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Here is a list of all class members with links to the classes they belong to:

### - c -

- C : BALL::Element, BALL::ShiftModel1D
- c : BALL::Constant, BALL::PDB::RecordCRYST1::UnitCell, BALL::PDB::Structure::UnitCellInfo, BALL::SortedPosition3
- C1 : BALL::PairExpInteractionEnergyProcessor::Default, BALL::PairExpInteractionEnergyProcessor::Option
- C1_ : BALL::PairExpInteractionEnergyProcessor, BALL::PairExpRDFIntegrator
- C2 : BALL::PairExpInteractionEnergyProcessor::Default, BALL::PairExpInteractionEnergyProcessor::Option
- C2_ : BALL::PairExpInteractionEnergyProcessor, BALL::PairExpRDFIntegrator
- C_BACKBONE : BALL::ShiftModel1D
- c_str() : BALL::String, BALL::Substring
- Ca : BALL::Element
- CADMIUM : BALL::Element
- CAESIUM : BALL::Element
- CAL_PER_JOULE : BALL::Constant
- calcConjugate_() : BALL::GeometricFit
- CALCIUM : BALL::Element
- calculate() : BALL::DockProblem, BALL::FermiBaseFunction, BALL::GeneticAlgorithm, BALL::GridAnalysis, BALL::LinearBaseFunction, BALL::LogP, BALL::ScoringBaseFunction, BALL::VIEW::FDPBDialog
- calculate_() : BALL::ConnectivityBase, BALL::Descriptor, BALL::PartialChargeBase, BALL::SimpleBase, BALL::SurfaceBase, BALL::VIEW::FDPBDialog
- calculateAbsoluteCoordinates() : BALL::VIEW::Stage
- calculateAromaticSystems_() : BALL::Kekuliser
- calculateBALLDescriptors() : BALL::QSAR::QSARData
- calculateBendEmpiricalForceConstant() : BALL::MMFF94StretchBend
- calculateBendEmpiricalReferenceAngle() : BALL::MMFF94StretchBend
- calculateCoefficientStdErrors() : BALL::QSAR::RegressionValidation
- calculateComplementaryBases_() : BALL::VIEW::AddCartoonModel
- calculateConstraintsScore() : BALL::ScoringFunction
- calculated_ : BALL::MMFF94VDWParameters
- calculateDefaultBijection() : BALL::StructureMapper
- calculateDielectricConstant() : BALL::AdvancedElectrostatic
- calculateDistances() : BALL::VIEW::AtomDistanceColorProcessor
- calculateDistanceScores_() : BALL::Kekuliser
- calculateEigenvectors() : BALL::QSAR::PCRModel
- calculateEnergy() : BALL::GeneralizedBornModel
- calculateEuclDistanceMatrix() : BALL::QSAR::ALLModel
- calculateFactors() : BALL::MicroCanonicalMD
- calculateFactors_() : BALL::CanonicalMD
- calculateFDPB() : BALL::VIEW::MolecularStructure
- CalculateFDPBThread() : BALL::VIEW::CalculateFDPBThread, BALL::VIEW::FDPBDialog
- calculateForceFieldEnergy() : BALL::VIEW::MolecularStructure
- calculateFragmentBijection() : BALL::StructureMapper
- calculateGeometricalCenter() : BALL::ScoringFunction
- calculateGridScore() : BALL::GridBasedScoring
- calculateGuidePoints_() : BALL::VIEW::AddBackboneModel
- calculateHBonds() : BALL::VIEW::MolecularStructure
- calculateHeuristic_() : BALL::MMFF94Torsion
- calculateIncludedVertices_() : BALL::VIEW::ModifyRepresentationDialog
- calculateKernelMatrix() : BALL::QSAR::Kernel
- calculateKernelMatrix1() : BALL::QSAR::Kernel
- calculateKernelMatrix2() : BALL::QSAR::Kernel
- calculateKernelMatrix3() : BALL::QSAR::Kernel
- calculateKernelMatrix4() : BALL::QSAR::Kernel
- calculateKernelVector() : BALL::QSAR::Kernel
- calculateKineticEnergy_() : BALL::SnapShotManager
- calculateLinePoints_() : BALL::VIEW::FieldLineCreator
- calculateMatrices_() : BALL::CrystalInfo
- calculateMean() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- calculateMinSpacing() : BALL::HashGrid3< Item >
- calculateModelParts() : BALL::VIEW::AddBackboneModel, BALL::VIEW::AddCartoonModel
- calculateMoleculeRadius() : BALL::ScoringFunction
- calculateOffsets() : BALL::QSAR::KernelModel, BALL::QSAR::LinearModel, BALL::QSAR::NonLinearModel, BALL::QSAR::RegressionModel
- calculatePEOE() : BALL::PartialChargeProcessor
- calculatePotential() : BALL::GeneralizedBornModel
- calculateProbabilities() : BALL::QSAR::BayesModel, BALL::QSAR::NBModel, BALL::QSAR::SNBModel
- calculateQuality() : BALL::Rescoring
- calculateRamachandranPlot() : BALL::VIEW::MolecularStructure
- calculateRankCorrelation() : BALL::QSAR::Statistics
- calculateReactionFieldEnergy() : BALL::FDPB
- calculateRelativeCoordinates() : BALL::VIEW::Stage
- calculateRibbonEllipse_() : BALL::VIEW::AddBackboneModel
- calculateRibbonPoints_() : BALL::VIEW::AddBackboneModel
- calculateRMSD() : BALL::AtomBijection, BALL::DockingAlgorithm, BALL::StructureMapper, BALL::VIEW::MolecularStructure
- calculateSBTIJK() : BALL::MMFF94StretchBend
- calculateScore() : BALL::Constraint, BALL::PharmacophoreConstraint, BALL::ReferenceArea, BALL::ScoringFunction
- calculateSD() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- calculateSecondaryStructure() : BALL::VIEW::MolecularStructure
- calculateSelectionMedoid() : BALL::BinaryFingerprintMethods
- calculateSimilarity() : BALL::MolecularSimilarity
- calculateSolvationEnergy() : BALL::GeneralizedBornModel
- calculateSSSR() : BALL::RingPerceptionProcessor
- calculateStaticLigandFragmentEnergy() : BALL::ScoringFunction
- calculateStdErr() : BALL::QSAR::GPModel, BALL::QSAR::Model
- calculateStretchConstant() : BALL::MMFF94StretchBend
- calculateStretchR0() : BALL::MMFF94StretchBend
- calculateTopologicalDescriptors() : BALL::QSAR::QSARData
- calculateTransformation() : BALL::StructureMapper
- calculateTubePoints_() : BALL::VIEW::AddBackboneModel
- calculateVectors_() : BALL::VIEW::Camera
- calculateWeightedKernelMatrix() : BALL::QSAR::Kernel
- calculateWeights() : BALL::QSAR::ALLModel, BALL::QSAR::KNNModel
- calculateXX() : BALL::QSAR::ALLModel
- calculateXY() : BALL::QSAR::ALLModel
- CALCULATION__COULOMB : BALL::PolarSolvation
- CALCULATION__EEF1 : BALL::PolarSolvation
- CALCULATION__FRESNO : BALL::PolarSolvation
- CALCULATION__FULL_CYCLE : BALL::PolarSolvation
- CALCULATION__FULL_CYCLE_FOCUSED : BALL::PolarSolvation
- CALCULATION__FULL_LJ_POTENTIAL : BALL::VanDerWaalsSlick
- CALCULATION__FULL_SLICK : BALL::PolarSolvation
- CALCULATION__NONE : BALL::NonpolarSolvation
- CALCULATION__PCM : BALL::NonpolarSolvation
- CALCULATION__SOFTENED_LJ_POTENTIAL_LOG : BALL::VanDerWaalsSlick
- CALCULATION__SOFTENED_LJ_POTENTIAL_SIMPLE : BALL::VanDerWaalsSlick
- CALCULATION__UHLIG : BALL::NonpolarSolvation
- CALCULATION__VDW_INTERACTION : BALL::NonpolarSolvation
- CALCULATION__VDW_SOLVENT : BALL::NonpolarSolvation
- CalculationMethod : BALL::NonpolarSolvation, BALL::PolarSolvation, BALL::VanDerWaalsSlick
- CALIFORNIUM : BALL::Element
- call_time_map_ : BALL::SMARTSPredicate
- caller_ : BALL::SimpleDownloaderHelper::BasicHelper
- Camera() : BALL::VIEW::Camera
- camera : BALL::VIEW::SetCamera
- camera_ : BALL::VIEW::Renderer, BALL::VIEW::RenderSetup, BALL::VIEW::Stage
- camera_offset_ : BALL::VIEW::Renderer, BALL::VIEW::RenderSetup
- canBeCopied() : BALL::TriangulatedSurface
- cancel_ : BALL::VIEW::SnapshotVisualisationDialog
- cancel_animation_action_ : BALL::VIEW::Scene
- cancelPressed() : BALL::VIEW::DockDialog, BALL::VIEW::SnapshotVisualisationDialog
- canHandle() : BALL::PluginHandler, BALL::VIEW::DatasetControl, BALL::VIEW::InputDevPluginHandler, BALL::VIEW::ModularWidget, BALL::VIEW::ModularWidgetPluginHandler, BALL::VIEW::MolecularFileDialog, BALL::VIEW::PluginDialog, BALL::VIEW::PyWidget, BALL::VIEW::TestFramework
- CannotWrite() : BALL::File::CannotWrite
- CanonicalMD() : BALL::CanonicalMD
- canonizePath() : BALL::FileSystem
- canUseMeshShortcut_() : BALL::VIEW::ChainColorProcessor, BALL::VIEW::ColorProcessor, BALL::VIEW::CustomColorProcessor, BALL::VIEW::MoleculeColorProcessor, BALL::VIEW::ResidueNameColorProcessor, BALL::VIEW::ResidueNumberColorProcessor
- cap_ : BALL::VIEW::ClippingPlane
- capacity() : BALL::PDBRecords, BALL::String
- capping_color_ : BALL::VIEW::ClippingPlane
- cappingEnabled() : BALL::VIEW::ClippingPlane
- captureCamera() : BALL::VIEW::Scene
- CARBON : BALL::Element
- CARBONEUM : BALL::Element
- carbonyl_influences_amide_field_ : BALL::EFShiftProcessor
- care_for_SS_ : BALL::VIEW::AddBackboneModel
- carlsonEllipticalIntegral1_() : BALL::JohnsonBoveyShiftProcessor
- carlsonEllipticalIntegral2_() : BALL::JohnsonBoveyShiftProcessor
- cart2frac_ : BALL::CrystalInfo
- cartoonDNABaseRadiusChanged() : BALL::VIEW::ModelSettingsDialog
- cartoonDNAHelixRadiusChanged() : BALL::VIEW::ModelSettingsDialog
- cartoonDNALadderRadiusChanged() : BALL::VIEW::ModelSettingsDialog
