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Here is a list of all class members with links to the classes they belong to:

### - d -

- d : BALL::TLine3< T >
- D_1_ : BALL::ConjugateGradientMinimizer
- D_4_ : BALL::ConjugateGradientMinimizer
- dashedBondsEnabled() : BALL::VIEW::AddBallAndStickModel
- dat_ : BALL::Bruker2DFile
- Data() : BALL::ResidueTorsions::Data
- data : BALL::CIFFile::Datablock, BALL::GAMESSDatFile::block, BALL::HashGridBox3< Item >, BALL::QSAR::Model, BALL::QSAR::PredictionConfiguration, BALL::QSAR::ValidationConfiguration, BALL::String, BALL::VIEW::Message, BALL::VIEW::PluginDirectoryModel, BALL::VIEW::PluginModel, BALL::VIEW::ShortcutTableModel
- data_ : BALL::BinaryFileAdaptor< T >, BALL::EdgeItem< Node, Edge >, BALL::MMFF94AtomTypes, BALL::NodeItem< Node, Edge >, BALL::Rescoring, BALL::SimpleDownloaderHelper::UPThread, BALL::Spectrum< DataT, PeakT, PositionT >, BALL::TContourLine< T >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- data_file : BALL::QSAR::FeatureSelectionConfiguration, BALL::QSAR::ModelConfiguration
- data_folder_ : BALL::PartialChargeBase, BALL::QSAR::QSARData
- dataAdress_ : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- database : BALL::PDB::RecordSEQADV
- datablocks_ : BALL::CIFFile
- datablocks_hash_ : BALL::CIFFile
- DataContainer : BALL::HashGridBox3< Item >
- Datacontent() : BALL::CIFFile::Datacontent
- dataitem : BALL::CIFFile::Datacontent
- DataIterator : BALL::HashGridBox3< Item >
- DataIteratorPosition : BALL::HashGridBox3< Item >
- DataIteratorTraits : BALL::HashGridBox3< Item >, BALL::HashGridBox3< Item >::DataIteratorTraits
- dataLength_ : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- Dataset() : BALL::VIEW::Dataset
- dataset_ : BALL::VIEW::DatasetMessage
- dataset_to_item_ : BALL::VIEW::DatasetController
- dataset_type_ : BALL::VIEW::DatasetMessage
- DatasetControl() : BALL::VIEW::DatasetControl, BALL::VIEW::DatasetController
- DatasetController() : BALL::VIEW::DatasetController
- DatasetMessage() : BALL::VIEW::DatasetMessage
- DataType : BALL::Spectrum< DataT, PeakT, PositionT >
- date : BALL::PDB::RecordSPRSDE
- Db : BALL::Element
- db_ : BALL::Mutator
- db_id_code : BALL::PDB::RecordSEQADV
- db_res : BALL::PDB::RecordSEQADV
- db_seq : BALL::PDB::RecordSEQADV
- DC_SOLUTE : BALL::GeneralizedBornModel::Default, BALL::GeneralizedBornModel::Option
- DC_SOLVENT : BALL::GeneralizedBornModel::Default, BALL::GeneralizedBornModel::Option
- DCDFile() : BALL::DCDFile
- deactivate() : BALL::BALLPlugin, BALL::TCPServer, BALL::TCPServerThread, BALL::VIEW::InteractionMode, BALL::VIEW::PickingMode, BALL::VIEW::ServerWidget
- DEBYE : BALL::FDPB::Boundary
- decodeBase64() : BALL::String
- DECREASE_STEPWIDTH : BALL::IMGDock::Default, BALL::IMGDock::Option
- deepCopyOfBacktrackers_() : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- DEFAULT : BALL::VIEW::DockingController, BALL::VIEW::EditOperation
- default_color_ : BALL::VIEW::ColorButton, BALL::VIEW::ColorProcessor
- DEFAULT_COLOR_FOR_OUTSIDE_COLORS : BALL::VIEW::InterpolateColorProcessor
- default_communicator_ : BALL::MPISupport
- default_correlation_cutoff : BALL::QSAR::Registry
- default_font_ : BALL::VIEW::Scene
- DEFAULT_FRAGMENT_DB : BALL::RotamerLibrary
