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Here is a list of all variables with links to the classes they belong to:

### - r -

- R : BALL::Constant
- r : BALL::FDPB::FastAtomStruct
- r0 : BALL::MMFF94StretchBend::Stretch, BALL::MMFF94StretchParameters::EmpiricalBondData, BALL::QuadraticBondStretch::Values
- r0_ : BALL::QuadraticBondStretch
- r0_normal : BALL::MMFF94StretchParameters::BondData
- r0_sbmb : BALL::MMFF94StretchParameters::BondData
- r_direction_ : BALL::VIEW::LightSource
- R_ij_o_ : BALL::PairExpRDFIntegrator
- r_max_ : BALL::ReducedSurface
- r_min : BALL::CharmmEEF1::Values
- R_min_ : BALL::CharmmEEF1
- r_position_ : BALL::VIEW::LightSource
- RAD_PER_DEG : BALL::Constant
- radii : BALL::MMFF94StretchParameters
- radii_ : BALL::ElectrostaticPotentialCalculator
- radius : BALL::JohnsonBoveyShiftProcessor::Ring, BALL::SolventAtomDescriptor, BALL::TCircle3< T >, BALL::TSphere3< T >
- radius_ : BALL::Atom, BALL::VIEW::HBondModelProcessor
- radius_a_ : BALL::GeometricFit
- radius_b_ : BALL::GeometricFit
- RADIUS_CARBON : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- radius_factor_ : BALL::VIEW::AddVanDerWaalsModel
- RADIUS_HYDROGEN : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- RADIUS_NITROGEN : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- radius_of_torus_ : BALL::RSEdge
- radius_offset_ : BALL::SurfaceProcessor
- RADIUS_OXYGEN : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- radius_processor_ : BALL::VIEW::FDPBDialog
- radius_rule_processor_ : BALL::VIEW::FDPBDialog
- RADIUS_SULFUR : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- rank_ : BALL::MPISupport
- rb_ : BALL::DockProblem, BALL::VIEW::Scene
- rdf_ : BALL::RDFIntegrator, BALL::RDFSection
- RDF_FILENAME : BALL::Pair6_12InteractionEnergyProcessor::Default, BALL::Pair6_12InteractionEnergyProcessor::Option, BALL::PairExpInteractionEnergyProcessor::Default, BALL::PairExpInteractionEnergyProcessor::Option
- rdf_indices_ : BALL::RDFParameter
- rdf_integrator_ : BALL::Pair6_12InteractionEnergyProcessor
- rdf_list_ : BALL::RDFParameter
- rdf_parameter_ : BALL::Pair6_12InteractionEnergyProcessor, BALL::PairExpInteractionEnergyProcessor
- reacting_center_status : BALL::MOLFile::BondStruct
- reaction_component_number : BALL::MOLFile::AtomStruct
- reaction_component_type : BALL::MOLFile::AtomStruct
- reaction_field_energy_ : BALL::FDPB
- read_all_pdb_models_ : BALL::VIEW::MolecularFileDialog
- read_atoms_ : BALL::SDFile
- read_done_ : BALL::PDBFile
- read_sd_descriptors : BALL::QSAR::InputConfiguration
- read_start_ : BALL::GAFFCESParser
- REAL : BALL::RegularExpression
- real_renderer_ : BALL::VIEW::TilingRenderer
- rebuild_ : BALL::VIEW::Representation
- rec : BALL::IMGDock
- rec_edges_ : BALL::SmartsParser
- rec_matches_ : BALL::SmartsMatcher