- cartoonHelixRadiusChanged() : BALL::VIEW::ModelSettingsDialog
- cartoonStrandArrowWidthChanged() : BALL::VIEW::ModelSettingsDialog
- cartoonStrandHeightChanged() : BALL::VIEW::ModelSettingsDialog
- cartoonStrandWidthChanged() : BALL::VIEW::ModelSettingsDialog
- cartoonTubeRadiusChanged() : BALL::VIEW::ModelSettingsDialog
- CASE_INSENSITIVE : BALL::String
- CASE_SENSITIVE : BALL::String
- category : BALL::CIFFile::SaveFrame, BALL::ParamFile::ParameterDescription
- cation : BALL::MMFF94AtomTyper::AromaticType
- cation_atoms_ : BALL::MMFF94AtomTyper
- cbegin() : BALL::String
- CCP4File() : BALL::CCP4File
- CCW_AL : BALL::SmartsParser
- CCW_AL_OR_UNSPECIFIED : BALL::SmartsParser
- CCW_DEFAULT : BALL::SmartsParser
- CCW_DEFAULT_OR_UNSPECIFIED : BALL::SmartsParser
- CCW_OH : BALL::SmartsParser
- CCW_OH_OR_UNSPECIFIED : BALL::SmartsParser
- CCW_SP : BALL::SmartsParser
- CCW_SP_OR_UNSPECIFIED : BALL::SmartsParser
- CCW_TB : BALL::SmartsParser
- CCW_TB_OR_UNSPECIFIED : BALL::SmartsParser
- CCW_TH : BALL::SmartsParser
- CCW_TH_OR_UNSPECIFIED : BALL::SmartsParser
- Cd : BALL::Element
- Ce : BALL::Element
- cel_texture_ : BALL::VIEW::GLRenderer
- cell_dimension_ : BALL::CCP4File
- cell_dimensions_ : BALL::CrystalInfo
- cell_scaling_ : BALL::DSN6File
- CellType : BALL::CrystalGenerator
- cend() : BALL::String
- center : BALL::PoseClustering::ClusterProperties, BALL::StaticLigandFragment
- center_ : BALL::GridAnalysis, BALL::RSFace, BALL::VIEW::LabelModel
- CENTER_CAMERA : BALL::VIEW::CompositeMessage
- center_camera_action_ : BALL::VIEW::MolecularControl
- center_data : BALL::QSAR::InputConfiguration
- center_of_torus_ : BALL::RSEdge
- center_processor_ : BALL::CrystalGenerator, BALL::VIEW::LabelModel
- center_y : BALL::QSAR::InputConfiguration
- centerCamera() : BALL::VIEW::MolecularControl, BALL::VIEW::MolecularStructure
- centerData() : BALL::QSAR::QSARData
- centering() : BALL::QSAR::Statistics
- central_moments : BALL::Spectrum< DataT, PeakT, PositionT >
- CERIUM : BALL::Element
- certificateError() : BALL::VIEW::HTMLPage
- ces_parsers_ : BALL::GAFFTypeProcessor
- CESelementConnectionPredicate() : BALL::GAFFCESParser::CESelementConnectionPredicate
- CESelementPredicate() : BALL::GAFFCESParser::CESelementPredicate
- CESPredicate() : BALL::GAFFCESParser::CESPredicate
- cesstring_ : BALL::GAFFCESParser
- CESwildcards : BALL::GAFFCESParser::CESPredicate
- CESwildcardsConnectionPredicate() : BALL::GAFFCESParser::CESwildcardsConnectionPredicate
- CESwildcardsPredicate() : BALL::GAFFCESParser::CESwildcardsPredicate
- Cf : BALL::Element
- Chain() : BALL::Chain
- chain : BALL::MOL2File::SubstructureStruct, BALL::PDB::Structure::AtomEntry
- chain_ : BALL::NMRStarFile::BALLToBMRBMapper
- chain_ID : BALL::PDB::RecordDBREF, BALL::PDB::RecordSEQRES, BALL::PDB::Residue
- chain_id : BALL::PDB::AdditionalAtomInfo
- chain_ID_ : BALL::PDBFile
- chain_residue_names : BALL::PDB::Structure
- ChainColorProcessor() : BALL::VIEW::ChainColorProcessor
- ChainIteratorTraits() : BALL::ChainIteratorTraits
- chainname_ : BALL::Peptides::PeptideBuilder
- chains_ : BALL::SDGenerator
- change_charge_ : BALL::VIEW::EditMode
- changeAllXToY_() : BALL::SecondaryStructureProcessor
- changeAtomElementTriggered_() : BALL::VIEW::EditMode
- changeBondOrder() : BALL::VIEW::Scene
- changeBondOrder_() : BALL::VIEW::EditMode
- CHANGED__TYPE : BALL::VIEW::EditOperation
- changed_color_processor_ : BALL::VIEW::Representation
- CHANGED_COMPOSITE : BALL::VIEW::CompositeMessage
- CHANGED_COMPOSITE_HIERARCHY : BALL::VIEW::CompositeMessage
- changed_selection_color_ : BALL::VIEW::DisplayProperties
- changedEditThreshold() : BALL::VIEW::RaytraceableContourSurfaceDialog
- changedNAMode_() : BALL::VIEW::ModelSettingsDialog
- changedRangeMax() : BALL::VIEW::RaytraceableContourSurfaceDialog
- changedRangeMin() : BALL::VIEW::RaytraceableContourSurfaceDialog
- changedRangeSteps() : BALL::VIEW::RaytraceableContourSurfaceDialog
- changeDrawingMode_() : BALL::VIEW::ModifyRepresentationDialog
- changeDrawingModeTransparencyChanged() : BALL::VIEW::ModifyRepresentationDialog
- changedSliderThreshold() : BALL::VIEW::RaytraceableContourSurfaceDialog
- changeLock() : BALL::VIEW::ServerWidget
- changeMode_() : BALL::VIEW::EditSingleShortcut
- changeProteinOrientation_() : BALL::GeometricFit
- changeRotamer_() : BALL::VIEW::MolecularControl
- changeShortcut() : BALL::VIEW::ShortcutRegistry
- changeToUserHomeDir() : BALL::Directory
- ChannelFormat() : BALL::VIEW::ChannelFormat
- ChannelID : BALL::VIEW::ChannelFormat
- ChannelType : BALL::VIEW::ChannelFormat
- char_count : BALL::ExpressionParser::State, BALL::SmartsParser::State, BALL::SmilesParser::State
- CHARACTER_CLASS__ASCII_ALPHA : BALL::String
- CHARACTER_CLASS__ASCII_ALPHANUMERIC : BALL::String
- CHARACTER_CLASS__ASCII_FLOAT : BALL::String
- CHARACTER_CLASS__ASCII_LOWER : BALL::String
- CHARACTER_CLASS__ASCII_NUMERIC : BALL::String
- CHARACTER_CLASS__ASCII_UPPER : BALL::String
- CHARACTER_CLASS__QUOTES : BALL::String
- CHARACTER_CLASS__WHITESPACE : BALL::String
- CharBits : BALL::BitVector
- CHARGE : BALL::SmartsParser::SPAtom
- charge : BALL::MOL2File::AtomStruct, BALL::MOLFile::AtomStruct, BALL::PDB::RecordANISOU, BALL::PDB::RecordATOM, BALL::PDB::RecordHETATM, BALL::PDB::RecordSIGATM, BALL::PDB::RecordSIGUIJ
- charge_ : BALL::Atom
- CHARGE_DISTRIBUTION : BALL::FDPB::Default, BALL::FDPB::Option
- charge_factor_ : BALL::EFShiftProcessor
- charge_map_ : BALL::EFShiftProcessor
- charge_menu_ : BALL::VIEW::EditMode
- charge_processor_ : BALL::MMFF94, BALL::VIEW::FDPBDialog
- charge_rule_processor_ : BALL::VIEW::FDPBDialog
- charge_type : BALL::MOL2File::MoleculeStruct
- ChargeRuleProcessor() : BALL::ChargeRuleProcessor
- charges_ : BALL::ElectrostaticPotentialCalculator, BALL::HMOFile, BALL::Templates
- charmm_extra_block_A_ : BALL::DCDFile
- charmm_extra_block_B_ : BALL::DCDFile
- CHARMM_FF : BALL::VIEW::MolecularStructure
- CharmmBend() : BALL::CharmmBend
- CharmmConfigurationDialog() : BALL::VIEW::CharmmConfigurationDialog
- CharmmEEF1() : BALL::CharmmEEF1
- CharmmFF() : BALL::CharmmFF
- CharmmImproperTorsion() : BALL::CharmmImproperTorsion
- CharmmNonBonded() : BALL::CharmmNonBonded
- CharmmStretch() : BALL::CharmmStretch
- CharmmTorsion() : BALL::CharmmTorsion
- check() : BALL::Result::ResultData, BALL::SolventExcludedSurface
- CHECK_AFTER_ITERATIONS : BALL::FDPB::Default, BALL::FDPB::Option
- check_applicability_ : BALL::Rescoring
- check_duplicate_keys_ : BALL::INIFile
- CHECK_RESIDUE : BALL::VIEW::MolecularTaskMessage
- checkable_ : BALL::VIEW::GenericControl
- checkActivityIDs() : BALL::QSAR::QSARData
- checkApplyButton_() : BALL::VIEW::GridVisualizationDialog, BALL::VIEW::ModifyRepresentationDialog
- checkAtomPositions() : BALL::ResidueChecker
- checkAtomType() : BALL::MMFF94
- checkCharge() : BALL::ResidueChecker
- checkCompatibility() : BALL::FlexibleMolecule
- checkCompleteness() : BALL::ResidueChecker
- checkDrawingPrecision_() : BALL::VIEW::DisplayProperties
- checkForAtomOverlaps() : BALL::ScoringFunction
- checkforDiscreteY() : BALL::QSAR::QSARData
- checkForIncompatibleDrivers_() : BALL::VIEW::HTMLViewDock
- checkGAFFProperties() : BALL::GAFFCESParser::APSMatcher
- checkGL() : BALL::VIEW::GLRenderWindow
- checkHeader() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkID() : BALL::Conformation
- checkInclude_() : BALL::VIEW::ModifyRepresentationDialog
- checkLoop() : BALL::VIEW::SnapshotVisualisationDialog
- checkMenu() : BALL::VIEW::DatasetControl, BALL::VIEW::DatasetController, BALL::VIEW::DisplayProperties, BALL::VIEW::DockingController, BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile, BALL::VIEW::FileObserver, BALL::VIEW::GeometricControl, BALL::VIEW::LabelDialog, BALL::VIEW::ModularWidget, BALL::VIEW::MolecularControl, BALL::VIEW::MolecularFileDialog, BALL::VIEW::MolecularStructure, BALL::VIEW::PubChemDialog, BALL::VIEW::PyWidget, BALL::VIEW::Scene, BALL::VIEW::TestFramework, BALL::VIEW::UndoManagerDialog
- checkMenus() : BALL::VIEW::MainControl
- checkName() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkNoLoop() : BALL::VIEW::SnapshotVisualisationDialog
- checkObjectHeader() : BALL::PersistenceManager