- default_gridsearch_par1_start : BALL::QSAR::Registry
- default_gridsearch_par2_start : BALL::QSAR::Registry
- default_gridsearch_recursion : BALL::QSAR::Registry
- default_gridsearch_steps : BALL::QSAR::Registry
- default_gridsearch_stepwidth : BALL::QSAR::Registry
- default_hydrogen_target_nucleus_factor_ : BALL::HaighMallionShiftProcessor
- default_k : BALL::QSAR::Registry
- default_kernel_par1 : BALL::QSAR::Registry
- default_kernel_par2 : BALL::QSAR::Registry
- DEFAULT_LIBRARY : BALL::RotamerLibrary
- default_lights_ : BALL::VIEW::LightSettings
- default_mopac_keywords_ : BALL::MOPACInputFile
- default_nested_folds : BALL::QSAR::Registry
- default_no_boostrap_samples : BALL::QSAR::Registry
- default_no_opt_steps_ : BALL::QSAR::Model
- default_no_permutations : BALL::QSAR::Registry
- default_page_ : BALL::VIEW::HelpViewer
- default_peak_ : BALL::Experiment< PeakListType >
- DEFAULT_PROCESSOR : BALL::Composite
- default_rbf_par : BALL::QSAR::Registry
- DEFAULT_UNARY_PREDICATE : BALL::Composite
- default_valdition_fraction : BALL::QSAR::Registry
- default_values_ : BALL::VIEW::PreferencesEntry
- default_visible_ : BALL::VIEW::ModularWidget
- defaultAssign_() : BALL::Enumerator< Container, SiteIterator, Variant >
- defaultsPressed() : BALL::VIEW::LightSettings
- defineFlexibleResiduesGridSet() : BALL::GridBasedScoring
- defineGridSet() : BALL::GridBasedScoring
- defineInputAsTemporary() : BALL::GenericMolFile
- defineReceptorGridSet() : BALL::GridBasedScoring
- DEG_PER_RAD : BALL::Constant
- DEG_PHI : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- DEG_PSI : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- DEG_THETA : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- DEGREE : BALL::SmartsParser::SPAtom
- degree_ : BALL::PiecewisePolynomial
- DEGREE_INTERVAL : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- delete_action_ : BALL::VIEW::MainControl
- delete_atom_ : BALL::VIEW::EditMode
- delete_conformation_set_ : BALL::PoseClustering
- DELETE_EXISTING_BONDS : BALL::BuildBondsProcessor::Default, BALL::BuildBondsProcessor::Option
- delete_force_field_ : BALL::ForceFieldEvaluation
- delete_id_ : BALL::VIEW::MolecularControl
- DELETE_OVERESTIMATED_BONDS : BALL::BuildBondsProcessor::Default, BALL::BuildBondsProcessor::Option
- deleteChildrenList_() : BALL::Composite
- deleteClicked() : BALL::VIEW::MainControl
- deleteColumn_() : BALL::VIEW::DockResultDialog
- deleteCurrentAtomTriggered_() : BALL::VIEW::EditMode
- deleteCurrentBondTriggered_() : BALL::VIEW::EditMode
- deleteCurrentItems() : BALL::VIEW::DatasetControl, BALL::VIEW::GenericControl, BALL::VIEW::GeometricControl, BALL::VIEW::MolecularControl
- deleteDataset() : BALL::VIEW::DatasetController
- deleteDataset_() : BALL::VIEW::DatasetController, BALL::VIEW::DockResultController, BALL::VIEW::RaytraceableGridController, BALL::VIEW::RegularData3DController, BALL::VIEW::TrajectoryController, BALL::VIEW::VectorGridController
- deleteDatasets() : BALL::VIEW::DatasetController
- deleteDescriptorIDs() : BALL::QSAR::Model
- deleteEdge() : BALL::TSimpleMolecularGraph< Node, Edge >
- deleteEdge_() : BALL::NodeItem< Node, Edge >
- deleteEntry() : BALL::ResourceEntry
- deleteEntryArray() : BALL::ResourceEntry