- receive_updates_ : BALL::VIEW::RenderSetup
- received_composite_ : BALL::VIEW::ServerWidget::BALLViewServer
- receptor_ : BALL::DockingAlgorithm, BALL::ScoringFunction
- receptor_atoms_ : BALL::PB
- recieve_buffer : BALL::RingPerceptionProcessor::TNode_
- record_animation_action_ : BALL::VIEW::Scene
- record_fields_ : BALL::PDBFile
- record_name : BALL::PDB::RecordANISOU, BALL::PDB::RecordATOM, BALL::PDB::RecordAUTHOR, BALL::PDB::RecordCAVEAT, BALL::PDB::RecordCISPEP, BALL::PDB::RecordCOMPND, BALL::PDB::RecordCON061, BALL::PDB::RecordCON062, BALL::PDB::RecordCON063, BALL::PDB::RecordCON064, BALL::PDB::RecordCON06, BALL::PDB::RecordCONECT, BALL::PDB::RecordCRYST1, BALL::PDB::RecordDBREF, BALL::PDB::RecordEND, BALL::PDB::RecordENDMDL, BALL::PDB::RecordEXPDTA, BALL::PDB::RecordFORMUL, BALL::PDB::RecordFTNOTE, BALL::PDB::RecordHEADER, BALL::PDB::RecordHELIX, BALL::PDB::RecordHET, BALL::PDB::RecordHETATM, BALL::PDB::RecordHETNAM, BALL::PDB::RecordHETSYN, BALL::PDB::RecordHYDBND, BALL::PDB::RecordJRNL, BALL::PDB::RecordKEYWDS, BALL::PDB::RecordLINK, BALL::PDB::RecordMASTER, BALL::PDB::RecordMODEL, BALL::PDB::RecordMODRES, BALL::PDB::RecordMTRIX1, BALL::PDB::RecordMTRIX2, BALL::PDB::RecordMTRIX3, BALL::PDB::RecordOBSLTE, BALL::PDB::RecordORIGX1, BALL::PDB::RecordORIGX2, BALL::PDB::RecordORIGX3, BALL::PDB::RecordREMARK, BALL::PDB::RecordREVDAT, BALL::PDB::RecordSCALE1, BALL::PDB::RecordSCALE2, BALL::PDB::RecordSCALE3, BALL::PDB::RecordSEQADV, BALL::PDB::RecordSEQRES, BALL::PDB::RecordSHEET, BALL::PDB::RecordSIGATM, BALL::PDB::RecordSIGUIJ, BALL::PDB::RecordSITE, BALL::PDB::RecordSLTBRG, BALL::PDB::RecordSOURCE, BALL::PDB::RecordSPRSDE, BALL::PDB::RecordSSBOND, BALL::PDB::RecordTER, BALL::PDB::RecordTITLE, BALL::PDB::RecordTURN, BALL::PDB::RecordTVECT
- record_serial_number : BALL::PDB::RecordCISPEP
- record_type : BALL::PDB::RecordANISOU, BALL::PDB::RecordATOM, BALL::PDB::RecordAUTHOR, BALL::PDB::RecordCAVEAT, BALL::PDB::RecordCISPEP, BALL::PDB::RecordCOMPND, BALL::PDB::RecordCON061, BALL::PDB::RecordCON062, BALL::PDB::RecordCON063, BALL::PDB::RecordCON064, BALL::PDB::RecordCON06, BALL::PDB::RecordCONECT, BALL::PDB::RecordCRYST1, BALL::PDB::RecordDBREF, BALL::PDB::RecordEND, BALL::PDB::RecordENDMDL, BALL::PDB::RecordEXPDTA, BALL::PDB::RecordFORMUL, BALL::PDB::RecordFTNOTE, BALL::PDB::RecordHEADER, BALL::PDB::RecordHELIX, BALL::PDB::RecordHET, BALL::PDB::RecordHETATM, BALL::PDB::RecordHETNAM, BALL::PDB::RecordHETSYN, BALL::PDB::RecordHYDBND, BALL::PDB::RecordJRNL, BALL::PDB::RecordKEYWDS, BALL::PDB::RecordLINK, BALL::PDB::RecordMASTER, BALL::PDB::RecordMODEL, BALL::PDB::RecordMODRES, BALL::PDB::RecordMTRIX1, BALL::PDB::RecordMTRIX2, BALL::PDB::RecordMTRIX3, BALL::PDB::RecordOBSLTE, BALL::PDB::RecordORIGX1, BALL::PDB::RecordORIGX2, BALL::PDB::RecordORIGX3, BALL::PDB::RecordREMARK, BALL::PDB::RecordREVDAT, BALL::PDB::RecordSCALE1, BALL::PDB::RecordSCALE2, BALL::PDB::RecordSCALE3, BALL::PDB::RecordSEQADV, BALL::PDB::RecordSEQRES, BALL::PDB::RecordSHEET, BALL::PDB::RecordSIGATM, BALL::PDB::RecordSIGUIJ, BALL::PDB::RecordSITE, BALL::PDB::RecordSLTBRG, BALL::PDB::RecordSOURCE, BALL::PDB::RecordSPRSDE, BALL::PDB::RecordSSBOND, BALL::PDB::RecordTER, BALL::PDB::RecordTITLE, BALL::PDB::RecordTURN, BALL::PDB::RecordTVECT, BALL::PDB::RecordTypeFormat
- recording_ : BALL::VIEW::TestFramework
- records_ : BALL::PDBRecords
- recursive_ : BALL::SmartsParser, BALL::SmartsParser::SPNode
- redraw_ : BALL::DockProblem
- redraw_queue_ : BALL::SDGenerator
- reduced_surface_ : BALL::SolventAccessibleSurface, BALL::SolventExcludedSurface
- REESTIMATE_BONDORDERS_RINGS : BALL::BuildBondsProcessor::Default, BALL::BuildBondsProcessor::Option
- refArea_penalties : BALL::ScoringFunction::Result
- reference : BALL::NMRStarFile::NMRAtomDataSet
- reference_center_ : BALL::EvolutionaryDocking
- reference_composite_ : BALL::FragmentDistanceCollector
- reference_interactions : BALL::ScoreGridSet
- reference_ligand_ : BALL::DockingAlgorithm
- reference_method : BALL::NMRStarFile::ShiftReferenceElement
- reference_neighbors_ : BALL::ScoringFunction
- REFERENCE_TEMPERATURE : BALL::MolecularDynamics::Default, BALL::MolecularDynamics::Option
- reference_temperature_ : BALL::MolecularDynamics
- reference_type : BALL::NMRStarFile::ShiftReferenceElement
- reflective_color : BALL::VIEW::Stage::Material
- reflective_intensity : BALL::VIEW::Stage::Material
- reg3D_grid_names_ : BALL::Rescoring3D
- register_ : BALL::VIEW::RegisterHelpSystemMessage
- registered_at_ : BALL::LogStreamNotifier
- registered_modules_ : BALL::ShiftModel
- registered_objects_ : BALL::VIEW::PreferencesEntry
- regression : BALL::QSAR::RegistryEntry
- related_database_entries : BALL::NMRStarFile::MolecularSystem
- relation_type : BALL::NMRStarFile::MolecularSystem::RelatedDB
- relative_ : BALL::VIEW::LightSource
- RELEASE_DATE_AND_TIME : BALL::VersionInfo
- RELEASE_WHAT_STRING : BALL::VersionInfo
- remark_number : BALL::PDB::RecordREMARK
- remark_records : BALL::PDB::BookKeeping
- remove_correlated : BALL::QSAR::FeatureSelectionConfiguration
- render_mode_ : BALL::VIEW::GLRenderer
- render_mutex_ : BALL::VIEW::RenderSetup
- render_timer_ : BALL::VIEW::MainControl
- renderer : BALL::VIEW::RenderSetup
- renderer_ : BALL::VIEW::RenderToBufferFinishedEvent
- renderer_type_ : BALL::VIEW::RenderSetup
- renderers_ : BALL::VIEW::Scene
- rendering_paused_ : BALL::VIEW::RenderSetup
- rep_ : BALL::VIEW::DisplayProperties, BALL::VIEW::ModifyRepresentationDialog, BALL::VIEW::UpdateRepresentationThread
- rep_label_ : BALL::VIEW::MainControl