- checkObjectPointerArrayHeader() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkObjectPointerArrayTrailer() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkObjectPointerHeader() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkObjectReferenceHeader() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkObjectTrailer() : BALL::PersistenceManager
- checkOverlap_() : BALL::SDGenerator
- checkPrimitiveHeader() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkPrimitiveTrailer() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkResidue() : BALL::VIEW::MolecularControl, BALL::VIEW::MolecularStructure
- checkRock() : BALL::VIEW::SnapshotVisualisationDialog
- checkStorableHeader() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkStorableTrailer() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkStreamHeader() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkStreamTrailer() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- checkTemplate() : BALL::ResidueChecker
- checkTrailer() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- chemical_environment : BALL::GAFFTypeProcessor::TypeDefinition
- chemical_formula : BALL::PDB::RecordFORMUL
- chemical_name : BALL::PDB::RecordHETNAM
- chemical_units : BALL::NMRStarFile::MolecularSystem
- ChemicalUnit() : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
- CHGroup() : BALL::CHPI::CHGroup, BALL::CHPISlick::CHGroup
- chi1 : BALL::Rotamer
- chi2 : BALL::Rotamer
- chi3 : BALL::Rotamer
- chi4 : BALL::Rotamer
- CHI__CHI : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- CHI__DISCRETE : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- CHI__REAL : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- ChildCompositeConstIterator : BALL::Composite
- ChildCompositeConstReverseIterator : BALL::Composite
- ChildCompositeIterator : BALL::Composite
- ChildCompositeIteratorTraits : BALL::Composite, BALL::Composite::ChildCompositeIteratorTraits
- ChildCompositeReverseIterator : BALL::Composite
- children : BALL::ExpressionParser::SyntaxTree, BALL::GAFFCESParser::CESPredicate
- children_ : BALL::ExpressionTree
- ChildrenIterator : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- chiral : BALL::MOLFile::CountsStruct
- CHIRAL_CLASS_UNSPECIFIED : BALL::SmartsParser
- chiral_class_value : BALL::SmartsParser::SPAtom::PropertyValue
- ChiralClass : BALL::SmartsParser, BALL::SmilesParser
- ChiralDef : BALL::SmilesParser
- CHIRALITY : BALL::SmartsParser::SPAtom
- chirality_ : BALL::SmilesParser::SPAtom
- CHLORINE : BALL::Element
- CHOOSE_FF : BALL::VIEW::MainControl
- CHOOSE_MODEL : BALL::PDBFile::Default, BALL::PDBFile::Option
- chooseAmberFF() : BALL::VIEW::MolecularStructure
- chooseCharmmFF() : BALL::VIEW::MolecularStructure
- chooseColor() : BALL::VIEW::ColorButton, BALL::VIEW::ContourSurfaceDialog
- chooseDCDFile() : BALL::VIEW::MolecularDynamicsDialog
- chooseFile() : BALL::VIEW::FileObserver
- chooseForceField() : BALL::VIEW::MolecularStructure
- chooseMMFF94() : BALL::VIEW::MolecularStructure
- chooseName_() : BALL::VIEW::PropertyEditor
- choosePressed() : BALL::VIEW::ModifyRepresentationDialog
- chooseSolventFile() : BALL::VIEW::AmberConfigurationDialog, BALL::VIEW::CharmmConfigurationDialog, BALL::VIEW::MMFF94ConfigurationDialog
- CHPI() : BALL::CHPI, BALL::SLICKEnergy::Default, BALL::SLICKEnergy::Option, BALL::SLICKScore::Default, BALL::SLICKScore::Option
- CHPISlick() : BALL::CHPISlick
- CHROMIUM : BALL::Element
- CHX_ANGLE_LOWER : BALL::CHPI::Default, BALL::CHPI::Option, BALL::CHPISlick::Default, BALL::CHPISlick::Option
- ci_ptr_ : BALL::CrystalGenerator
- CIFFile() : BALL::CIFFile
- circle0_ : BALL::RSEdge
- circle1_ : BALL::RSEdge
- circle_ : BALL::SASEdge, BALL::SESEdge
- Cl : BALL::Element
- CLASH_FACTOR : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- class_ : BALL::VIEW::PyWidget
- class_names_ : BALL::QSAR::QSARData
- classes_to_files_ : BALL::VIEW::HelpViewer
- classification : BALL::PDB::RecordHEADER
- ClassificationModel() : BALL::QSAR::ClassificationModel
- ClassificationValidation : BALL::QSAR::ClassificationModel, BALL::QSAR::ClassificationValidation, BALL::QSAR::Model, BALL::QSAR::QSARData
- CLAVERIE_FILENAME : BALL::PairExpInteractionEnergyProcessor::Default, BALL::PairExpInteractionEnergyProcessor::Option
- ClaverieParameter() : BALL::ClaverieParameter
- clean() : BALL::ReducedSurface, BALL::SolventExcludedSurface
- cleanPool() : BALL::GeneticAlgorithm
- cleanUp() : BALL::GeneticAlgorithm
- clear() : BALL::AmberFF, BALL::AmberNonBonded, BALL::AmiraMeshFile, BALL::AromaticRingStacking, BALL::AssignBondOrderProcessor, BALL::AStarBondOrderStrategy, BALL::Atom, BALL::AtomContainer, BALL::AtomTypes, BALL::Bit, BALL::BitVector, BALL::Bond, BALL::BondOrderAssignment, BALL::BondOrderAssignmentStrategy, BALL::BranchAndBoundBondOrderStrategy, BALL::BuriedPolar, BALL::CCP4File, BALL::CharmmEEF1, BALL::CharmmFF, BALL::CharmmNonBonded, BALL::CHPI, BALL::CHPISlick, BALL::CIFFile::Datablock, BALL::CIFFile::Item, BALL::CIFFile::SaveFrame, BALL::ClaverieParameter, BALL::Client, BALL::ComposedEnergyProcessor, BALL::Composite, BALL::ConnectedComponentsProcessor, BALL::ConnectedToPredicate, BALL::CosineTorsion, BALL::DCDFile, BALL::Directory, BALL::DisulfidBondProcessor, BALL::DSN6File, BALL::Element, BALL::EnergyProcessor, BALL::Expression, BALL::ExpressionParser::SyntaxTree, BALL::ExpressionPredicate, BALL::ExpressionTree, BALL::File, BALL::ForceField, BALL::ForceFieldParameters, BALL::FPTBondOrderStrategy, BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_, BALL::GAFFCESParser::CESPredicate, BALL::GeneralizedBornModel, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::HMOFile, BALL::HydrogenBond, BALL::HydrogenBondSlick, BALL::ILPBondOrderStrategy, BALL::INIFile, BALL::Kekuliser, BALL::KGreedyBondOrderStrategy, BALL::LennardJones, BALL::LineBasedFile, BALL::Lipophilic, BALL::LogStream, BALL::MMFF94, BALL::MMFF94AtomTypeEquivalences, BALL::MMFF94BendParameters, BALL::MMFF94ChargeProcessor, BALL::MMFF94ESParameters, BALL::MMFF94NonBonded, BALL::MMFF94ParametersBase, BALL::MMFF94PlaneParameters, BALL::MMFF94StretchBendParameters, BALL::MMFF94StretchParameters, BALL::MMFF94TorsionParameters, BALL::MMFF94VDWParameters, BALL::MolecularInformation, BALL::MolecularInteractions, BALL::MoleculeObjectCreator, BALL::MOPACOutputFile, BALL::NamedProperty, BALL::NMRStarFile::BALLToBMRBMapper, BALL::NMRStarFile, BALL::NMRStarFile::EntryInformation, BALL::NMRStarFile::MolecularSystem::ChemicalUnit, BALL::NMRStarFile::MolecularSystem, BALL::NMRStarFile::MolecularSystem::RelatedDB, BALL::NMRStarFile::MonomericPolymer, BALL::NMRStarFile::MonomericPolymer::HomologDB, BALL::NMRStarFile::Sample, BALL::NMRStarFile::Sample::Component, BALL::NonpolarSolvation, BALL::NucleicAcid, BALL::Nucleotide, BALL::Object, BALL::ObjectCreator, BALL::Options, BALL::Pair6_12InteractionEnergyProcessor, BALL::Pair6_12RDFIntegrator, BALL::PairExpInteractionEnergyProcessor, BALL::PairExpRDFIntegrator, BALL::Parameters, BALL::ParameterSection, BALL::PartialBondOrderAssignment, BALL::PCMCavFreeEnergyProcessor, BALL::PDB::BookKeeping, BALL::PDB::RecordCON061, BALL::PDB::RecordCON062, BALL::PDB::RecordCON063, BALL::PDB::RecordCON064, BALL::PDB::RecordCON06, BALL::PDB::RecordCONECT, BALL::PDB::RecordHELIX, BALL::PDB::RecordMASTER, BALL::PDB::RecordSEQRES, BALL::PDB::RecordSHEET, BALL::PDB::RecordSSBOND, BALL::PDB::RecordTURN, BALL::PDB::Residue, BALL::PDB::Structure, BALL::PDBAtom, BALL::PDBFile, BALL::PDBInfo, BALL::PDBRecords, BALL::PeriodicBoundary, BALL::PiecewiseFunction, BALL::PiecewisePolynomial, BALL::PierottiCavFreeEnergyProcessor, BALL::PLP, BALL::Polarity, BALL::PolarSolvation, BALL::Potential1210, BALL::PreciseTime, BALL::PropertyManager, BALL::Protein, BALL::PTE_, BALL::QuadraticAngleBend, BALL::QuadraticBondStretch, BALL::QuadraticImproperTorsion, BALL::Quadruple< T1, T2, T3, T4 >, BALL::RadialDistributionFunction, BALL::RDFIntegrator, BALL::RDFParameter, BALL::RDFSection, BALL::ReducedSurface, BALL::RegularExpression, BALL::ReissCavFreeEnergyProcessor, BALL::Residue, BALL::ResidueTorsions, BALL::ResourceEntry, BALL::ResourceFile, BALL::Result, BALL::RingAnalyser, BALL::RombergIntegrator< Function, DataType >, BALL::RotamerLibrary, BALL::RuleEvaluator, BALL::RuleProcessor, BALL::ScoringComponent, BALL::ScoringFunction, BALL::SDGenerator, BALL::SecondaryStructure, BALL::Selectable, BALL::Selector, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::ShiftModel, BALL::ShiftModule, BALL::SideChainPlacementProcessor, BALL::SLICKEnergy, BALL::SLICKScore, BALL::SmartsMatcher::RecStruct_, BALL::SmartsMatcher::RecStructCore_, BALL::SmartsParser, BALL::SnapShot, BALL::SnapShotManager, BALL::SolventAccessibleSurface, BALL::SolventDescriptor, BALL::SolventExcludedSurface, BALL::SolventParameter, BALL::SpaceGroupParameters, BALL::Spectrum< DataT, PeakT, PositionT >, BALL::String, BALL::Substring, BALL::TAngle< T >, BALL::TBox3< T >, BALL::TCircle3< T >, BALL::TContour< T >, BALL::TContourLine< T >, BALL::TContourSurface< T >, BALL::Templates, BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >, BALL::Timer, BALL::TimeStamp, BALL::TLine3< T >, BALL::TMatrix4x4< T >, BALL::TPlane3< T >, BALL::TQuaternion< T >, BALL::TrajectoryFile, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::TriangulatedSurface, BALL::Triple< T1, T2, T3 >, BALL::TRRFile, BALL::TSimpleBox3< T >, BALL::TSphere3< T >, BALL::TSurface< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::UhligCavFreeEnergyProcessor, BALL::VanDerWaalsSlick, BALL::VIEW::AddBackboneModel, BALL::VIEW::AddBallAndStickModel, BALL::VIEW::AddSurfaceModel, BALL::VIEW::AtomBondModelBaseProcessor, BALL::VIEW::Box, BALL::VIEW::Camera, BALL::VIEW::ClippingPlane, BALL::VIEW::ColorExtension2, BALL::VIEW::ColorHSV, BALL::VIEW::ColorProcessor, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue, BALL::VIEW::CompositeManager, BALL::VIEW::ConnectionObject, BALL::VIEW::Dataset, BALL::VIEW::Disc, BALL::VIEW::GeometricControl, BALL::VIEW::GeometricObject, BALL::VIEW::GLDisplayList, BALL::VIEW::GLRenderer, BALL::VIEW::HBondModelProcessor, BALL::VIEW::Label, BALL::VIEW::Line, BALL::VIEW::MainControl, BALL::VIEW::Mesh, BALL::VIEW::MeshBuffer, BALL::VIEW::ModelProcessor, BALL::VIEW::ModularWidget, BALL::VIEW::MultiColorExtension, BALL::VIEW::MultiLine, BALL::VIEW::Point, BALL::VIEW::POVRenderer, BALL::VIEW::PyWidget, BALL::VIEW::Renderer, BALL::VIEW::Representation, BALL::VIEW::RepresentationManager, BALL::VIEW::Scene, BALL::VIEW::SDWidget, BALL::VIEW::ServerWidget, BALL::VIEW::ShortcutRegistry, BALL::VIEW::SimpleBox, BALL::VIEW::Sphere, BALL::VIEW::Stage, BALL::VIEW::STLRenderer, BALL::VIEW::Tube, BALL::VIEW::TwoColoredLine, BALL::VIEW::TwoColoredTube, BALL::VIEW::Vertex2, BALL::VIEW::Vertex, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- clear_() : BALL::MOL2File, BALL::PoseClustering, BALL::VIEW::AddBackboneModel
- clear_animation_action_ : BALL::VIEW::Scene
- clear_selection_action_ : BALL::VIEW::MainControl
- clearAtomGrid() : BALL::VIEW::ColorProcessor
- clearBonds() : BALL::GAMESSLogFile
- clearBuffer() : BALL::SnapShotManager, BALL::VIEW::MeshBuffer
- clearClipboard() : BALL::VIEW::MolecularControl
- clearComposites() : BALL::VIEW::AddSurfaceModel, BALL::VIEW::AtomBondModelBaseProcessor, BALL::VIEW::ModelProcessor
- clearConformations() : BALL::FlexibleMolecule
- clearData() : BALL::ScoreGridSet, BALL::VIEW::MainControl
- clearEntries() : BALL::VIEW::AssignBondOrderResultsDialog, BALL::VIEW::PubChemDialog
- clearFields_() : BALL::VIEW::LightSettings
- clearGeometricObjects() : BALL::VIEW::Representation
- clearHistory_() : BALL::VIEW::PyWidget
- clearKeySequences() : BALL::VIEW::ShortcutRegistry
- clearLastPtr() : BALL::AutoDeletable
- clearLightSources() : BALL::VIEW::Stage
- clearMutations() : BALL::DNAMutator, BALL::Mutator
- clearNames_() : BALL::VIEW::GLRenderer
- clearNormals() : BALL::TSurface< T >
- clearParameters() : BALL::CIFFile, BALL::GAMESSDatFile
- clearProperty() : BALL::PropertyManager
- clearRecordedAnimation() : BALL::VIEW::Scene
- clearScript() : BALL::VIEW::PyWidget
- clearSelection() : BALL::VIEW::MainControl
- clearSelector() : BALL::VIEW::MolecularControl
- ClearShiftProcessor() : BALL::ClearShiftProcessor
- clearStartupScript() : BALL::VIEW::PythonSettings
- clearStatusBarText_() : BALL::VIEW::MainControl
- clearSticks() : BALL::Spectrum< DataT, PeakT, PositionT >
- clearStoredInteractions_() : BALL::ScoringFunction
- clearTriangles() : BALL::TSurface< T >
- clearUsedAtoms_() : BALL::VIEW::AtomBondModelBaseProcessor
- clearVertexBuffersFor() : BALL::VIEW::GLRenderer
- clearVertices() : BALL::TSurface< T >
- clicked() : BALL::VIEW::FDPBDialog
- Client() : BALL::Client
- clinkInner_() : BALL::PoseClustering
- clipboard_id_ : BALL::VIEW::MolecularControl
- clipping_plane_ : BALL::VIEW::ClippingDialog
- clipping_plane_context_menu_ : BALL::VIEW::GeometricControl
- clipping_planes_ : BALL::VIEW::POVRenderer, BALL::VIEW::RepresentationManager, BALL::VIEW::XML3DRenderer
- ClippingDialog() : BALL::VIEW::ClippingDialog
- ClippingPlane() : BALL::VIEW::ClippingPlane
- clone() : BALL::Composite, BALL::DoubleGene, BALL::GenericGene, BALL::QuaternionGene, BALL::VIEW::BoolEditorWidget, BALL::VIEW::DoubleEditorWidget, BALL::VIEW::FloatEditorWidget, BALL::VIEW::IntEditorWidget, BALL::VIEW::PDBInfoEditorWidget, BALL::VIEW::PropDeleteWidget, BALL::VIEW::PropEditorWidget, BALL::VIEW::StringEditorWidget, BALL::VIEW::UIntEditorWidget
- cloneBond() : BALL::Atom
- close() : BALL::DockResultFile, BALL::File, BALL::GenericMolFile, BALL::ParamFile, BALL::ResourceFile
- close_pressed() : BALL::VIEW::PeptideDialog, BALL::VIEW::UndoManagerDialog
- closeClicked() : BALL::VIEW::DockResultDialog
- closeEvent() : BALL::VIEW::MainControl, BALL::VIEW::SnapshotVisualisationDialog
- CLUSTER_METHOD : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- cluster_representatives_ : BALL::PoseClustering
- cluster_scores_ : BALL::PoseClustering
- cluster_tree_ : BALL::PoseClustering, BALL::PoseClustering::ClusterTreeNodeComparator, BALL::PoseClustering::ClusterTreeWriter_
- ClusterProperties() : BALL::PoseClustering::ClusterProperties
- clusterRings_() : BALL::RingAnalyser
- clusters_ : BALL::PoseClustering
- ClusterTree : BALL::PoseClustering
- ClusterTreeNode : BALL::PoseClustering
- ClusterTreeNodeComparator() : BALL::PoseClustering::ClusterTreeNodeComparator
- ClusterTreeWriter_() : BALL::PoseClustering::ClusterTreeWriter_
- Cm : BALL::Element
- cm_ : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >, BALL::VIEW::ColorByGridProcessor
- Co : BALL::Element
- coarsePenalty() : BALL::PartialBondOrderAssignment
- COBALT : BALL::Element
- code_ : BALL::PDBFile
- coefficient_ : BALL::ScoringComponent
- coefficients_ : BALL::PiecewiseFunction
- COIL : BALL::SecondaryStructure
- col_axis_ : BALL::CCP4File
- col_buffer_ : BALL::LineBasedFile
- collapseAll() : BALL::VIEW::MolecularControl
- collectAromaticAtoms_() : BALL::Kekuliser
- collectAtoms_() : BALL::ForceField
- collectBonds_() : BALL::MMFF94
- collectClasses_() : BALL::VIEW::HelpViewer
- collectClusterBelow_() : BALL::PoseClustering
- collectHeteroAtomTypes() : BALL::MMFF94AtomTyper
- collectPositions() : BALL::VIEW::AddBackboneModel
- collectRecursive_() : BALL::VIEW::Representation
- collectRingBonds_() : BALL::VIEW::AddBallAndStickModel
- collectRings_() : BALL::MMFF94
- collectSystems_() : BALL::Kekuliser
- color_ : BALL::VIEW::ColorButton, BALL::VIEW::LabelModel, BALL::VIEW::LightSource, BALL::VIEW::MeshBuffer
- color_index_ : BALL::VIEW::POVRenderer, BALL::VIEW::XML3DRenderer
- color_map_ : BALL::VIEW::ElementColorProcessor, BALL::VIEW::POVRenderer, BALL::VIEW::ResidueNameColorProcessor, BALL::VIEW::XML3DRenderer
- color_menu_ : BALL::VIEW::MolecularControl
- color_number_ : BALL::VIEW::ColorMap
- color_processor_ : BALL::VIEW::Representation
- color_strings_ : BALL::VIEW::POVRenderer, BALL::VIEW::XML3DRenderer
- ColorButton() : BALL::VIEW::ColorButton
- colorByCustomColor_() : BALL::VIEW::ModifyRepresentationDialog
- colorByGrid_() : BALL::VIEW::ModifyRepresentationDialog
- ColorByGridProcessor() : BALL::VIEW::ColorByGridProcessor
- colorChanged() : BALL::VIEW::ColorButton
- ColorExtension2() : BALL::VIEW::ColorExtension2
- ColorHSV() : BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA
- coloring_method_ : BALL::VIEW::Representation
- coloring_settings_ : BALL::VIEW::DisplayProperties