- deleteIsolatedEdges() : BALL::TriangulatedSurface
- deleteIsolatedPoints() : BALL::TriangulatedSurface
- deleteLine() : BALL::INIFile
- deleteNode() : BALL::TSimpleMolecularGraph< Node, Edge >
- deleteNode_() : BALL::HashSet< Key >
- deleteOverestimatedBonds_() : BALL::BuildBondsProcessor
- deleteProperty() : BALL::VIEW::PropEditorWidget
- deleteProperty_() : BALL::VIEW::PropertyEditor
- deleteRotamer() : BALL::ResidueRotamerSet
- deleteRotamers() : BALL::ResidueRotamerSet
- deleteScoring() : BALL::DockResult
- deleteSection() : BALL::INIFile
- deleteSimilarFaces() : BALL::ReducedSurface
- deleteTexture() : BALL::VIEW::GLRenderWindow
- deleteVariants() : BALL::Enumerator< Container, SiteIterator, Variant >
- DELIMITER_TAG : BALL::KCFFile
- DELOCALIZED_BOND : BALL::GAFFCESParser::APSMatcher
- DELOCALIZED_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
- DELTA : BALL::GeneralizedBornModel::Default, BALL::GeneralizedBornModel::Option
- delta : BALL::FragmentDB::BuildBondsProcessor::Connection
- delta_r : BALL::MMFF94StretchBend::Stretch
- delta_theta : BALL::MMFF94StretchBend::Bend
- Density() : BALL::Density
- density_ : BALL::SurfaceProcessor, BALL::TriangulatedSAS, BALL::TriangulatedSES, BALL::TriangulatedSurface
- DEPOSITED : BALL::SDGenerator
- deposition_date : BALL::PDB::RecordHEADER
- depositPFU_() : BALL::SDGenerator
- depth_ : BALL::SmartsMatcher, BALL::TBox3< T >
- DEPTH_CHANNEL : BALL::VIEW::ChannelFormat
- depth_vector_ : BALL::TBox3< T >
- description : BALL::ParamFile::ParameterDescription, BALL::VIEW::EditOperation, BALL::VIEW::PubChemDialog::ParsedResult_
- description_ : BALL::Result
- descriptions_ : BALL::Options, BALL::VIEW::AssignBondOrderResultsDialog, BALL::VIEW::PubChemDialog
- Descriptor() : BALL::Descriptor
- descriptor_IDs_ : BALL::QSAR::Model
- descriptor_matrix_ : BALL::QSAR::Model, BALL::QSAR::QSARData
- descriptor_names_ : BALL::QSAR::Model
- descriptor_source_model : BALL::QSAR::ModelConfiguration
- descriptor_transformations_ : BALL::QSAR::Model, BALL::QSAR::QSARData
- deselect() : BALL::Composite, BALL::Selectable, BALL::VIEW::MolecularControl, BALL::VIEW::Scene
- deselect_action_ : BALL::VIEW::MolecularControl
- deselect_id_ : BALL::VIEW::MolecularControl
- deselectCompositeRecursive() : BALL::VIEW::MainControl
- DeselectControlsMessage() : BALL::VIEW::DeselectControlsMessage
- DESELECTED_COMPOSITE : BALL::VIEW::CompositeMessage
- deselectOtherControls_() : BALL::VIEW::GenericControl
- deserializeWardClusterTree() : BALL::PoseClustering
- desktop_size_ : BALL::VIEW::InteractionMode
- destroy() : BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Composite, BALL::ConnectedToPredicate::CTPNode, BALL::Directory, BALL::FDPB, BALL::FragmentDB, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::List< Value >, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::PropertyManager, BALL::Protein, BALL::RegularExpression, BALL::Residue, BALL::ResourceEntry, BALL::ResourceFile, BALL::RuleProcessor, BALL::SecondaryStructure, BALL::SmartsMatcher::RecStructPool_, BALL::String, BALL::StringHashMap< Value >, BALL::Substring, BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >, BALL::VIEW::ConnectionObject, BALL::VIEW::ModularWidget
- destroy_() : BALL::EvolutionaryDocking, BALL::GeometricFit