- rep_label_delta_ : BALL::VIEW::MainControl
- rep_label_nr_ : BALL::VIEW::MainControl
- rep_to_buffers_ : BALL::VIEW::GLRenderer
- replacing_entry_code : BALL::PDB::RecordOBSLTE
- reply_ : BALL::SimpleDownloaderHelper::BasicHelper
- representation_ : BALL::RadialDistributionFunction
- representation_to_item_ : BALL::VIEW::GeometricControl
- representations_ : BALL::VIEW::POVRenderer, BALL::VIEW::RepresentationManager, BALL::VIEW::XML3DRenderer
- reps : BALL::VIEW::ExportGeometryDialog
- reps_ : BALL::VIEW::ClippingPlane
- res : BALL::HBondProcessor::ResidueData
- residue : BALL::PDB::RecordANISOU, BALL::PDB::RecordATOM, BALL::PDB::RecordCISPEP, BALL::PDB::RecordHET, BALL::PDB::RecordHETATM, BALL::PDB::RecordHYDBND::HydrogenAtom, BALL::PDB::RecordHYDBND::HydrogenPartnerAtom, BALL::PDB::RecordLINK::LinkPartner, BALL::PDB::RecordMODRES, BALL::PDB::RecordSEQADV, BALL::PDB::RecordSIGATM, BALL::PDB::RecordSIGUIJ, BALL::PDB::RecordSITE, BALL::PDB::RecordSLTBRG::PartnerAtom, BALL::PDB::RecordTER, BALL::PDB::Structure::AtomEntry
- residue_data_ : BALL::HBondProcessor
- residue_id : BALL::PDB::AdditionalAtomInfo
- residue_in_current_strand : BALL::PDB::RecordSHEET
- residue_in_previous_strand : BALL::PDB::RecordSHEET
- residue_insertion_code : BALL::PDB::AdditionalAtomInfo
- residue_label : BALL::NMRStarFile::NMRAtomData
- residue_map_ : BALL::PDBFile, BALL::VIEW::ResidueNumberColorProcessor
- residue_name : BALL::PDB::AdditionalAtomInfo, BALL::PDB::RecordSEQRES, BALL::ResidueTorsions::Data
- residue_name_ : BALL::PDBFile
- residue_ptr_to_position_ : BALL::HBondProcessor
- residue_seq_code : BALL::NMRStarFile::NMRAtomData
- residue_sequence : BALL::NMRStarFile::MonomericPolymer
- residue_sequence_number_ : BALL::PDBFile
- residues : BALL::VIEW::AddBackboneModel::ModelPart
- residues_by_index : BALL::NMRStarFile::MonomericPolymer
- residues_to_be_rendered_ : BALL::VIEW::AddBackboneModel
- residues_with_rings_ : BALL::JohnsonBoveyShiftProcessor
- resize_to_parent_ : BALL::VIEW::SDWidget
- resolution_ : BALL::GridAnalysis, BALL::Rescoring3D, BALL::ScoringFunction
- restart_ : BALL::TCPServer
- restart_frequency_ : BALL::ConjugateGradientMinimizer
- result_ : BALL::RombergIntegrator< Function, DataType >, BALL::ScoringFunction, BALL::SimpleDownloaderHelper::HelperThread
- result_data_ : BALL::Result
- result_output_data_ : BALL::Result
- results : BALL::FDPB
- results_ : BALL::VIEW::PyWidget
- return_stack_ : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- RGB_24 : BALL::VIEW::PixelFormat
- RGB_32 : BALL::VIEW::PixelFormat
- RGB_3_2_2 : BALL::VIEW::PixelFormat
- RGBA_32 : BALL::VIEW::PixelFormat
- RGBF_96 : BALL::VIEW::PixelFormat
- rho_ : BALL::StrangLBFGSMinimizer
- RHO_0 : BALL::GeneralizedBornModel::Default, BALL::GeneralizedBornModel::Option