- coloring_update_enabled_ : BALL::VIEW::Representation
- coloringMuteableByDisplayProperties() : BALL::VIEW::ModelInformation
- coloringOptionsPressed() : BALL::VIEW::DisplayProperties
- ColoringSettingsDialog() : BALL::VIEW::ColoringSettingsDialog
- coloringUpdateEnabled() : BALL::VIEW::Representation
- coloringUpdatesChanged() : BALL::VIEW::DisplayProperties
- ColorMap() : BALL::VIEW::ColorMap, BALL::VIEW::POVRenderer, BALL::VIEW::XML3DRenderer
- colorMeshFromGrid_() : BALL::VIEW::ColorProcessor
- colorPressed() : BALL::VIEW::LightSettings
- ColorProcessor() : BALL::VIEW::ColorProcessor
- ColorRGBA : BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA
- colors : BALL::VIEW::MultiColorExtension
- colors_ : BALL::VIEW::InterpolateColorProcessor, BALL::VIEW::PositionColorProcessor
- ColorTable() : BALL::VIEW::ColorTable
- ColorUnit() : BALL::VIEW::ColorUnit
- ColorUnitHue() : BALL::VIEW::ColorUnitHue
- COLUMN_ID__Properties : BALL::VIEW::GeometricControl
- COLUMN_ID__TYPE : BALL::VIEW::GeometricControl
- column_names_ : BALL::QSAR::QSARData
- columnCount() : BALL::VIEW::ShortcutTableModel
- ColumnID : BALL::VIEW::GeometricControl
- com_ : BALL::PoseClustering
- combine() : BALL::FPTBondOrderStrategy::Assignment_
- combine_operation_ : BALL::GridBasedScoring
- combineDatapoints() : BALL::MPISupport
- combineEachSolution_() : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- combiner_ : BALL::FPTBondOrderStrategy
- combo_box_ : BALL::VIEW::PyWidget
- ComboBoxDelegate() : BALL::VIEW::ComboBoxDelegate
- comm_size_ : BALL::MPISupport
- Command : BALL::Client
- COMMAND__SEND_OBJECT : BALL::Client
- COMMAND__UNKOWN : BALL::Client
- CommandlineParser() : BALL::CommandlineParser
- comment : BALL::MOL2File::MoleculeStruct, BALL::MOL2File::SetStruct, BALL::MOL2File::SubstructureStruct, BALL::PDB::RecordCAVEAT, BALL::PDB::RecordHELIX, BALL::PDB::RecordMODRES, BALL::PDB::RecordSEQADV, BALL::PDB::RecordTURN, BALL::PDB::RecordTVECT, BALL::VIEW::Hotkey
- comment_format : BALL::VIEW::PythonHighlighter
- comment_pattern : BALL::VIEW::PythonHighlighter
- comments_ : BALL::HMOFile, BALL::MOL2File
- common_name : BALL::NMRStarFile::MonomericPolymer
- Comparator() : BALL::Comparator< T >
- compare() : BALL::FPTBondOrderStrategy::Assignment_, BALL::FPTBondOrderStrategy::BackTrackingState_, BALL::FPTBondOrderStrategy::DPConfig_, BALL::FPTBondOrderStrategy::DPJoinMapComparator_, BALL::Object, BALL::String
- Compare_() : BALL::DockResult::Compare_, BALL::VIEW::DockResultDialog::Compare_
- compare_record_type_format_ : BALL::PDBFile
- compareChains_() : BALL::SDGenerator
- compareChildren_() : BALL::ExpressionTree
- compareJoinTablePairs_() : BALL::FPTBondOrderStrategy
- CompareMode : BALL::String
- compareTablePointerEntries_() : BALL::FPTBondOrderStrategy
- compilePattern() : BALL::VIEW::PythonHighlighter
- complement_selection_action_ : BALL::VIEW::MainControl
- complementary_bases_ : BALL::VIEW::AddCartoonModel
- complementSelection() : BALL::VIEW::MainControl
- complementSelectionHelper_() : BALL::VIEW::MainControl
- complete_prefix_ : BALL::VIEW::PyWidget
- completionSelected_() : BALL::VIEW::PyWidget
- Complex : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- complex_atoms_ : BALL::PB
- ComplexPrecision : BALL::DoubleTraits, BALL::FloatTraits, BALL::LongDoubleTraits
- ComplexVector : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- Component : BALL::ConnectedComponentsProcessor, BALL::NMRStarFile::Sample::Component
- component_ : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >
- component_description : BALL::PDB::RecordCOMPND
- component_grouping_ : BALL::SmartsParser
- component_name : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
- component_no_ : BALL::SmartsParser, BALL::SmartsParser::SPNode
- component_number : BALL::PDB::RecordFORMUL
- component_solutions_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- ComponentFilter_() : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >
- components : BALL::NMRStarFile::Sample
- components_ : BALL::ComposedEnergyProcessor, BALL::ConnectedComponentsProcessor, BALL::ForceField, BALL::TreeWidth< UndirectedGraph >
- ComponentVector : BALL::ConnectedComponentsProcessor
- ComposedEnergyProcessor() : BALL::ComposedEnergyProcessor
- Composite() : BALL::Composite
- composite_ : BALL::VIEW::BALLThread, BALL::VIEW::CompositeMessage, BALL::VIEW::Dataset
- composite_hashmap_ : BALL::VIEW::ServerWidget::BALLViewServer
- composite_iterator_ : BALL::CompositeIteratorTraits
- composite_manager_ : BALL::VIEW::MainControl
- composite_name_ : BALL::VIEW::CompositeMessage
- composite_properties_action_ : BALL::VIEW::MolecularControl
- composite_to_item_ : BALL::VIEW::MolecularControl
- composite_to_position_ : BALL::VIEW::PositionColorProcessor
- CompositeConstIterator : BALL::Composite, BALL::VIEW::CompositeManager
- CompositeConstReverseIterator : BALL::Composite
- CompositeHashMap : BALL::VIEW::ServerWidget::BALLViewServer
- CompositeIterator : BALL::Composite, BALL::VIEW::CompositeManager
- CompositeIteratorTraits : BALL::Composite, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits
- CompositeManager() : BALL::VIEW::CompositeManager
- CompositeMessage() : BALL::VIEW::CompositeMessage
- CompositeMessageType : BALL::VIEW::CompositeMessage
- CompositeProperties() : BALL::VIEW::CompositeProperties
- compositeProperties() : BALL::VIEW::MolecularControl
- CompositeReverseIterator : BALL::Composite
- composites_ : BALL::VIEW::ColorProcessor, BALL::VIEW::Representation
- composites_locked_ : BALL::VIEW::MainControl
- composites_locked_mutex_ : BALL::VIEW::MainControl
- compositesAreLocked() : BALL::VIEW::MainControl
- CompositeSet : BALL::VIEW::ColorProcessor
- compress_output_ : BALL::GenericMolFile
- compute() : BALL::AtomInformationContent, BALL::Descriptor, BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_, BALL::NumberOfHydrogenBondAcceptors, BALL::NumberOfHydrogenBondDonors, BALL::NumberOfHydrophobicAtoms, BALL::PoseClustering, BALL::ReducedSurface, BALL::RelHydrophobicVdWSurface, BALL::RelNegativePolarVdWSurface, BALL::RelNegativeVdWSurface, BALL::RelNumberOfRotatableBonds, BALL::RelNumberOfRotatableSingleBonds, BALL::RelPolarVdWSurface, BALL::RelPositivePolarVdWSurface, BALL::RelPositiveVdWSurface, BALL::SolventAccessibleSurface, BALL::SolventExcludedSurface, BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >, BALL::TriangulatedSAS, BALL::TriangulatedSES, BALL::VertexAdjacency, BALL::VertexAdjacencyEquality, BALL::ZagrebIndex
- compute_() : BALL::SecondaryStructureProcessor
- COMPUTE_ALSO_CONNECTIVITY : BALL::AssignBondOrderProcessor::Default, BALL::AssignBondOrderProcessor::Option
- compute_also_connectivity_ : BALL::AssignBondOrderProcessor
- COMPUTE_ALSO_NON_OPTIMAL_SOLUTIONS : BALL::AssignBondOrderProcessor::Default, BALL::AssignBondOrderProcessor::Option
- compute_also_non_optimal_solutions_ : BALL::AssignBondOrderProcessor
- COMPUTE_AREA : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- compute_shifts_ : BALL::ShiftModel1D, BALL::ShiftModel2D
- COMPUTE_SURFACE : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- COMPUTE_SURFACE_MAP : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- COMPUTE_SURFACE_PER_ATOM : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- COMPUTE_VOLUME : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- computeAdjacencyMatrix_() : BALL::SDGenerator
- computeAllDescriptors() : BALL::ConnectivityBase, BALL::PartialChargeBase, BALL::SimpleBase, BALL::SurfaceBase
- computeAllMoments() : BALL::Spectrum< DataT, PeakT, PositionT >
- computeAngularDemand_() : BALL::SDGenerator
- computeAngularSeparation_() : BALL::SDGenerator
- computeBitSize() : BALL::VIEW::PixelFormat
- computeBondOrders() : BALL::VIEW::Scene
- computeByteSize() : BALL::VIEW::PixelFormat
- computeCenterOfMasses_() : BALL::PoseClustering
- computeCFS_() : BALL::SDGenerator
- computeCompleteLinkageRMSD() : BALL::PoseClustering
- computeCoreCFS_() : BALL::SDGenerator
- computeCovarianceMatrix() : BALL::PoseClustering
- computeDefaultPressed() : BALL::VIEW::StageSettings
- computeDistance() : BALL::PeptideCapProcessor
- computeForgetBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- computeHuInvariants() : BALL::Spectrum< DataT, PeakT, PositionT >
- computeHuInvariantsDifferences() : BALL::Spectrum< DataT, PeakT, PositionT >
- computeIntroduceBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- computeIsoContourSurface() : BALL::VIEW::RegularData3DController
- computeJoinBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- computeLeafIntroduceBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- computeNextSolution() : BALL::AssignBondOrderProcessor, BALL::AStarBondOrderStrategy, BALL::BondOrderAssignmentStrategy, BALL::BranchAndBoundBondOrderStrategy, BALL::FPTBondOrderStrategy, BALL::ILPBondOrderStrategy, BALL::KGreedyBondOrderStrategy, BALL::VIEW::AssignBondOrderResultsDialog
- computeProperties_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- computeRootBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- computeSettingsFromModelDistance() : BALL::VIEW::StereoSettingsDialog
- computeShelleyPriorities_() : BALL::SDGenerator
- computeSize() : BALL::VIEW::FrameBufferFormat
- computeSphereTesselation_() : BALL::NumericalSAS
- computeTilingSetup_() : BALL::VIEW::TilingRenderer
- computeTopology() : BALL::TContourSurface< T >::Cube
- computeTransformation() : BALL::RMSDMinimizer
- computeTreeWidth() : BALL::TreeWidth< UndirectedGraph >
- computeTriangles() : BALL::TContourSurface< T >
- computeVirtualHydrogens_() : BALL::AssignBondOrderProcessor
- computeWardDistance_() : BALL::PoseClustering
- computing_data_ : BALL::FPTBondOrderStrategy
- ComputingData_() : BALL::FPTBondOrderStrategy::ComputingData_
- concentration_max : BALL::NMRStarFile::Sample::Component
- concentration_min : BALL::NMRStarFile::Sample::Component
- concentration_value : BALL::NMRStarFile::Sample::Component
- condition : BALL::NMRStarFile::NMRAtomDataSet
- conect_atoms : BALL::PDB::Structure
- conect_records : BALL::PDB::BookKeeping
- conf_ids_ : BALL::FlexibleMolecule
- config : BALL::FPTBondOrderStrategy::BackTrackingState_
- ConfigDialog() : BALL::VIEW::ConfigDialog
- ConfigurationReadingError() : BALL::QSAR::Exception::ConfigurationReadingError
- Conformation() : BALL::Conformation, BALL::ConformationSet
- conformation : BALL::PLP::NonBondedPairData
- CONFORMATION_SCALE : BALL::ScoringFunction::Default, BALL::ScoringFunction::Option
- conformation_scale_ : BALL::ScoringFunction
- conformation_set_ : BALL::DockResult, BALL::VIEW::DockingFinishedMessage
- conformations : BALL::FlexibleMolecule
- ConformationSet() : BALL::ConformationSet
- ConjugateGradientMinimizer() : BALL::ConjugateGradientMinimizer
- connect() : BALL::Client, BALL::DisulfidBondProcessor
- connect_to : BALL::FragmentDB::BuildBondsProcessor::Connection
- connectChilds_() : BALL::VIEW::PTEDialog
- CONNECTED : BALL::SmartsParser::SPAtom
- connected_stream_ : BALL::TCPServer
- connectedComponents() : BALL::BinaryFingerprintMethods
- ConnectedComponentsProcessor() : BALL::ConnectedComponentsProcessor
- ConnectedToPredicate() : BALL::ConnectedToPredicate
- ConnectionList : BALL::FragmentDB::BuildBondsProcessor, BALL::SmilesParser
- ConnectionObject() : BALL::VIEW::ConnectionObject
- connectionRequested() : BALL::TCPServer
- connections : BALL::StaticLigandFragment
- connections_ : BALL::FragmentDB::BuildBondsProcessor, BALL::SmilesParser
- connectivity : BALL::GAFFTypeProcessor::TypeDefinition
- CONNECTIVITY_CUTOFF : BALL::AssignBondOrderProcessor::Default, BALL::AssignBondOrderProcessor::Option
- ConnectivityBase() : BALL::ConnectivityBase
- connectTo() : BALL::DockProblem
- CONNOLLY : BALL::GeometricFit
- CONST : BALL::SLICKEnergy::Default, BALL::SLICKEnergy::Option, BALL::SLICKScore::Default, BALL::SLICKScore::Option
- const_argument_pointer : BALL::UnaryFunctor< ArgumentType, ResultType >
- const_argument_reference : BALL::UnaryFunctor< ArgumentType, ResultType >
- const_first_argument_pointer : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
- const_first_argument_reference : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
- const_iterator : BALL::FPTBondOrderStrategy::DPTable_, BALL::HashSet< Key >, BALL::List< Value >, BALL::PDBRecords, BALL::ResidueRotamerSet, BALL::String, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- const_penalty_ : BALL::ILPBondOrderStrategy
- const_pointer : BALL::HashSet< Key >, BALL::String, BALL::VIEW::CompositeManager
- const_reference : BALL::HashSet< Key >, BALL::PDBRecords, BALL::String, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::CompositeManager
- const_reverse_iterator : BALL::PDBRecords, BALL::String
- const_second_argument_pointer : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
- const_second_argument_reference : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
- CONSTANT : BALL::UhligCavFreeEnergyProcessor::Default, BALL::UhligCavFreeEnergyProcessor::Option
- constant_ : BALL::MutableConstant< DataType >
- constants_ : BALL::ParsedFunction< arg >
- ConstAtomPtrMap : BALL::MolecularGraph
- ConstBidirectionalIterator() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >
- ConstBondPtrMap : BALL::MolecularGraph
- ConstBoxIterator : BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >
- ConstContactFaceIterator : BALL::SolventExcludedSurface
- ConstDataIterator : BALL::HashGridBox3< Item >
- ConstEdgeIterator : BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::SolventExcludedSurface, BALL::TriangulatedSurface
- ConstFaceIterator : BALL::GraphVertex< Vertex, Edge, Face >
- ConstForwardIterator() : BALL::ConstForwardIterator< Container, DataType, Position, Traits >
- ConstIterator : BALL::AtomVector, BALL::ConnectedToPredicate::CTPNode, BALL::EdgeItem< Node, Edge >, BALL::Enumerator< Container, SiteIterator, Variant >, BALL::ExpressionParser::SyntaxTree, BALL::Gradient, BALL::HashMap< Key, T >, BALL::HashSet< Key >, BALL::List< Value >, BALL::NodeItem< Node, Edge >, BALL::PDBRecords, BALL::PeakList< PT >, BALL::PyColorRGBAVector, BALL::PyCompositeList, BALL::PyDatasetVector, BALL::PyIndexList, BALL::ResidueRotamerSet, BALL::ResourceEntry, BALL::ResourceFile, BALL::Spectrum< DataT, PeakT, PositionT >, BALL::StringHashMap< Value >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- ConstOrientationIterator : BALL::SASFace
- ConstPointIterator : BALL::TriangulatedSurface
- Constraint() : BALL::Constraint
- constraints : BALL::ScoringFunction
- ConstRandomAccessIterator() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >
- ConstReference : BALL::PDBRecords
- ConstReverseIterator : BALL::Gradient, BALL::PDBRecords
- construct() : BALL::Peptides::PeptideBuilder
- constructExpressionTree_() : BALL::Expression
- constructRingSystem_() : BALL::SDGenerator
- ConstSingularEdgeIterator : BALL::SolventExcludedSurface
- ConstSphericFaceIterator : BALL::SolventExcludedSurface
- ConstToricFaceIterator : BALL::SolventExcludedSurface
- ConstTriangleIterator : BALL::TriangulatedSurface
- ConstVertexIterator : BALL::GraphFace< Vertex, Edge, Face >, BALL::SolventExcludedSurface
- consumed_valences : BALL::FPTBondOrderStrategy::DPConfig_
- contact_faces_ : BALL::SolventExcludedSurface
- ContactFaceIterator : BALL::SolventExcludedSurface
- container_ : BALL::Enumerator< Container, SiteIterator, Variant >, BALL::VIEW::DockWidget
- ContainerConstPointer : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
- ContainerPointer : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
- ContainerType : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
- containsAtomChilds_() : BALL::MOL2File
- containsSelection() : BALL::Composite
- contentsDragEnterEvent() : BALL::VIEW::DragLogView, BALL::VIEW::PyWidget
- contentsDragLeaveEvent() : BALL::VIEW::DragLogView
- contentsDropEvent() : BALL::VIEW::DragLogView, BALL::VIEW::PyWidget
- ContentType : BALL::JCAMPFile
- contex_mutex_ : BALL::VIEW::GLRenderWindow
- context_composite_ : BALL::VIEW::MolecularControl
- context_item_ : BALL::VIEW::GenericControl, BALL::VIEW::MolecularControl
- context_menu_ : BALL::VIEW::GeometricControl, BALL::VIEW::MolecularControl
- context_menu_actions_ : BALL::VIEW::GeometricControl
- context_plane_ : BALL::VIEW::GeometricControl
- context_representation_ : BALL::VIEW::GeometricControl