- destroyBond() : BALL::Atom
- destroyBonds() : BALL::Atom, BALL::AtomContainer
- destroyGrids() : BALL::FDPB
- details : BALL::NMRStarFile::MolecularSystem::RelatedDB, BALL::NMRStarFile::MonomericPolymer, BALL::NMRStarFile::Sample
- determineMethodOfAtomPairGeneration() : BALL::AmberNonBonded, BALL::CharmmNonBonded, BALL::MMFF94NonBonded
- deviation_sigma_ : BALL::CCP4File
- DeviceEvent() : BALL::VIEW::DeviceEvent
- dfs() : BALL::RingFinder
- dG_free : BALL::CharmmEEF1::Values
- dG_free_ : BALL::CharmmEEF1
- dG_ref : BALL::CharmmEEF1::Values
- dG_ref_ : BALL::CharmmEEF1
- dH_ref : BALL::CharmmEEF1::Values
- dH_ref_ : BALL::CharmmEEF1
- dialog_ : BALL::VIEW::CalculateFDPBThread, BALL::VIEW::GenerateCrystalThread, BALL::VIEW::RegularData3DController, BALL::VIEW::VectorGridController
- dialogButtonClicked_() : BALL::VIEW::AssignBondOrderConfigurationDialog
- dialogButtonsClicked_() : BALL::VIEW::Preferences
- dialogs_per_ssm_ : BALL::VIEW::TrajectoryController
- dictionary_type : BALL::MOL2File::SubstructureStruct
- DIELECTRIC_SMOOTHING : BALL::FDPB::Default, BALL::FDPB::Option
- difference() : BALL::Spectrum< DataT, PeakT, PositionT >
- difference_type : BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::HashSet< Key >, BALL::PDBRecords, BALL::String, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::CompositeManager
- differenceSpectrum() : BALL::Spectrum< DataT, PeakT, PositionT >
- DifferenceType : BALL::PDBRecords
- DifferentiableScoringFunction() : BALL::DifferentiableScoringFunction
- DiffGridBasedScoring() : BALL::DiffGridBasedScoring
- dimension_ : BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- DIPOLE : BALL::FDPB::Boundary
- DIRECT_RENDERING : BALL::VIEW::GLRenderer
- direction_ : BALL::EnergyMinimizer, BALL::VIEW::LightSource
- DIRECTIONAL : BALL::VIEW::LightSource
- Directory() : BALL::Directory
- directorySelectionChanged() : BALL::VIEW::PluginDialog
- disable() : BALL::PeriodicBoundary, BALL::ResidueChecker, BALL::ScoreGridSet, BALL::ScoringComponent
- disableAtoms() : BALL::SDFile
- disableAutomaticResultCreation() : BALL::DockResultFile
- disabled : BALL::LogStreamBuf::StreamStruct
- disableLoggingToFile() : BALL::VIEW::MainControl
- disableOutput() : BALL::LogStream
- disableSelection() : BALL::ForceField, BALL::ResidueChecker
- disableStoreInteractions() : BALL::Atom
- disableTransformation() : BALL::File
- disableVelocityStorage() : BALL::DCDFile
- Disc() : BALL::VIEW::Disc
- disconnect() : BALL::DisulfidBondProcessor
- DISCRETE__CHI : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- DISCRETE__DISCRETE : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- DISCRETE__REAL : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- discretizeFeatures : BALL::QSAR::ClassificationModel
- discretizeTestDataFeatures : BALL::QSAR::ClassificationModel
- discretizeY() : BALL::QSAR::QSARData
- DisjointSet : BALL::ConnectedComponentsProcessor
- DISPLAY : BALL::VIEW::MainControl
- DISPLAY_ANIMATION : BALL::VIEW::MainControl
- DISPLAY_CREATE : BALL::VIEW::MainControl
- display_lists_ : BALL::VIEW::GLRenderer
- display_lists_index_ : BALL::VIEW::GLRenderer
- DISPLAY_LISTS_RENDERING : BALL::VIEW::GLRenderer
- display_mode_ : BALL::DockingAlgorithm
