- phase() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- phe_pressed() : BALL::VIEW::PeptideDialog
- PickingMode() : BALL::VIEW::PickingMode
- pickObject() : BALL::VIEW::RTfactRenderer
- pickObjects() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer, BALL::VIEW::RenderSetup, BALL::VIEW::RTfactRenderer, BALL::VIEW::Scene
- pickObjects1() : BALL::VIEW::GLRenderer
- pickObjects2() : BALL::VIEW::GLRenderer
- pickParent_() : BALL::VIEW::PickingMode, BALL::VIEW::Scene
- PiecewiseFunction() : BALL::PiecewiseFunction
- PiecewisePolynomial() : BALL::PiecewisePolynomial
- PierottiCavFreeEnergyProcessor() : BALL::PierottiCavFreeEnergyProcessor
- PixelFormat() : BALL::VIEW::PixelFormat
- placePeptideBondH_() : BALL::AddHydrogenProcessor
- placeSubstituent_() : BALL::SDGenerator
- planarAtom_() : BALL::GAFFTypeProcessor
- plot() : BALL::VIEW::SDWidget
- PLP() : BALL::PLP
- PLPScoring() : BALL::PLPScoring
- PLSModel() : BALL::QSAR::PLSModel
- pluginChanged() : BALL::VIEW::PluginDialog
- PluginDialog() : BALL::VIEW::PluginDialog
- PluginDirectoryModel() : BALL::VIEW::PluginDirectoryModel
- PluginManager() : BALL::PluginManager
- PluginModel() : BALL::VIEW::PluginModel
- pluginsLoaded() : BALL::VIEW::PluginModel
- Point() : BALL::VIEW::Point
- Polarity() : BALL::Polarity
- PolarSolvation() : BALL::PolarSolvation
- PolarVdWSurface() : BALL::PolarVdWSurface
- pop_back() : BALL::PDBRecords, BALL::String
- popRepresentationToUpdate() : BALL::VIEW::RepresentationManager
- populateContextMenu() : BALL::VIEW::EditMode, BALL::VIEW::InteractionMode, BALL::VIEW::InteractionModeManager, BALL::VIEW::MoveMode
- PoseClustering() : BALL::PoseClustering
- PosePointer() : BALL::PoseClustering::PosePointer
- PositionColorProcessor() : BALL::VIEW::PositionColorProcessor
- positionTypeChanged() : BALL::VIEW::LightSettings
- PositivePolarVdWSurface() : BALL::PositivePolarVdWSurface
- PositiveVdWSurface() : BALL::PositiveVdWSurface
- Postcondition() : BALL::Exception::Postcondition
- postorder() : BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- PostOrderFolding() : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- postProcessAtomTypes_() : BALL::GAFFTypeProcessor
- postprocessHelices_() : BALL::PDBFile
- postprocessRandomCoils_() : BALL::PDBFile
- postprocessSheetsTurns_() : BALL::PDBFile
- postprocessSSBonds_() : BALL::PDBFile
- Potential1210() : BALL::Potential1210
- POVColorRGBA() : BALL::VIEW::POVRenderer
- POVFinish() : BALL::VIEW::POVRenderer
- POVRenderer() : BALL::VIEW::POVRenderer
- POVVector3() : BALL::VIEW::POVRenderer
- preassignPenaltyClasses_() : BALL::AssignBondOrderProcessor
- precalculateGrids() : BALL::GridBasedScoring
- PreciseTime() : BALL::PreciseTime
- precisionBoxChanged() : BALL::VIEW::DisplayProperties
- precisionSliderChanged() : BALL::VIEW::DisplayProperties
- precomputeAtomBijection_() : BALL::PoseClustering
- precomputeAtomProperties_() : BALL::GAFFTypeProcessor
- precomputeBondLengthPenalties_() : BALL::AssignBondOrderProcessor
- precomputeBondProperties_() : BALL::GAFFTypeProcessor
- preComputeBonds_() : BALL::HBondProcessor
- Precondition() : BALL::Exception::Precondition
- predecessor() : BALL::RingAnalyser::Ring
- predict() : BALL::QSAR::ALLModel, BALL::QSAR::GPModel, BALL::QSAR::KernelModel, BALL::QSAR::LDAModel, BALL::QSAR::LinearModel, BALL::QSAR::LogitModel, BALL::QSAR::Model, BALL::QSAR::NBModel, BALL::QSAR::SNBModel
- PredictionConfiguration() : BALL::QSAR::PredictionConfiguration
- Preferences() : BALL::VIEW::Preferences
- PreferencesEntry() : BALL::VIEW::PreferencesEntry
- PreferencesObject() : BALL::PreferencesObject
- preorder() : BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- prepare() : BALL::StructurePreparer
- prepare_() : BALL::SDGenerator
