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Here is a list of all variables with links to the classes they belong to:

### - c -

- c : BALL::Constant, BALL::PDB::RecordCRYST1::UnitCell, BALL::PDB::Structure::UnitCellInfo, BALL::SortedPosition3
- C1 : BALL::PairExpInteractionEnergyProcessor::Default, BALL::PairExpInteractionEnergyProcessor::Option
- C1_ : BALL::PairExpInteractionEnergyProcessor, BALL::PairExpRDFIntegrator
- C2 : BALL::PairExpInteractionEnergyProcessor::Default, BALL::PairExpInteractionEnergyProcessor::Option
- C2_ : BALL::PairExpInteractionEnergyProcessor, BALL::PairExpRDFIntegrator
- CAL_PER_JOULE : BALL::Constant
- calculated_ : BALL::MMFF94VDWParameters
- call_time_map_ : BALL::SMARTSPredicate
- caller_ : BALL::SimpleDownloaderHelper::BasicHelper
- camera : BALL::VIEW::SetCamera
- camera_ : BALL::VIEW::Renderer, BALL::VIEW::RenderSetup, BALL::VIEW::Stage
- camera_offset_ : BALL::VIEW::Renderer, BALL::VIEW::RenderSetup
- cancel_ : BALL::VIEW::SnapshotVisualisationDialog
- cancel_animation_action_ : BALL::VIEW::Scene
- cap_ : BALL::VIEW::ClippingPlane
- capping_color_ : BALL::VIEW::ClippingPlane
- carbonyl_influences_amide_field_ : BALL::EFShiftProcessor
- care_for_SS_ : BALL::VIEW::AddBackboneModel
- cart2frac_ : BALL::CrystalInfo
- category : BALL::CIFFile::SaveFrame, BALL::ParamFile::ParameterDescription
- cation : BALL::MMFF94AtomTyper::AromaticType
- cation_atoms_ : BALL::MMFF94AtomTyper
- cel_texture_ : BALL::VIEW::GLRenderer
- cell_dimension_ : BALL::CCP4File
- cell_dimensions_ : BALL::CrystalInfo
- cell_scaling_ : BALL::DSN6File
- center : BALL::PoseClustering::ClusterProperties, BALL::StaticLigandFragment
- center_ : BALL::GridAnalysis, BALL::RSFace, BALL::VIEW::LabelModel
- center_camera_action_ : BALL::VIEW::MolecularControl
- center_data : BALL::QSAR::InputConfiguration
- center_of_torus_ : BALL::RSEdge
- center_processor_ : BALL::CrystalGenerator, BALL::VIEW::LabelModel
- center_y : BALL::QSAR::InputConfiguration
- central_moments : BALL::Spectrum< DataT, PeakT, PositionT >
- ces_parsers_ : BALL::GAFFTypeProcessor
- cesstring_ : BALL::GAFFCESParser
- chain : BALL::MOL2File::SubstructureStruct, BALL::PDB::Structure::AtomEntry
- chain_ : BALL::NMRStarFile::BALLToBMRBMapper
- chain_ID : BALL::PDB::RecordDBREF, BALL::PDB::RecordSEQRES, BALL::PDB::Residue
- chain_id : BALL::PDB::AdditionalAtomInfo
- chain_ID_ : BALL::PDBFile
- chain_residue_names : BALL::PDB::Structure
- chainname_ : BALL::Peptides::PeptideBuilder
- chains_ : BALL::SDGenerator
- change_charge_ : BALL::VIEW::EditMode
- changed_color_processor_ : BALL::VIEW::Representation
- changed_selection_color_ : BALL::VIEW::DisplayProperties
- char_count : BALL::ExpressionParser::State, BALL::SmartsParser::State, BALL::SmilesParser::State
- CHARACTER_CLASS__ASCII_ALPHA : BALL::String
- CHARACTER_CLASS__ASCII_ALPHANUMERIC : BALL::String
- CHARACTER_CLASS__ASCII_FLOAT : BALL::String
- CHARACTER_CLASS__ASCII_LOWER : BALL::String
- CHARACTER_CLASS__ASCII_NUMERIC : BALL::String
- CHARACTER_CLASS__ASCII_UPPER : BALL::String