- DISPLAY_STEREO : BALL::VIEW::MainControl
- DISPLAY_VIEWPOINT : BALL::VIEW::MainControl
- DISPLAYLIST_NOT_DEFINED : BALL::VIEW::GLDisplayList
- DisplayListHashMap : BALL::VIEW::GLRenderer
- DisplayListRedeclaration() : BALL::VIEW::GLDisplayList::DisplayListRedeclaration
- displayMatrix() : BALL::QSAR::QSARData
- DISPLAYMODE : BALL::DockingAlgorithm
- DisplayProperties() : BALL::VIEW::DisplayProperties
- dist : BALL::FragmentDB::BuildBondsProcessor::Connection
- distance() : BALL::QSAR::Statistics
- distance_action_ : BALL::VIEW::MolecularControl
- DISTANCE_DEPENDENT_DIELECTRIC : BALL::AmberFF::Default, BALL::AmberFF::Option, BALL::CharmmFF::Default, BALL::CharmmFF::Option, BALL::MMFF94::Default, BALL::MMFF94::Option
- DISTANCE_THRESHOLD : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- DISTANCE_TOLERANCE : BALL::CHPI::Default, BALL::CHPI::Option, BALL::CHPISlick::Default, BALL::CHPISlick::Option
- distributeDatapoints() : BALL::MPISupport
- DisulfidBond : BALL::DisulfidBondProcessor
- disulfidbond_action_ : BALL::VIEW::MolecularControl
- DisulfidBondProcessor() : BALL::DisulfidBondProcessor
- DisulfidBonds : BALL::DisulfidBondProcessor
- Division() : BALL::Division< First, Second, DataType >
- DivisionByZero() : BALL::Exception::DivisionByZero
- DLArrayHelper() : BALL::SimpleDownloaderHelper::DLArrayHelper
- DLHelper() : BALL::SimpleDownloaderHelper::DLHelper
- DLThread() : BALL::SimpleDownloaderHelper::DLThread
- DNA_base_radius_ : BALL::VIEW::AddCartoonModel
- DNA_helix_radius_ : BALL::VIEW::AddCartoonModel
- DNA_ladder_radius_ : BALL::VIEW::AddCartoonModel
- DNAMutator() : BALL::DNAMutator
- do_not_resize_ : BALL::VIEW::TRenderWindow< taPixelDatatype >
- dock_alg_ : BALL::VIEW::DockingThread
- DockDialog() : BALL::VIEW::DockDialog
- docker_ : BALL::DockProblem
- docking_algorithm_ : BALL::DockResult, BALL::GeneticAlgorithm
- docking_options_ : BALL::DockResult
- DockingAlgorithm() : BALL::DockingAlgorithm
- DockingController() : BALL::VIEW::DockingController
- DockingFinishedMessage() : BALL::VIEW::DockingFinishedMessage
- DockingThread() : BALL::VIEW::DockingThread
- dockLigand() : BALL::DockingAlgorithm, BALL::EvolutionaryDocking, BALL::IMGDock
- DockProblem() : BALL::DockProblem
- DockProgressDialog() : BALL::VIEW::DockProgressDialog
- DockResult() : BALL::DockResult
- DockResultController() : BALL::VIEW::DockResultController
- DockResultDialog() : BALL::VIEW::DockResultDialog
- DockResultFile() : BALL::DockResultFile
- DockWidget() : BALL::VIEW::DockWidget
- docu_entries_ : BALL::VIEW::HelpViewer
- doFFT() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- doiFFT() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- done : BALL::QSAR::FeatureSelectionConfiguration, BALL::QSAR::InputConfiguration, BALL::QSAR::InputPartitioningConfiguration, BALL::QSAR::ModelConfiguration, BALL::QSAR::PredictionConfiguration, BALL::QSAR::ValidationConfiguration
- donor_ : BALL::HBondProcessor::HBond
- donor_acceptor : BALL::MMFF94VDWParameters::VDWEntry
- donor_is_hydrogen_ : BALL::HBondProcessor::HBond
- donorIsHydrogen() : BALL::HBondProcessor::HBond
- donors_ : BALL::HBondProcessor, BALL::HBondShiftProcessor
- doNotAutoActivatePlugin() : BALL::PluginManager
