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BALL::Bond Member List

This is the complete list of members for BALL::Bond, including all inherited members.

AncestorConstIterator typedef | BALL::Composite |
AncestorIterator typedef | BALL::Composite |
appendChild(Composite &composite) | BALL::Composite |
apply(UnaryProcessor< T > &processor) | BALL::Composite |
apply(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
apply(UnaryProcessor< T > &processor) | BALL::Composite |
apply(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyAncestor(UnaryProcessor< T > &processor) | BALL::Composite |
applyAncestor(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyChild(UnaryProcessor< T > &processor) | BALL::Composite |
applyChild(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyDescendant(UnaryProcessor< T > &processor) | BALL::Composite |
applyDescendant(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyDescendantPostorder(UnaryProcessor< T > &processor) | BALL::Composite |
applyDescendantPostorder(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyDescendantPreorder(UnaryProcessor< T > &processor) | BALL::Composite |
applyDescendantPreorder(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyLevel(UnaryProcessor< T > &processor, long level) | BALL::Composite |
applyLevel(ConstUnaryProcessor< T > &processor, long level) const | BALL::Composite |
applyPostorder(UnaryProcessor< T > &processor) | BALL::Composite |
applyPostorder(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
applyPreorder(UnaryProcessor< T > &processor) | BALL::Composite |
applyPreorder(ConstUnaryProcessor< T > &processor) const | BALL::Composite |
Atom class | BALL::Bond | friend
AutoDeletable() | BALL::AutoDeletable | protected
AutoDeletable(const AutoDeletable &auto_deletable, bool deep=false) | BALL::AutoDeletable | protected
beginAncestor() | BALL::Composite | inline
beginAncestor() const | BALL::Composite | inline
beginChildComposite() | BALL::Composite | inline
beginChildComposite() const | BALL::Composite | inline
beginComposite() | BALL::Composite | inline
beginComposite() const | BALL::Composite | inline
beginNamedProperty() | BALL::PropertyManager |
Bond() | BALL::Bond |
Bond(const Bond &bond, bool deep=true) | BALL::Bond |
Bond(const String &name, Atom &first, Atom &second, Order order=BALL_BOND_DEFAULT_ORDER, Type type=BALL_BOND_DEFAULT_TYPE) | BALL::Bond |
bond_order_ | BALL::Bond | protected
bond_type_ | BALL::Bond | protected
BondOrder enum name | BALL::Bond |
BondType enum name | BALL::Bond |
BOTH enum value | BALL::Composite |
ChildCompositeConstIterator typedef | BALL::Composite |
ChildCompositeConstReverseIterator typedef | BALL::Composite |
ChildCompositeIterator typedef | BALL::Composite |
ChildCompositeReverseIterator typedef | BALL::Composite |
clear() | BALL::Bond | virtual
clearLastPtr() | BALL::AutoDeletable | inline static
clearProperty(Property property) | BALL::PropertyManager |
clearProperty(const std::string &name) | BALL::PropertyManager |
clone(Composite &root) const | BALL::Composite |
compare(const Object &object) const | BALL::Object |
Composite() | BALL::Composite |
Composite(const Composite &composite, bool deep=true) | BALL::Composite |
CompositeConstIterator typedef | BALL::Composite |
CompositeConstReverseIterator typedef | BALL::Composite |
CompositeIterator typedef | BALL::Composite |
CompositeReverseIterator typedef | BALL::Composite |
containsSelection() const | BALL::Composite |
count(const KernelPredicateType &predicate) const | BALL::Composite |
countDescendants() const | BALL::Composite |
countNamedProperties() const | BALL::PropertyManager |
countProperties() const | BALL::PropertyManager |
createBond(Bond &bond, Atom &first, Atom &second) | BALL::Bond | static
DEFAULT_PROCESSOR | BALL::Composite | static
DEFAULT_UNARY_PREDICATE | BALL::Composite | static
deleteChildrenList_(std::list< Composite * > &composites) | BALL::Composite |
deselect() | BALL::Composite | virtual
destroy() | BALL::Bond | virtual