- CHARACTER_CLASS__QUOTES : BALL::String
- CHARACTER_CLASS__WHITESPACE : BALL::String
- CharBits : BALL::BitVector
- charge : BALL::MOL2File::AtomStruct, BALL::MOLFile::AtomStruct, BALL::PDB::RecordANISOU, BALL::PDB::RecordATOM, BALL::PDB::RecordHETATM, BALL::PDB::RecordSIGATM, BALL::PDB::RecordSIGUIJ
- charge_ : BALL::Atom
- CHARGE_DISTRIBUTION : BALL::FDPB::Default, BALL::FDPB::Option
- charge_factor_ : BALL::EFShiftProcessor
- charge_map_ : BALL::EFShiftProcessor
- charge_menu_ : BALL::VIEW::EditMode
- charge_processor_ : BALL::MMFF94, BALL::VIEW::FDPBDialog
- charge_rule_processor_ : BALL::VIEW::FDPBDialog
- charge_type : BALL::MOL2File::MoleculeStruct
- charges_ : BALL::ElectrostaticPotentialCalculator, BALL::HMOFile, BALL::Templates
- charmm_extra_block_A_ : BALL::DCDFile
- charmm_extra_block_B_ : BALL::DCDFile
- CHECK_AFTER_ITERATIONS : BALL::FDPB::Default, BALL::FDPB::Option
- check_applicability_ : BALL::Rescoring
- check_duplicate_keys_ : BALL::INIFile
- checkable_ : BALL::VIEW::GenericControl
- chemical_environment : BALL::GAFFTypeProcessor::TypeDefinition
- chemical_formula : BALL::PDB::RecordFORMUL
- chemical_name : BALL::PDB::RecordHETNAM
- chemical_units : BALL::NMRStarFile::MolecularSystem
- chi1 : BALL::Rotamer
- chi2 : BALL::Rotamer
- chi3 : BALL::Rotamer
- chi4 : BALL::Rotamer
- children : BALL::ExpressionParser::SyntaxTree, BALL::GAFFCESParser::CESPredicate
- children_ : BALL::ExpressionTree
- chiral : BALL::MOLFile::CountsStruct
- chiral_class_value : BALL::SmartsParser::SPAtom::PropertyValue
- chirality_ : BALL::SmilesParser::SPAtom
- CHOOSE_MODEL : BALL::PDBFile::Default, BALL::PDBFile::Option
- CHPI : BALL::SLICKEnergy::Default, BALL::SLICKEnergy::Option, BALL::SLICKScore::Default, BALL::SLICKScore::Option
- CHX_ANGLE_LOWER : BALL::CHPI::Default, BALL::CHPI::Option, BALL::CHPISlick::Default, BALL::CHPISlick::Option
- ci_ptr_ : BALL::CrystalGenerator
- circle0_ : BALL::RSEdge
- circle1_ : BALL::RSEdge
- circle_ : BALL::SASEdge, BALL::SESEdge
- CLASH_FACTOR : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- class_ : BALL::VIEW::PyWidget
- class_names_ : BALL::QSAR::QSARData
- classes_to_files_ : BALL::VIEW::HelpViewer
- classification : BALL::PDB::RecordHEADER
- CLAVERIE_FILENAME : BALL::PairExpInteractionEnergyProcessor::Default, BALL::PairExpInteractionEnergyProcessor::Option
- clear_animation_action_ : BALL::VIEW::Scene
- clear_selection_action_ : BALL::VIEW::MainControl
- clipboard_id_ : BALL::VIEW::MolecularControl
- clipping_plane_ : BALL::VIEW::ClippingDialog
- clipping_plane_context_menu_ : BALL::VIEW::GeometricControl
- clipping_planes_ : BALL::VIEW::POVRenderer, BALL::VIEW::RepresentationManager, BALL::VIEW::XML3DRenderer
- CLUSTER_METHOD : BALL::PoseClustering::Default, BALL::PoseClustering::Option
- cluster_representatives_ : BALL::PoseClustering
- cluster_scores_ : BALL::PoseClustering
- cluster_tree_ : BALL::PoseClustering, BALL::PoseClustering::ClusterTreeNodeComparator, BALL::PoseClustering::ClusterTreeWriter_
- clusters_ : BALL::PoseClustering