- prepareBufferedRendering() : BALL::VIEW::BufferedRenderer, BALL::VIEW::CudaVolumeRenderer, BALL::VIEW::RTfactRenderer
- prepareGridTextures() : BALL::VIEW::RenderSetup, BALL::VIEW::Scene
- prepareRendering() : BALL::VIEW::GLOffscreenTarget, BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- prepareUpscaling() : BALL::VIEW::GLOffscreenTarget
- prepend() : BALL::AtomContainer, BALL::Chain, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, BALL::System
- prependChild() : BALL::Composite
- PrincipalMomentOfInertia() : BALL::PrincipalMomentOfInertia
- PrincipalMomentOfInertiaX() : BALL::PrincipalMomentOfInertiaX
- PrincipalMomentOfInertiaY() : BALL::PrincipalMomentOfInertiaY
- PrincipalMomentOfInertiaZ() : BALL::PrincipalMomentOfInertiaZ
- print() : BALL::VIEW::PixelFormat
- printAPS() : BALL::GAFFCESParser::APSMatcher
- printCluster_() : BALL::PoseClustering
- printClusters() : BALL::PoseClustering
- printClusterScores() : BALL::PoseClustering
- printCursorPosition_() : BALL::VIEW::PyWidget
- printEnergy() : BALL::EnergyMinimizer
- printFragments() : BALL::IMGDock
- printHelp() : BALL::CommandlineParser
- printMatrix() : BALL::QSAR::QSARData, BALL::ScoringOptimizer
- printResult() : BALL::GridBasedScoring, BALL::ScoringFunction
- printResults() : BALL::IMGDock
- printScene() : BALL::VIEW::Scene
- printSelectionInfos() : BALL::VIEW::MainControl
- printToolInfo() : BALL::CommandlineParser
- printUCK() : BALL::UCK
- printVariables_() : BALL::PoseClustering
- pro_pressed() : BALL::VIEW::PeptideDialog
- probeRadiusChanged() : BALL::VIEW::ModelSettingsDialog
- proceed() : BALL::DockingAlgorithm
- processEvent_() : BALL::VIEW::TestFramework
- processEvents() : BALL::VIEW::MainControl
- processMoveModeMouseEvents_() : BALL::VIEW::MoveMode
- processMultiMoleculeFile() : BALL::DockingAlgorithm
- processRequest() : BALL::PyServer
- processRotateModeMouseEvents_() : BALL::VIEW::RotateMode
- Product() : BALL::Product< First, Second, DataType >
- projectionModeChanged() : BALL::VIEW::RenderSetup, BALL::VIEW::Scene
- prolineActivated() : BALL::VIEW::PeptideDialog
- prolineDeactivated() : BALL::VIEW::PeptideDialog
- PropDeleteWidget() : BALL::VIEW::PropDeleteWidget
- PropEditorWidget() : BALL::VIEW::PropEditorWidget
- PropertiesForShift_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- Property() : BALL::SmartsParser::SPAtom::Property
- PropertyEditor() : BALL::VIEW::PropertyEditor
- PropertyError() : BALL::QSAR::Exception::PropertyError
- PropertyManager() : BALL::PropertyManager
- Protein() : BALL::Protein
- ProteinIteratorTraits() : BALL::ProteinIteratorTraits
- protomode() : BALL::VIEW::ExportGeometryDialog
- proxyEnabled() : BALL::VIEW::NetworkPreferences
- proxyModeChanged() : BALL::VIEW::NetworkPreferences
- prune() : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >
- PTE_() : BALL::PTE_
- PTEDialog() : BALL::VIEW::PTEDialog
- PubChemDialog() : BALL::VIEW::PubChemDialog
- PubChemDownloader() : BALL::PubChemDownloader
- push() : BALL::RingPerceptionProcessor::PathMessage_
- push_back() : BALL::PDBRecords, BALL::String
- pushbackNCS() : BALL::CrystalInfo
- pushBackNormal() : BALL::TSurface< T >
- pushBackTriangle() : BALL::TSurface< T >
- pushBackVertex() : BALL::TSurface< T >
- pushCFS_() : BALL::SDGenerator
- put() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- putbackLine() : BALL::QSAR::ConfigIO
- PyCAPIKernel() : BALL::PyCAPIKernel
- PyColorRGBAVector() : BALL::PyColorRGBAVector
- PyCompositeList() : BALL::PyCompositeList
- PyDatasetVector() : BALL::PyDatasetVector
- PyIndexList() : BALL::PyIndexList
- PyKernel() : BALL::PyKernel
- PyServer() : BALL::PyServer
- PythonHighlighter() : BALL::VIEW::PythonHighlighter
- PythonSettings() : BALL::VIEW::PythonSettings
- PythonValidator() : BALL::VIEW::PythonValidator
- PyWidget() : BALL::VIEW::PyWidget