- doNotResize() : BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- doPreTranslation_() : BALL::GeometricFit
- dot_size_ : BALL::VIEW::GridVisualisation
- DOTS : BALL::VIEW::GridVisualisation
- DOUBLE : BALL::NamedProperty, BALL::ParamFile, BALL::SmartsParser::SPBond
- DOUBLE_BOND : BALL::GAFFCESParser::APSMatcher
- DOUBLE_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
- double_parameter_ : BALL::DockProblem
- DoubleEditorWidget() : BALL::VIEW::DoubleEditorWidget
- DoubleGene() : BALL::DoubleGene
- DOUBLELIST : BALL::ParamFile
- DoubleParameter() : BALL::DoubleParameter
- down_sampling_factor_ : BALL::VIEW::GLRenderWindow
- DownloadElectronDensity() : BALL::VIEW::DownloadElectronDensity
- downloadEnded_() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- downloadFinished() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile, BALL::VIEW::PubChemDialog
- DownloadPDBFile() : BALL::VIEW::DownloadPDBFile
- downloadProgress() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- downloadSDFByCID() : BALL::PubChemDownloader
- downloadSDFByName() : BALL::PubChemDownloader
- downloadStarted_() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- downloadToBuffer() : BALL::SimpleDownloader
- downloadToFile() : BALL::SimpleDownloader
- downsampling_factor_ : BALL::VIEW::Scene
- downwardClicked() : BALL::VIEW::DockResultDialog
- dp_ : BALL::EvolutionaryDocking
- DPBackTracking_() : BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- DPBackTrackingCombiner_() : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_, BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- DPConfig_() : BALL::FPTBondOrderStrategy::DPConfig_
- DPConstRow_ : BALL::FPTBondOrderStrategy
- DPJoinMap_ : BALL::FPTBondOrderStrategy
- DPMap_ : BALL::FPTBondOrderStrategy
- DPPairIt_ : BALL::FPTBondOrderStrategy
- DPPointerRow_ : BALL::FPTBondOrderStrategy
- DPRow_ : BALL::FPTBondOrderStrategy
- DPTable_() : BALL::FPTBondOrderStrategy::DPTable_
- drag_ : BALL::VIEW::SnapshotVisualisationDialog
- dragEnterEvent() : BALL::VIEW::DockWidget, BALL::VIEW::Scene
- DragLogView() : BALL::VIEW::DragLogView
- draw() : BALL::VIEW::GLDisplayList, BALL::VIEW::MeshBuffer
- draw_box : BALL::VIEW::GridVisualisation
- draw_DNA_as_ladder_ : BALL::VIEW::AddCartoonModel
- draw_ligand_ : BALL::DockProblem
- draw_ribbon_ : BALL::VIEW::AddCartoonModel
- drawBuffered() : BALL::VIEW::GLRenderer
- drawDNAAsLadderModel() : BALL::VIEW::AddCartoonModel
- drawed_mesh_ : BALL::VIEW::GLRenderer
- drawed_other_object_ : BALL::VIEW::GLRenderer
- drawFrame_() : BALL::VIEW::SDWidget
- drawing_mode_ : BALL::VIEW::GLRenderer, BALL::VIEW::Representation
- drawing_precision_ : BALL::VIEW::GLRenderer, BALL::VIEW::ModelProcessor, BALL::VIEW::Representation
- drawLine() : BALL::VIEW::Scene
- drawRiboseAtoms_() : BALL::VIEW::AddCartoonModel
- drawStrand_() : BALL::VIEW::AddCartoonModel
- dropEvent() : BALL::VIEW::DockWidget, BALL::VIEW::Scene
- DSN6File() : BALL::DSN6File
- dual_stereo_action_ : BALL::VIEW::Scene
- dual_stereo_different_display_action_ : BALL::VIEW::Scene
- DUAL_VIEW_DIFFERENT_DISPLAY_STEREO : BALL::VIEW::Renderer
- DUAL_VIEW_STEREO : BALL::VIEW::Renderer
- DUBNIUM : BALL::Element
- dummy() : BALL::Visitor< Host >
- dummy_chain_ : BALL::VIEW::AddBackboneModel, BALL::VIEW::ChainColorProcessor