- cm_ : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >, BALL::VIEW::ColorByGridProcessor
- code_ : BALL::PDBFile
- coefficient_ : BALL::ScoringComponent
- coefficients_ : BALL::PiecewiseFunction
- col_axis_ : BALL::CCP4File
- col_buffer_ : BALL::LineBasedFile
- color_ : BALL::VIEW::LabelModel, BALL::VIEW::LightSource, BALL::VIEW::MeshBuffer
- color_index_ : BALL::VIEW::POVRenderer, BALL::VIEW::XML3DRenderer
- color_map_ : BALL::VIEW::ElementColorProcessor, BALL::VIEW::POVRenderer, BALL::VIEW::ResidueNameColorProcessor, BALL::VIEW::XML3DRenderer
- color_menu_ : BALL::VIEW::MolecularControl
- color_number_ : BALL::VIEW::ColorMap
- color_processor_ : BALL::VIEW::Representation
- color_strings_ : BALL::VIEW::POVRenderer, BALL::VIEW::XML3DRenderer
- coloring_method_ : BALL::VIEW::Representation
- coloring_settings_ : BALL::VIEW::DisplayProperties
- coloring_update_enabled_ : BALL::VIEW::Representation
- colors : BALL::VIEW::MultiColorExtension
- colors_ : BALL::VIEW::InterpolateColorProcessor, BALL::VIEW::PositionColorProcessor
- column_names_ : BALL::QSAR::QSARData
- com_ : BALL::PoseClustering
- combine_operation_ : BALL::GridBasedScoring
- combiner_ : BALL::FPTBondOrderStrategy
- combo_box_ : BALL::VIEW::PyWidget
- comm_size_ : BALL::MPISupport
- comment : BALL::MOL2File::MoleculeStruct, BALL::MOL2File::SetStruct, BALL::MOL2File::SubstructureStruct, BALL::PDB::RecordCAVEAT, BALL::PDB::RecordHELIX, BALL::PDB::RecordMODRES, BALL::PDB::RecordSEQADV, BALL::PDB::RecordTURN, BALL::PDB::RecordTVECT, BALL::VIEW::Hotkey
- comment_format : BALL::VIEW::PythonHighlighter
- comment_pattern : BALL::VIEW::PythonHighlighter
- comments_ : BALL::HMOFile, BALL::MOL2File
- common_name : BALL::NMRStarFile::MonomericPolymer
- compare_record_type_format_ : BALL::PDBFile
- complement_selection_action_ : BALL::VIEW::MainControl
- complementary_bases_ : BALL::VIEW::AddCartoonModel
- complete_prefix_ : BALL::VIEW::PyWidget
- complex_atoms_ : BALL::PB
- component_ : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >
- component_description : BALL::PDB::RecordCOMPND
- component_grouping_ : BALL::SmartsParser
- component_name : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
- component_no_ : BALL::SmartsParser, BALL::SmartsParser::SPNode
- component_number : BALL::PDB::RecordFORMUL
- component_solutions_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- components : BALL::NMRStarFile::Sample
- components_ : BALL::ComposedEnergyProcessor, BALL::ConnectedComponentsProcessor, BALL::ForceField, BALL::TreeWidth< UndirectedGraph >
- composite_ : BALL::VIEW::BALLThread, BALL::VIEW::CompositeMessage, BALL::VIEW::Dataset
- composite_hashmap_ : BALL::VIEW::ServerWidget::BALLViewServer
- composite_iterator_ : BALL::CompositeIteratorTraits
- composite_manager_ : BALL::VIEW::MainControl
- composite_name_ : BALL::VIEW::CompositeMessage
- composite_properties_action_ : BALL::VIEW::MolecularControl
- composite_to_item_ : BALL::VIEW::MolecularControl
- composite_to_position_ : BALL::VIEW::PositionColorProcessor