BALL::Composite::destroy(bool virtual_destroy) | BALL::Composite |
dump(std::ostream &s=std::cout, Size depth=0) const | BALL::Bond | virtual
BALL::PersistentObject::dump(::std::ostream &s=std::cout, Size depth=0) const | BALL::Object | virtual
BALL::Selectable::dump(::std::ostream &s=std::cout, Size depth=0) const | BALL::Selectable | virtual
endAncestor() | BALL::Composite | inline
endAncestor() const | BALL::Composite | inline
endChildComposite() | BALL::Composite | inline
endChildComposite() const | BALL::Composite | inline
endComposite() | BALL::Composite | inline
endComposite() const | BALL::Composite | inline
endNamedProperty() | BALL::PropertyManager |
finalize() | BALL::Bond | virtual
first_ | BALL::Bond | protected
BALL::get(Composite &composite, bool deep=true) const | BALL::Composite |
BALL::Selectable::get(Selectable &selectable, bool deep=true) const | BALL::Selectable |
BALL::PropertyManager::get(PropertyManager &property_manager) const | BALL::PropertyManager |
getAncestor(const T &) | BALL::Composite |
getAncestor(const T &) const | BALL::Composite |
getAncestor(const T &) | BALL::Composite |
getAncestor(const T &) const | BALL::Composite |
getBitVector() | BALL::PropertyManager |
getBitVector() const | BALL::PropertyManager |
getBoundAtom(const Atom &atom) const | BALL::Bond |
getBoundAtom(const Atom &atom) | BALL::Bond |
getChild(Index index) | BALL::Composite |
getChild(Index index) const | BALL::Composite |
getDegree() const | BALL::Composite |
getDepth() const | BALL::Composite |
getFirstAtom() const | BALL::Bond |
getFirstAtom() | BALL::Bond |
getFirstChild() | BALL::Composite |
getFirstChild() const | BALL::Composite |
getHandle() const | BALL::Object |
getHeight() const | BALL::Composite |
getLastChild() | BALL::Composite |
getLastChild() const | BALL::Composite |
getLength() const | BALL::Bond |
getLowestCommonAncestor(const Composite &composite) | BALL::Composite |
getLowestCommonAncestor(const Composite &composite) const | BALL::Composite |
getModificationTime() const | BALL::Composite |
getName() const | BALL::Bond |
getNamedProperty(Position index) const | BALL::PropertyManager |
getNamedProperty(Position index) | BALL::PropertyManager |
getNewHandle() | BALL::Object | static
getNext(const T &) | BALL::Composite |
getNext(const T &dummy) const | BALL::Composite |
getNext(const T &) | BALL::Composite |
getNext(const T &dummy) const | BALL::Composite |
getNextHandle() | BALL::Object | static
getOrder() const | BALL::Bond |
getParent() | BALL::Composite |
getParent() const | BALL::Composite |
getPartner(const Atom &atom) const | BALL::Bond |
getPathLength(const Composite &composite) const | BALL::Composite |
getPrevious(const T &) | BALL::Composite |
getPrevious(const T &dummy) const | BALL::Composite |
getPrevious(const T &) | BALL::Composite |
getPrevious(const T &dummy) const | BALL::Composite |
getProperty(const std::string &name) const | BALL::PropertyManager |
getRoot() | BALL::Composite |
getRoot() const | BALL::Composite |
getSecondAtom() const | BALL::Bond |
getSecondAtom() | BALL::Bond |
getSelectionTime() const | BALL::Composite |
getSibling(Index index) | BALL::Composite |
getSibling(Index index) const | BALL::Composite |
getType() const | BALL::Bond |
hasAncestor(const T &dummy) const | BALL::Composite |
hasAncestor(const T &dummy) const | BALL::Composite |
hasChild() const | BALL::Composite |
hasNextSibling() const | BALL::Composite |
hasParent() const | BALL::Composite |
hasPreviousSibling() const | BALL::Composite |
hasProperty(Property property) const | BALL::PropertyManager |
hasProperty(const std::string &name) const | BALL::PropertyManager |
hasSibling() const | BALL::Composite |
host(Visitor< Composite > &visitor) | BALL::Composite |
insertAfter(Composite &composite) | BALL::Composite |
insertBefore(Composite &composite) | BALL::Composite |
insertParent(Composite &parent, Composite &first, Composite &last, bool destroy_parent=true) | BALL::Composite | static
IS_AROMATIC enum value | BALL::Bond |
isAncestorOf(const Composite &composite) const | BALL::Composite |