- continuation : BALL::PDB::RecordAUTHOR, BALL::PDB::RecordCAVEAT, BALL::PDB::RecordCOMPND, BALL::PDB::RecordEXPDTA, BALL::PDB::RecordHETNAM, BALL::PDB::RecordHETSYN, BALL::PDB::RecordKEYWDS, BALL::PDB::RecordOBSLTE, BALL::PDB::RecordREVDAT, BALL::PDB::RecordSOURCE, BALL::PDB::RecordSPRSDE, BALL::PDB::RecordTITLE
- continuation_number : BALL::PDB::RecordFORMUL
- CONTINUE : BALL::Processor
- CONTINUED_LINE : BALL::KCFFile
- ContourSurfaceDialog() : BALL::VIEW::ContourSurfaceDialog
- contractEdge() : BALL::TreeWidthImplementation< UndirectedGraph >::MinorMinWidthReducer
- control_ : BALL::VIEW::DatasetController
- control_selection_ : BALL::VIEW::MainControl
- CONTROL_WINDOW : BALL::VIEW::Scene
- controller_ : BALL::VIEW::GridVisualizationDialog
- controllers_ : BALL::VIEW::DatasetControl
- ControlSelectionMessage() : BALL::VIEW::ControlSelectionMessage
- CONV_ITERATIONS : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- CONV_START : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- conv_start_ : BALL::GeneticAlgorithm
- CONV_VALUE : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- conventions_ : BALL::Peptides::NameConverter
- conversion_table_ : BALL::Peptides::NameConverter
- convert_ : BALL::Rescoring
- convertBrick_() : BALL::DSN6File
- convertCameraToSceneCoordinates() : BALL::VIEW::Camera
- convertMaterial() : BALL::VIEW::RTfactRenderer
- convertName() : BALL::Peptides::NameConverter
- convertObject() : BALL::MoleculeObjectCreator, BALL::ObjectCreator
- convertSnaphots2Transformations() : BALL::PoseClustering
- convertTime() : BALL::ScoringFunction
- convertToFullAssignment() : BALL::PartialBondOrderAssignment
- convertToGaussian() : BALL::Spectrum< DataT, PeakT, PositionT >
- convertToLorentzian() : BALL::Spectrum< DataT, PeakT, PositionT >
- convertToRegularData3DGrids() : BALL::ScoreGridSet
- convertTransformations2Snaphots() : BALL::PoseClustering
- coordinate_transformation_records : BALL::PDB::BookKeeping
- coordinateSystemEnabled() : BALL::VIEW::Stage
- CoordinateType : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- COPPER : BALL::Element
- copy() : BALL::File, BALL::String, BALL::TriangulatedSurface, BALL::VIEW::MolecularControl
- copy_id_ : BALL::VIEW::MolecularControl
- copy_list_ : BALL::VIEW::MolecularControl
- copyAdvancedParametersToOptions() : BALL::CommandlineParser
- copyData() : BALL::QSAR::Model
- copyDescriptorIDs() : BALL::QSAR::Model
- copyTo() : BALL::File
- cor_threshold : BALL::QSAR::FeatureSelectionConfiguration
- CORD_ : BALL::DCDFile
- CORE : BALL::RingAnalyser
- CORE_CHAIN : BALL::SDGenerator
- corr_par_ : BALL::ShiftedLVMMMinimizer
- correct_CA_shifts_ : BALL::HaighMallionShiftProcessor
- correctASUPositions_() : BALL::CrystalGenerator
- CORRECTION_PARAMETER : BALL::ShiftedLVMMMinimizer::Default, BALL::ShiftedLVMMMinimizer::Option
- CorrectionParameter : BALL::ShiftedLVMMMinimizer
- CosineTorsion() : BALL::CosineTorsion
- COSY_CH : BALL::ShiftModel2D
- COSY_HH : BALL::ShiftModel2D
- COULOMB : BALL::FDPB::Boundary
- count() : BALL::Composite
- count_items_action_ : BALL::VIEW::MolecularControl
- countAtomContainers() : BALL::AtomContainer
- countAtoms() : BALL::AtomContainer, BALL::System
- countBondOrders() : BALL::AddHydrogenProcessor
- countBonds() : BALL::Atom, BALL::AtomContainer
- countChains() : BALL::Protein, BALL::System
- countChildren() : BALL::ResourceEntry
- countComponents() : BALL::ForceField
- countConformations() : BALL::DockResultFile
- countCovalentBonds() : BALL::ScoringFunction
- countDescendants() : BALL::Composite, BALL::ResourceEntry
- countDirectories() : BALL::Directory
- countEdges() : BALL::SmartsParser::SPNode
- countFields() : BALL::String
- countFieldsQuoted() : BALL::String
- countFiles() : BALL::Directory
- countFragments() : BALL::System
- countFragments_() : BALL::StructureMapper
- countInstances_() : BALL::Embeddable
- countInterBonds() : BALL::AtomContainer
- countIntraBonds() : BALL::AtomContainer
- countItems() : BALL::Directory, BALL::VIEW::MolecularControl
- countMolecules() : BALL::SDFile, BALL::System
- countNamedProperties() : BALL::PropertyManager
- countNeighboringReceptorAtoms() : BALL::ScoringFunction
- countNonEmptyBoxes() : BALL::HashGrid3< Item >
- countNucleicAcids() : BALL::System
- countNucleotides() : BALL::NucleicAcid, BALL::System
- countPDBAtoms() : BALL::Chain, BALL::Protein, BALL::Residue, BALL::SecondaryStructure
- countProperties() : BALL::PropertyManager, BALL::SmartsParser::SPAtom
- countProteins() : BALL::System
- countRealValences() : BALL::SmartsParser::SPAtom, BALL::SmilesParser::SPAtom
- countRecord() : BALL::PDBFile
- countRecordFields() : BALL::PDBFile
- countRecords() : BALL::PDBFile
- countResidues() : BALL::Chain, BALL::Protein, BALL::SecondaryStructure, BALL::System
- counts_format_ : BALL::MOLFile
- countSecondaryStructures() : BALL::Chain, BALL::Protein, BALL::System
- countSubexpressions() : BALL::RegularExpression
- countValue() : BALL::BitVector
- countVariants() : BALL::Enumerator< Container, SiteIterator, Variant >
- covariance_matrix_ : BALL::PoseClustering
- Cp_ref : BALL::CharmmEEF1::Values
- Cp_ref_ : BALL::CharmmEEF1
- Cr : BALL::Element
- crbegin() : BALL::String
- crd : BALL::MMFF94AtomType
- create() : BALL::Directory, BALL::Factory< T >, BALL::QSAR::ModelFactory< T >, BALL::QSAR::RegistryEntry, BALL::String
- create6Ring_() : BALL::VIEW::AddCartoonModel
- create_button_ : BALL::VIEW::DisplayProperties
- create_coordinate_system_ : BALL::VIEW::Scene
- CREATE_DISTANCE_GRID : BALL::VIEW::MolecularTaskMessage
- CREATE_INTERACTION_FILE : BALL::CHPI::Default, BALL::CHPI::Option, BALL::CHPISlick::Default, BALL::CHPISlick::Option
- CREATE_INTERACTIONS_FILE : BALL::Lipophilic::Default, BALL::Lipophilic::Option
- create_methods_ : BALL::Expression, BALL::PersistenceManager
- create_mutex_ : BALL::VIEW::UIOperationMode
- create_representations_for_new_molecules_ : BALL::VIEW::DisplayProperties
- create_XHTML_ : BALL::VIEW::XML3DRenderer
- createActions_() : BALL::VIEW::EditMode
- createAllLigandNonBondedPairs() : BALL::ScoringFunction
- createAtom() : BALL::SmartsParser, BALL::SmilesParser
- createAtomGrid() : BALL::VIEW::ColorProcessor
- createBond() : BALL::Atom, BALL::Bond, BALL::SmilesParser
- createBond_() : BALL::VIEW::EditMode
- createBonds() : BALL::SmilesParser
- createBoundaryMolecule() : BALL::ReferenceArea
- createBoxes_() : BALL::VIEW::GLRenderer
- createColorProcessor() : BALL::VIEW::ColoringSettingsDialog
- createCombination() : BALL::Enumerator< Container, SiteIterator, Variant >
- createContourLine() : BALL::TContourLine< T >
- createCoordinateSystem() : BALL::VIEW::Scene
- createCoordinateSystem_() : BALL::VIEW::Scene
- createCoordinateSystemAtOrigin() : BALL::VIEW::Scene
- created_temp_filenames_ : BALL::File
- createDisk() : BALL::TriangulatedSurface
- createDotBox_() : BALL::VIEW::GLRenderer
- createDottedSphere_() : BALL::VIEW::GLRenderer
- createDoubleRing_() : BALL::VIEW::AddCartoonModel
- createEditor() : BALL::VIEW::ComboBoxDelegate
- createEditorWidget_() : BALL::VIEW::PropertyEditor
- createEntries() : BALL::VIEW::AssignBondOrderResultsDialog
- createEvaluationMethod() : BALL::VIEW::DockingController
- createFieldLine_() : BALL::VIEW::FieldLineCreator
- createFPSInfo_() : BALL::VIEW::Scene
- createGeometricObjects() : BALL::VIEW::AddBackboneModel, BALL::VIEW::AddBallAndStickModel, BALL::VIEW::AddSurfaceModel, BALL::VIEW::AtomBondModelBaseProcessor, BALL::VIEW::LabelModel, BALL::VIEW::ModelProcessor
- createGridFromCameraDistance() : BALL::VIEW::MolecularStructure
- createGridFromDistance() : BALL::VIEW::MolecularStructure
- createHelix_() : BALL::VIEW::AddCartoonModel
- createHistogramGrid() : BALL::VIEW::RegularData3DController
- createHotkey() : BALL::VIEW::Hotkey
- createKernel1() : BALL::QSAR::ModelFactory< T >, BALL::QSAR::RegistryEntry
- createKernel2() : BALL::QSAR::ModelFactory< T >, BALL::QSAR::RegistryEntry
- createLigandNonbondedPairVector() : BALL::ScoringFunction
- createLineBox_() : BALL::VIEW::GLRenderer
- createLines() : BALL::VIEW::FieldLineCreator
- createMap() : BALL::VIEW::ColorMap
- createMapJet() : BALL::VIEW::ColorMap
- createMapping() : BALL::NMRStarFile::BALLToBMRBMapper