- composites_ : BALL::VIEW::ColorProcessor, BALL::VIEW::Representation
- composites_locked_ : BALL::VIEW::MainControl
- composites_locked_mutex_ : BALL::VIEW::MainControl
- compress_output_ : BALL::GenericMolFile
- COMPUTE_ALSO_CONNECTIVITY : BALL::AssignBondOrderProcessor::Default, BALL::AssignBondOrderProcessor::Option
- compute_also_connectivity_ : BALL::AssignBondOrderProcessor
- COMPUTE_ALSO_NON_OPTIMAL_SOLUTIONS : BALL::AssignBondOrderProcessor::Default, BALL::AssignBondOrderProcessor::Option
- compute_also_non_optimal_solutions_ : BALL::AssignBondOrderProcessor
- COMPUTE_AREA : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- compute_shifts_ : BALL::ShiftModel1D, BALL::ShiftModel2D
- COMPUTE_SURFACE : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- COMPUTE_SURFACE_MAP : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- COMPUTE_SURFACE_PER_ATOM : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- COMPUTE_VOLUME : BALL::NumericalSAS::Default, BALL::NumericalSAS::Option
- computing_data_ : BALL::FPTBondOrderStrategy
- concentration_max : BALL::NMRStarFile::Sample::Component
- concentration_min : BALL::NMRStarFile::Sample::Component
- concentration_value : BALL::NMRStarFile::Sample::Component
- condition : BALL::NMRStarFile::NMRAtomDataSet
- conect_atoms : BALL::PDB::Structure
- conect_records : BALL::PDB::BookKeeping
- conf_ids_ : BALL::FlexibleMolecule
- config : BALL::FPTBondOrderStrategy::BackTrackingState_
- CONFORMATION_SCALE : BALL::ScoringFunction::Default, BALL::ScoringFunction::Option
- conformation_scale_ : BALL::ScoringFunction
- conformation_set_ : BALL::DockResult, BALL::VIEW::DockingFinishedMessage
- conformations : BALL::FlexibleMolecule
- connect_to : BALL::FragmentDB::BuildBondsProcessor::Connection
- connected_stream_ : BALL::TCPServer
- connections : BALL::StaticLigandFragment
- connections_ : BALL::FragmentDB::BuildBondsProcessor, BALL::SmilesParser
- connectivity : BALL::GAFFTypeProcessor::TypeDefinition
- CONNECTIVITY_CUTOFF : BALL::AssignBondOrderProcessor::Default, BALL::AssignBondOrderProcessor::Option
- CONST : BALL::SLICKEnergy::Default, BALL::SLICKEnergy::Option, BALL::SLICKScore::Default, BALL::SLICKScore::Option
- const_penalty_ : BALL::ILPBondOrderStrategy
- CONSTANT : BALL::UhligCavFreeEnergyProcessor::Default, BALL::UhligCavFreeEnergyProcessor::Option
- constant_ : BALL::MutableConstant< DataType >
- constants_ : BALL::ParsedFunction< arg >
- constraints : BALL::ScoringFunction
- consumed_valences : BALL::FPTBondOrderStrategy::DPConfig_
- contact_faces_ : BALL::SolventExcludedSurface
- container_ : BALL::Enumerator< Container, SiteIterator, Variant >, BALL::VIEW::DockWidget
- contex_mutex_ : BALL::VIEW::GLRenderWindow
- context_composite_ : BALL::VIEW::MolecularControl
- context_item_ : BALL::VIEW::GenericControl, BALL::VIEW::MolecularControl
- context_menu_ : BALL::VIEW::GeometricControl, BALL::VIEW::MolecularControl
- context_menu_actions_ : BALL::VIEW::GeometricControl
- context_plane_ : BALL::VIEW::GeometricControl