isAromatic() const | BALL::Bond |
isAtom() const | BALL::Composite | inline virtual
isAutoDeletable() const | BALL::AutoDeletable |
isBondOf(const Atom &atom) const | BALL::Bond |
isBound() const | BALL::Bond |
isChain() const | BALL::Composite | inline virtual
isChildOf(const Composite &composite) const | BALL::Composite |
isDescendantOf(const Composite &composite) const | BALL::Composite |
isEmpty() const | BALL::Composite |
isFirstChild() const | BALL::Composite |
isFirstChildOf(const Composite &composite) const | BALL::Composite |
isFragment() const | BALL::Composite | inline virtual
isHomomorph(const Composite &composite) const | BALL::Composite |
isInterBond() const | BALL::Bond |
isInterBondOf(const AtomContainer &atom_container) const | BALL::Bond |
isInterior() const | BALL::Composite |
isIntraBond() const | BALL::Bond |
isIntraBondOf(const AtomContainer &atom_container) const | BALL::Bond |
isLastChild() const | BALL::Composite |
isLastChildOf(const Composite &composite) const | BALL::Composite |
isMolecule() const | BALL::Composite | inline virtual
isNextSiblingOf(const Composite &composite) const | BALL::Composite |
isParentOf(const Composite &composite) const | BALL::Composite |
isPreviousSiblingOf(const Composite &composite) const | BALL::Composite |
isProtein() const | BALL::Composite | inline virtual
isRelatedWith(const Composite &composite) const | BALL::Composite |
isResidue() const | BALL::Composite | inline virtual
isRoot() const | BALL::Composite |
isRootOf(const Composite &composite) const | BALL::Composite |
isSelected() const | BALL::Selectable |
isSiblingOf(const Composite &composite) const | BALL::Composite |
isValid() const | BALL::Bond | virtual
KernelPredicateType typedef | BALL::Composite |
MODIFICATION enum value | BALL::Composite |
name_ | BALL::Bond | protected
NUMBER_OF_BOND_ORDERS enum value | BALL::Bond |
NUMBER_OF_BOND_TYPES enum value | BALL::Bond |
NUMBER_OF_PROPERTIES enum value | BALL::Bond |
Object() | BALL::Object |
Object(const Object &object) | BALL::Object |
operator BitVector &() | BALL::PropertyManager |
operator delete(void *ptr) | BALL::AutoDeletable |
operator delete(void *ptr, void *) | BALL::AutoDeletable |
operator new(size_t size) | BALL::AutoDeletable |
operator new(size_t size, void *ptr) | BALL::AutoDeletable |
operator!=(const Bond &bond) const | BALL::Bond |
BALL::Composite::operator!=(const Composite &composite) const | BALL::Composite |
BALL::PersistentObject::operator!=(const Object &object) const | BALL::Object |
BALL::Selectable::operator!=(const Selectable &selectable) const | BALL::Selectable |
BALL::PropertyManager::operator!=(const PropertyManager &pm) const | BALL::PropertyManager |
operator<(const Object &object) const | BALL::Object |
operator<=(const Object &object) const | BALL::Object |
operator=(const Bond &bond) | BALL::Bond |
BALL::Composite::operator=(const Composite &composite) | BALL::Composite |
BALL::PersistentObject::operator=(const Object &) | BALL::Object |
BALL::Selectable::operator=(const Selectable &selectable) | BALL::Selectable |
BALL::PropertyManager::operator=(const PropertyManager &property_manager) | BALL::PropertyManager |
operator==(const Bond &bond) const | BALL::Bond |
BALL::Composite::operator==(const Composite &composite) const | BALL::Composite |
BALL::PersistentObject::operator==(const Object &object) const | BALL::Object |
BALL::Selectable::operator==(const Selectable &selectable) const | BALL::Selectable |
BALL::PropertyManager::operator==(const PropertyManager &pm) const | BALL::PropertyManager |
operator>(const Object &object) const | BALL::Object |
operator>=(const Object &object) const | BALL::Object |
operator>>(PersistenceManager &pm) const | BALL::PersistentObject |
Order typedef | BALL::Bond |
ORDER__ANY enum value | BALL::Bond |
ORDER__AROMATIC enum value | BALL::Bond |
ORDER__DOUBLE enum value | BALL::Bond |
ORDER__QUADRUPLE enum value | BALL::Bond |
ORDER__SINGLE enum value | BALL::Bond |
ORDER__TRIPLE enum value | BALL::Bond |
ORDER__UNKNOWN enum value | BALL::Bond |