- ribbon_height_ : BALL::VIEW::AddBackboneModel
- ribbon_mode_ : BALL::VIEW::AddBackboneModel
- ribbon_radius_ : BALL::VIEW::AddCartoonModel
- ribbon_width_ : BALL::VIEW::AddBackboneModel, BALL::VIEW::AddCartoonModel
- right_ : BALL::VIEW::GLRenderer
- right_vector_ : BALL::TBox3< T >, BALL::VIEW::Camera
- rij : BALL::MMFF94NonBonded::NonBondedPairData
- rij_ : BALL::MMFF94VDWParameters
- rij_7 : BALL::MMFF94NonBonded::NonBondedPairData
- rij_7_ : BALL::MMFF94VDWParameters
- ring_analyser_ : BALL::SDGenerator
- ring_atoms_ : BALL::HaighMallionShiftProcessor, BALL::VIEW::AtomBondModelBaseProcessor
- ring_connections_ : BALL::SmartsParser
- ring_proc_ : BALL::SMARTSPredicate
- ring_systems_ : BALL::RingAnalyser
- rings_ : BALL::AtomTyper, BALL::JohnsonBoveyShiftProcessor, BALL::Kekuliser, BALL::MMFF94, BALL::RingAnalyser, BALL::RingPerceptionProcessor, BALL::VIEW::AtomBondModelBaseProcessor
- rings_per_bond_ : BALL::RingAnalyser
- rl_thread_ : BALL::VIEW::MolecularControl
- rm_vertices_ : BALL::RSComputer
- rms : BALL::Gradient
- RMS_CRITERION : BALL::FDPB::Default, BALL::FDPB::Option
- rmsd_ : BALL::StructureMapper
- RMSD_LEVEL_OF_DETAIL : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- rmsd_level_of_detail_ : BALL::PoseClustering
- RMSD_TYPE : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- rng_ : BALL::GeneticAlgorithm
- root : BALL::GAFFCESParser
- root_ : BALL::SmartsParser, BALL::TreeWidthImplementation< UndirectedGraph >::TreeDecompositionBuilder< OriginalGraphType >, BALL::VIEW::AssignBondOrderResultsDialog
- root_atom : BALL::MOL2File::SubstructureStruct
- root_predicate : BALL::GAFFCESParser
- rotamer_library_ : BALL::VIEW::MolecularControl
- rotamer_library_mutex_ : BALL::VIEW::MolecularControl
- rotamer_mapper_ : BALL::VIEW::MolecularControl
- rotamer_menu_ : BALL::VIEW::MolecularControl
- rotamers_ : BALL::ResidueRotamerSet
- rotatable_ligand_bonds_ : BALL::ScoringFunction
- rotation : BALL::PoseClustering::RigidTransformation
- rotation_ : BALL::VIEW::POVRenderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- row_ : BALL::VIEW::AtomOverview::ApplyProcessor
- row_axis_ : BALL::CCP4File
- rs_ : BALL::MMFF94VDWParameters, BALL::RSComputer
- rsedge_ : BALL::SESEdge, BALL::SESFace
- rsface_ : BALL::SESFace
- rsvertex_ : BALL::SESFace
- rt_contour_surface_dialog_ : BALL::VIEW::RaytraceableGridController
- rt_material_ : BALL::VIEW::XML3DRenderer
- rule_map_ : BALL::RuleEvaluator
- rule_times : BALL::AtomTyper
- rule_types_ : BALL::MMFF94ChargeProcessor
- rules_ : BALL::AtomTyper
- RUN_PARALLEL : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- run_test : BALL::VIEW::TestFramework
- running_ : BALL::VIEW::PyWidget
- running_plugins_ : BALL::PluginHandler
- runtime_ : BALL::VIEW::TestFramework