- context_representation_ : BALL::VIEW::GeometricControl
- continuation : BALL::PDB::RecordAUTHOR, BALL::PDB::RecordCAVEAT, BALL::PDB::RecordCOMPND, BALL::PDB::RecordEXPDTA, BALL::PDB::RecordHETNAM, BALL::PDB::RecordHETSYN, BALL::PDB::RecordKEYWDS, BALL::PDB::RecordOBSLTE, BALL::PDB::RecordREVDAT, BALL::PDB::RecordSOURCE, BALL::PDB::RecordSPRSDE, BALL::PDB::RecordTITLE
- continuation_number : BALL::PDB::RecordFORMUL
- CONTINUED_LINE : BALL::KCFFile
- control_ : BALL::VIEW::DatasetController
- control_selection_ : BALL::VIEW::MainControl
- controller_ : BALL::VIEW::GridVisualizationDialog
- controllers_ : BALL::VIEW::DatasetControl
- CONV_ITERATIONS : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- CONV_START : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- conv_start_ : BALL::GeneticAlgorithm
- CONV_VALUE : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- conventions_ : BALL::Peptides::NameConverter
- conversion_table_ : BALL::Peptides::NameConverter
- convert_ : BALL::Rescoring
- coordinate_transformation_records : BALL::PDB::BookKeeping
- copy_id_ : BALL::VIEW::MolecularControl
- copy_list_ : BALL::VIEW::MolecularControl
- cor_threshold : BALL::QSAR::FeatureSelectionConfiguration
- CORD_ : BALL::DCDFile
- corr_par_ : BALL::ShiftedLVMMMinimizer
- correct_CA_shifts_ : BALL::HaighMallionShiftProcessor
- CORRECTION_PARAMETER : BALL::ShiftedLVMMMinimizer::Default, BALL::ShiftedLVMMMinimizer::Option
- COULOMB : BALL::FDPB::Boundary
- count_items_action_ : BALL::VIEW::MolecularControl
- counts_format_ : BALL::MOLFile
- covariance_matrix_ : BALL::PoseClustering
- Cp_ref : BALL::CharmmEEF1::Values
- Cp_ref_ : BALL::CharmmEEF1
- crd : BALL::MMFF94AtomType
- create : BALL::QSAR::RegistryEntry
- create_button_ : BALL::VIEW::DisplayProperties
- create_coordinate_system_ : BALL::VIEW::Scene
- CREATE_INTERACTION_FILE : BALL::CHPI::Default, BALL::CHPI::Option, BALL::CHPISlick::Default, BALL::CHPISlick::Option
- CREATE_INTERACTIONS_FILE : BALL::Lipophilic::Default, BALL::Lipophilic::Option
- create_methods_ : BALL::Expression, BALL::PersistenceManager
- create_mutex_ : BALL::VIEW::UIOperationMode
- create_representations_for_new_molecules_ : BALL::VIEW::DisplayProperties
- create_XHTML_ : BALL::VIEW::XML3DRenderer
- created_temp_filenames_ : BALL::File
- createKernel1 : BALL::QSAR::RegistryEntry
- createKernel2 : BALL::QSAR::RegistryEntry
- creating_representations_ : BALL::VIEW::GeometricControl
- crystal_dimension_ : BALL::DSN6File
- csv_compound_labels : BALL::QSAR::InputConfiguration
- csv_desc_labels : BALL::QSAR::InputConfiguration
- csv_file : BALL::QSAR::InputConfiguration
- csv_no_response : BALL::QSAR::InputConfiguration
- csv_separator : BALL::QSAR::InputConfiguration
- curr_modifying_ : BALL::VIEW::PyWidget
- curr_num_of_vect_pairs_ : BALL::StrangLBFGSMinimizer
- curr_number_of_cols_ : BALL::ShiftedLVMMMinimizer
- current_aps_type : BALL::GAFFCESParser::State
- current_aromatic_system_ : BALL::Kekuliser
- current_atom : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_, BALL::GAMESSLogFile