PersistentObject() | BALL::PersistentObject | inline
persistentRead(PersistenceManager &pm) | BALL::Bond | virtual
persistentWrite(PersistenceManager &pm, const char *name=0) const | BALL::Bond | virtual
prependChild(Composite &composite) | BALL::Composite |
Property enum name | BALL::Bond |
PropertyManager() | BALL::PropertyManager |
PropertyManager(const PropertyManager &property_manager) | BALL::PropertyManager |
rbeginChildComposite() | BALL::Composite | inline
rbeginChildComposite() const | BALL::Composite | inline
rbeginComposite() | BALL::Composite | inline
rbeginComposite() const | BALL::Composite | inline
BALL::read(PersistenceManager &pm) | BALL::Selectable |
BALL::PropertyManager::read(PersistenceManager &pm) | BALL::PropertyManager |
removeChild(Composite &child) | BALL::Composite |
removeSelected() | BALL::Composite |
removeUnselected() | BALL::Composite |
rendChildComposite() | BALL::Composite | inline
rendChildComposite() const | BALL::Composite | inline
rendComposite() | BALL::Composite | inline
rendComposite() const | BALL::Composite | inline
replace(Composite &composite) | BALL::Composite |
second_ | BALL::Bond | protected
select() | BALL::Composite | virtual
Selectable() | BALL::Selectable |
Selectable(const Selectable &selectable, bool deep=true) | BALL::Selectable |
selected_ | BALL::Selectable | protected
SELECTION enum value | BALL::Composite |
BALL::set(const Composite &composite, bool deep=true) | BALL::Composite |
BALL::Selectable::set(const Selectable &selectable, bool deep=true) | BALL::Selectable |
BALL::PropertyManager::set(const PropertyManager &property_manager) | BALL::PropertyManager |
setAutoDeletable(bool enable) | BALL::AutoDeletable |
setFirstAtom(Atom *atom) | BALL::Bond |
setName(const String &name) | BALL::Bond |
setOrder(Order bond_order) | BALL::Bond |
setProperty(Property property) | BALL::PropertyManager |
setProperty(const NamedProperty &property) | BALL::PropertyManager |
setProperty(const std::string &name) | BALL::PropertyManager |
setProperty(const std::string &name, bool value) | BALL::PropertyManager |
setProperty(const std::string &name, int value) | BALL::PropertyManager |
setProperty(const std::string &name, unsigned int value) | BALL::PropertyManager |
setProperty(const std::string &name, float value) | BALL::PropertyManager |
setProperty(const std::string &name, double value) | BALL::PropertyManager |
setProperty(const std::string &name, const std::string &value) | BALL::PropertyManager |
setProperty(const std::string &name, const PersistentObject &value) | BALL::PropertyManager |
setSecondAtom(Atom *atom) | BALL::Bond |
setSelected(bool selected) | BALL::Selectable | inline virtual
setType(Type bond_type) | BALL::Bond |
splice(Composite &composite) | BALL::Composite |
spliceAfter(Composite &composite) | BALL::Composite |
spliceBefore(Composite &composite) | BALL::Composite |
stamp(StampType stamp=BOTH) | BALL::Composite |
StampType enum name | BALL::Composite |
swap(Bond &bond) | BALL::Bond |
BALL::Composite::swap(Composite &composite) | BALL::Composite |
BALL::Selectable::swap(Selectable &selectable) | BALL::Selectable |
BALL::PropertyManager::swap(PropertyManager &property_manager) | BALL::PropertyManager |
toggleProperty(Property property) | BALL::PropertyManager |
Type typedef | BALL::Bond |
TYPE__COVALENT enum value | BALL::Bond |
TYPE__DISULPHIDE_BRIDGE enum value | BALL::Bond |
TYPE__HYDROGEN enum value | BALL::Bond |
TYPE__PEPTIDE enum value | BALL::Bond |
TYPE__SALT_BRIDGE enum value | BALL::Bond |
TYPE__UNKNOWN enum value | BALL::Bond |
BALL::write(PersistenceManager &pm) const | BALL::Selectable |
BALL::PropertyManager::write(PersistenceManager &pm) const | BALL::PropertyManager |
~AutoDeletable() | BALL::AutoDeletable | virtual
~Bond() | BALL::Bond | virtual
~Composite() | BALL::Composite | virtual
~Object() | BALL::Object | virtual
~PersistentObject() | BALL::PersistentObject | inline virtual
~PropertyManager() | BALL::PropertyManager | virtual
~Selectable() | BALL::Selectable | virtual