- dummy_data_item_ : BALL::CIFFile::Datablock, BALL::CIFFile::SaveFrame
- dummy_indices_ : BALL::CIFFile::Datablock
- dummy_molecule_ : BALL::SMARTSPredicate, BALL::VIEW::MoleculeColorProcessor
- dummy_protein_ : BALL::VIEW::AddBackboneModel
- dummy_residue : BALL::VIEW::ResidueNameColorProcessor
- dummy_residue_ : BALL::VIEW::ResidueNumberColorProcessor
- dummy_saveframe_ : BALL::CIFFile::Datablock
- dummy_saveframes_ : BALL::CIFFile::Datablock
- dummy_ss_ : BALL::VIEW::AddBackboneModel
- dummySlot() : BALL::VIEW::Scene
- dump() : BALL::Atom::BondIteratorTraits, BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::CHPI::AromaticRing, BALL::CHPI::CHGroup, BALL::CHPISlick::AromaticRing, BALL::CHPISlick::CHGroup, BALL::Client, BALL::Composite, BALL::ConnectedToPredicate, BALL::Embeddable, BALL::ExpressionParser::SyntaxTree, BALL::ExpressionTree, BALL::Fragment, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::Kekuliser, BALL::LogStreamBuf, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Object, BALL::Options, BALL::Pair6_12RDFIntegrator, BALL::PairExpRDFIntegrator, BALL::PDBAtom, BALL::PiecewiseFunction, BALL::PiecewisePolynomial, BALL::PropertyManager, BALL::Protein, BALL::RadialDistributionFunction, BALL::RegularExpression, BALL::Residue, BALL::ResourceEntry, BALL::ResourceFile, BALL::RuleEvaluator, BALL::RuleProcessor, BALL::SecondaryStructure, BALL::Selectable, BALL::SmartsMatcher::RecStruct_, BALL::String, BALL::Substring, BALL::TAngle< T >, BALL::TBox3< T >, BALL::TCircle3< T >, BALL::Timer, BALL::TLine3< T >, BALL::TMatrix4x4< T >, BALL::TPlane3< T >, BALL::TQuaternion< T >, BALL::TSimpleBox3< T >, BALL::TSphere3< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::AddBackboneModel, BALL::VIEW::AddBallAndStickModel, BALL::VIEW::AddLineModel, BALL::VIEW::AddSurfaceModel, BALL::VIEW::AddVanDerWaalsModel, BALL::VIEW::AtomBondModelBaseProcessor, BALL::VIEW::Box, BALL::VIEW::Camera, BALL::VIEW::ColorExtension2, BALL::VIEW::ColorHSV, BALL::VIEW::ColorMap, BALL::VIEW::ColorProcessor, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue, BALL::VIEW::CompositeManager, BALL::VIEW::ConnectionObject, BALL::VIEW::Dataset, BALL::VIEW::Disc, BALL::VIEW::GeometricObject, BALL::VIEW::GLDisplayList, BALL::VIEW::GLRenderer, BALL::VIEW::Label, BALL::VIEW::LightSource, BALL::VIEW::Line, BALL::VIEW::MainControl, BALL::VIEW::Mesh, BALL::VIEW::ModelProcessor, BALL::VIEW::ModularWidget, BALL::VIEW::MultiColorExtension, BALL::VIEW::MultiLine, BALL::VIEW::Point, BALL::VIEW::PreferencesEntry, BALL::VIEW::PyWidget, BALL::VIEW::Representation, BALL::VIEW::RepresentationManager, BALL::VIEW::Scene, BALL::VIEW::ServerWidget, BALL::VIEW::SimpleBox, BALL::VIEW::Sphere, BALL::VIEW::Stage, BALL::VIEW::Tube, BALL::VIEW::TwoColoredLine, BALL::VIEW::TwoColoredTube, BALL::VIEW::Vertex2, BALL::VIEW::Vertex
- dumpTree() : BALL::SmartsParser
- dumpTreeRecursive_() : BALL::SmartsParser
- DUNBRACK : BALL::FlexDefinition
- duplicate() : BALL::VIEW::GeometricControl
- DUPLICATE_ATOM_NAMES : BALL::ResidueChecker
- duplicateKeyCheckEnabled() : BALL::INIFile
- duplicateProperty() : BALL::VIEW::PropEditorWidget
- Dy : BALL::Element
- dynamic_rule : BALL::MOL2File::SetStruct
- DYSPROSIUM : BALL::Element