- current_atom_ : BALL::VIEW::Scene
- current_block_ : BALL::GAMESSDatFile
- current_bond_ : BALL::VIEW::Scene
- current_chain : BALL::PDB::AdditionalAtomInfo
- current_chain_ : BALL::PDBFile
- current_coefficient_line : BALL::GAMESSLogFile
- current_const_atom_ : BALL::PDBFile
- current_const_chain_ : BALL::PDBFile
- current_const_protein_ : BALL::PDBFile
- current_const_residue_ : BALL::PDBFile
- current_datablock_ : BALL::CIFFile
- CURRENT_DIRECTORY : BALL::FileSystem
- current_energy_ : BALL::EnergyMinimizer
- current_grad_ : BALL::EnergyMinimizer
- current_image_ : BALL::VIEW::GLOffscreenTarget
- current_indent_ : BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer
- current_item_ : BALL::CIFFile
- current_light_ : BALL::VIEW::LightSettings
- current_line_ : BALL::VIEW::PyWidget
- current_mode_ : BALL::VIEW::InteractionModeManager
- current_model_ : BALL::PDBFile
- current_molecule_ : BALL::GAFFTypeProcessor
- current_parser : BALL::CIFFile::State, BALL::ExpressionParser::State, BALL::GAFFCESParser::State, BALL::GAMESSDatFile::State, BALL::GAMESSLogFile::State, BALL::SmartsParser::State, BALL::SmilesParser::State
- current_parser_ : BALL::ExpressionParser, BALL::SmartsParser, BALL::SmilesParser
- current_PDB_atom_ : BALL::PDBFile
- current_penalty_ : BALL::Kekuliser
- current_position_ : BALL::TContourSurface< T >::Cube
- current_predicate : BALL::GAFFCESParser
- current_protein_ : BALL::PDBFile
- current_record_ : BALL::PDBFile
- current_record_type_ : BALL::PDBFile
- current_reply_ : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- current_residue : BALL::PDB::AdditionalAtomInfo
- current_residue_ : BALL::PDBFile, BALL::VIEW::MolecularControl
- current_root_predicate : BALL::GAFFCESParser
- current_round_ : BALL::GeometricFit
- current_saveframe_ : BALL::CIFFile
- current_script_ : BALL::VIEW::PyWidget
- current_set : BALL::GAMESSLogFile
- current_set_ : BALL::PoseClustering
- current_snapshot_ : BALL::DCDFile, BALL::SnapShotManager
- current_solution_ : BALL::KGreedyBondOrderStrategy
- current_sphere_number_ : BALL::VIEW::XML3DRenderer
- current_state_ : BALL::FPTBondOrderStrategy::DPBackTracking_
- current_temperature_ : BALL::MolecularDynamics
- CURRENT_TIME : BALL::MolecularDynamics::Default, BALL::MolecularDynamics::Option
- current_time_ : BALL::MolecularDynamics
- current_tube_number_ : BALL::VIEW::XML3DRenderer
- custom_color_ : BALL::VIEW::DisplayProperties, BALL::VIEW::LabelDialog
- custom_model_information_ : BALL::VIEW::Representation
- cut_hash_map_ : BALL::TContourSurface< T >
- cut_id_ : BALL::VIEW::MolecularControl
- cut_off2_ : BALL::EFShiftProcessor, BALL::HaighMallionShiftProcessor
- cutlo_ : BALL::EnergyMinimizer
- cutPlaneInstances : BALL::VIEW::RTfactRenderer::RTfactData
- cutPlaneMeshes : BALL::VIEW::RTfactRenderer::RTfactData
- cutPlanes : BALL::VIEW::RTfactRenderer::RTfactData
- cutPlaneShader : BALL::VIEW::RTfactRenderer::RTfactData
- CX_DISTANCE_UPPER : BALL::CHPI::Default, BALL::CHPI::Option, BALL::CHPISlick::Default, BALL::CHPISlick::Option