- createMenuEntries() : BALL::VIEW::DatasetController, BALL::VIEW::DockResultController, BALL::VIEW::RaytraceableGridController, BALL::VIEW::RegularData3DController, BALL::VIEW::TrajectoryController, BALL::VIEW::VectorGridController
- createMenuHelpEntry_() : BALL::VIEW::PyWidget
- CreateMethod : BALL::PersistenceManager, BALL::ShiftModel
- CreateMethodMap : BALL::ShiftModel
- createModel_() : BALL::VIEW::AddBackboneModel, BALL::VIEW::AddCartoonModel
- createModelProcessor() : BALL::VIEW::ModelSettingsDialog
- createModule_() : BALL::ShiftModel
- createMolecule_() : BALL::VIEW::Scene
- createMultipleLabels_() : BALL::VIEW::LabelDialog
- createNewBool_() : BALL::VIEW::PropertyEditor
- createNewClippingPlane() : BALL::VIEW::GeometricControl
- createNewDouble_() : BALL::VIEW::PropertyEditor
- createNewFloat_() : BALL::VIEW::PropertyEditor
- createNewInt_() : BALL::VIEW::PropertyEditor
- createNewMolecule() : BALL::VIEW::Scene
- createNewString_() : BALL::VIEW::PropertyEditor
- createNewUInt_() : BALL::VIEW::PropertyEditor
- createNonbondedPairVector() : BALL::ScoringFunction
- createObject() : BALL::PersistenceManager
- createOneLabel_() : BALL::VIEW::LabelDialog
- createPeak_() : BALL::ShiftModel2D
- createPopupMenu() : BALL::VIEW::MainControl
- createRaytraceableGrid() : BALL::VIEW::RegularData3DController
- createRepresentation() : BALL::VIEW::DisplayProperties, BALL::VIEW::MolecularControl, BALL::VIEW::RepresentationManager
- createRepresentation_() : BALL::VIEW::MolecularControl
- CreateRepresentationMessage() : BALL::VIEW::CreateRepresentationMessage
- createRepresentationMode() : BALL::VIEW::DisplayProperties
- createResidue_() : BALL::Peptides::PeptideBuilder
- createRibbon_() : BALL::VIEW::AddBackboneModel
- createScript_() : BALL::VIEW::PyWidget
- createSimpleNucleicAcid_() : BALL::VIEW::AddCartoonModel
- createSolidBox_() : BALL::VIEW::GLRenderer
- CreateSpectrumProcessor() : BALL::CreateSpectrumProcessor
- createSphere() : BALL::VIEW::RegularData3DController
- createSpheres_() : BALL::VIEW::GLRenderer
- createSphereTemplate_() : BALL::VIEW::XML3DRenderer
- createStaticLigandFragments() : BALL::ScoringFunction
- createStrand_() : BALL::VIEW::AddCartoonModel
- createSubcategory() : BALL::Options
- createTemporaryFilename() : BALL::File
- createTexture() : BALL::VIEW::GLRenderWindow
- createTextureFromGrid() : BALL::VIEW::GLRenderer
- createTrivialMapping() : BALL::NMRStarFile::BALLToBMRBMapper
- createTube() : BALL::TriangulatedSurface
- createTube_() : BALL::VIEW::AddBackboneModel
- createTubeHelix_() : BALL::VIEW::AddCartoonModel
- createTubes_() : BALL::VIEW::GLRenderer
- createTubeTransform_() : BALL::VIEW::XML3DRenderer
- createVectorGrid() : BALL::VIEW::RegularData3DController
- createVoid() : BALL::Factory< T >
- createWatsonCrickModel_() : BALL::VIEW::AddCartoonModel
- createXHTMLFooter() : BALL::VIEW::XML3DRenderer
- createXHTMLHeader() : BALL::VIEW::XML3DRenderer
- creating_representations_ : BALL::VIEW::GeometricControl
- CreationMethod : BALL::Expression
- crend() : BALL::String
- crossValidation() : BALL::QSAR::ClassificationValidation, BALL::QSAR::RegressionValidation, BALL::QSAR::Validation
- crystal_dimension_ : BALL::DSN6File
- CrystalGenerator() : BALL::CrystalGenerator
- CrystalInfo() : BALL::CrystalInfo
- Cs : BALL::Element
- csv_compound_labels : BALL::QSAR::InputConfiguration
- csv_desc_labels : BALL::QSAR::InputConfiguration
- csv_file : BALL::QSAR::InputConfiguration
- csv_no_response : BALL::QSAR::InputConfiguration
- csv_separator : BALL::QSAR::InputConfiguration
- CTPNode() : BALL::ConnectedToPredicate::CTPNode
- Cu : BALL::Element
- Cube() : BALL::TContourSurface< T >::Cube
- CubicFunction() : BALL::CubicFunction< Function, DataType >
- CubicSpline1D() : BALL::CubicSpline1D
- CubicSpline2D() : BALL::CubicSpline2D
- CUDAError() : BALL::Exception::CUDAError
- CUPRUM : BALL::Element
- CURIUM : BALL::Element
- curr_modifying_ : BALL::VIEW::PyWidget
- curr_num_of_vect_pairs_ : BALL::StrangLBFGSMinimizer
- curr_number_of_cols_ : BALL::ShiftedLVMMMinimizer
- current_aps_type : BALL::GAFFCESParser::State
- current_aromatic_system_ : BALL::Kekuliser
- current_atom : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_, BALL::GAMESSLogFile
- current_atom_ : BALL::VIEW::Scene
- current_block_ : BALL::GAMESSDatFile
- current_bond_ : BALL::VIEW::Scene
- current_chain : BALL::PDB::AdditionalAtomInfo
- current_chain_ : BALL::PDBFile
- current_coefficient_line : BALL::GAMESSLogFile
- current_const_atom_ : BALL::PDBFile
- current_const_chain_ : BALL::PDBFile
- current_const_protein_ : BALL::PDBFile
- current_const_residue_ : BALL::PDBFile
- current_datablock_ : BALL::CIFFile
- CURRENT_DIRECTORY : BALL::FileSystem
- current_energy_ : BALL::EnergyMinimizer
- current_grad_ : BALL::EnergyMinimizer
- current_image_ : BALL::VIEW::GLOffscreenTarget
- current_indent_ : BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer
- current_item_ : BALL::CIFFile
- current_light_ : BALL::VIEW::LightSettings
- current_line_ : BALL::VIEW::PyWidget
- current_mode_ : BALL::VIEW::InteractionModeManager
- current_model_ : BALL::PDBFile
- current_molecule_ : BALL::GAFFTypeProcessor
- current_parser : BALL::CIFFile::State, BALL::ExpressionParser::State, BALL::GAFFCESParser::State, BALL::GAMESSDatFile::State, BALL::GAMESSLogFile::State, BALL::SmartsParser::State, BALL::SmilesParser::State
- current_parser_ : BALL::ExpressionParser, BALL::SmartsParser, BALL::SmilesParser
- current_PDB_atom_ : BALL::PDBFile
- current_penalty_ : BALL::Kekuliser
- current_position_ : BALL::TContourSurface< T >::Cube
- current_predicate : BALL::GAFFCESParser
- current_protein_ : BALL::PDBFile
- current_record_ : BALL::PDBFile
- current_record_type_ : BALL::PDBFile
- current_reply_ : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- current_residue : BALL::PDB::AdditionalAtomInfo
- current_residue_ : BALL::PDBFile, BALL::VIEW::MolecularControl
- current_root_predicate : BALL::GAFFCESParser
- current_round_ : BALL::GeometricFit
- current_saveframe_ : BALL::CIFFile
- current_script_ : BALL::VIEW::PyWidget
- current_set : BALL::GAMESSLogFile
- current_set_ : BALL::PoseClustering
- current_snapshot_ : BALL::DCDFile, BALL::SnapShotManager
- current_solution_ : BALL::KGreedyBondOrderStrategy
- current_sphere_number_ : BALL::VIEW::XML3DRenderer
- current_state_ : BALL::FPTBondOrderStrategy::DPBackTracking_
- current_temperature_ : BALL::MolecularDynamics
- CURRENT_TIME : BALL::MolecularDynamics::Default, BALL::MolecularDynamics::Option
- current_time_ : BALL::MolecularDynamics
- current_tube_number_ : BALL::VIEW::XML3DRenderer
- currentEntry() : BALL::VIEW::Preferences
- currentPage() : BALL::VIEW::Preferences
- currentStackPage() : BALL::VIEW::PreferencesEntry
- custom_color_ : BALL::VIEW::DisplayProperties, BALL::VIEW::LabelDialog
- custom_model_information_ : BALL::VIEW::Representation
- CustomColorProcessor() : BALL::VIEW::CustomColorProcessor
- customColorTransparencyChanged() : BALL::VIEW::ModifyRepresentationDialog
- customEvent() : BALL::VIEW::GLRenderWindow, BALL::VIEW::Scene
- cut() : BALL::TriangulatedSurface, BALL::VIEW::MolecularControl
- cut_hash_map_ : BALL::TContourSurface< T >
- cut_id_ : BALL::VIEW::MolecularControl
- cut_off2_ : BALL::EFShiftProcessor, BALL::HaighMallionShiftProcessor
- cutlo_ : BALL::EnergyMinimizer
- cutoffSearch() : BALL::BinaryFingerprintMethods
- cutPlaneInstances : BALL::VIEW::RTfactRenderer::RTfactData
- cutPlaneMeshes : BALL::VIEW::RTfactRenderer::RTfactData
- cutPlanes : BALL::VIEW::RTfactRenderer::RTfactData
- cutPlaneShader : BALL::VIEW::RTfactRenderer::RTfactData
- CW_AL : BALL::SmartsParser
- CW_AL_OR_UNSPECIFIED : BALL::SmartsParser
- CW_DEFAULT : BALL::SmartsParser
- CW_DEFAULT_OR_UNSPECIFIED : BALL::SmartsParser
- CW_OH : BALL::SmartsParser
- CW_OH_OR_UNSPECIFIED : BALL::SmartsParser
- CW_SP : BALL::SmartsParser
- CW_SP_OR_UNSPECIFIED : BALL::SmartsParser
- CW_TB : BALL::SmartsParser
- CW_TB_OR_UNSPECIFIED : BALL::SmartsParser
- CW_TH : BALL::SmartsParser
- CW_TH_OR_UNSPECIFIED : BALL::SmartsParser
- CX_DISTANCE_UPPER : BALL::CHPI::Default, BALL::CHPI::Option, BALL::CHPISlick::Default, BALL::CHPISlick::Option
- cys_pressed() : BALL::VIEW::PeptideDialog