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Here is a list of all functions with links to the classes they belong to:

### - d -

- dashedBondsEnabled() : BALL::VIEW::AddBallAndStickModel
- Data() : BALL::ResidueTorsions::Data
- data() : BALL::String, BALL::VIEW::Message, BALL::VIEW::PluginDirectoryModel, BALL::VIEW::PluginModel, BALL::VIEW::ShortcutTableModel
- Datacontent() : BALL::CIFFile::Datacontent
- DataIteratorTraits() : BALL::HashGridBox3< Item >::DataIteratorTraits
- Dataset() : BALL::VIEW::Dataset
- DatasetControl() : BALL::VIEW::DatasetControl
- DatasetController() : BALL::VIEW::DatasetController
- DatasetMessage() : BALL::VIEW::DatasetMessage
- DCDFile() : BALL::DCDFile
- deactivate() : BALL::BALLPlugin, BALL::TCPServer, BALL::TCPServerThread, BALL::VIEW::InteractionMode, BALL::VIEW::PickingMode, BALL::VIEW::ServerWidget
- decodeBase64() : BALL::String
- deepCopyOfBacktrackers_() : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- defaultAssign_() : BALL::Enumerator< Container, SiteIterator, Variant >
- defaultsPressed() : BALL::VIEW::LightSettings
- defineFlexibleResiduesGridSet() : BALL::GridBasedScoring
- defineGridSet() : BALL::GridBasedScoring
- defineInputAsTemporary() : BALL::GenericMolFile
- defineReceptorGridSet() : BALL::GridBasedScoring
- deleteChildrenList_() : BALL::Composite
- deleteClicked() : BALL::VIEW::MainControl
- deleteColumn_() : BALL::VIEW::DockResultDialog
- deleteCurrentAtomTriggered_() : BALL::VIEW::EditMode
- deleteCurrentBondTriggered_() : BALL::VIEW::EditMode
- deleteCurrentItems() : BALL::VIEW::DatasetControl, BALL::VIEW::GenericControl, BALL::VIEW::GeometricControl, BALL::VIEW::MolecularControl
- deleteDataset() : BALL::VIEW::DatasetController
- deleteDataset_() : BALL::VIEW::DatasetController, BALL::VIEW::DockResultController, BALL::VIEW::RaytraceableGridController, BALL::VIEW::RegularData3DController, BALL::VIEW::TrajectoryController, BALL::VIEW::VectorGridController
- deleteDatasets() : BALL::VIEW::DatasetController
- deleteDescriptorIDs() : BALL::QSAR::Model
- deleteEdge() : BALL::TSimpleMolecularGraph< Node, Edge >
- deleteEdge_() : BALL::NodeItem< Node, Edge >
- deleteEntry() : BALL::ResourceEntry
- deleteEntryArray() : BALL::ResourceEntry
- deleteIsolatedEdges() : BALL::TriangulatedSurface
- deleteIsolatedPoints() : BALL::TriangulatedSurface
- deleteLine() : BALL::INIFile
- deleteNode() : BALL::TSimpleMolecularGraph< Node, Edge >
- deleteNode_() : BALL::HashSet< Key >
- deleteOverestimatedBonds_() : BALL::BuildBondsProcessor
- deleteProperty() : BALL::VIEW::PropEditorWidget
- deleteProperty_() : BALL::VIEW::PropertyEditor
- deleteRotamer() : BALL::ResidueRotamerSet
- deleteRotamers() : BALL::ResidueRotamerSet
- deleteScoring() : BALL::DockResult
- deleteSection() : BALL::INIFile
- deleteSimilarFaces() : BALL::ReducedSurface
- deleteTexture() : BALL::VIEW::GLRenderWindow
- deleteVariants() : BALL::Enumerator< Container, SiteIterator, Variant >
- Density() : BALL::Density
- depositPFU_() : BALL::SDGenerator
- Descriptor() : BALL::Descriptor
- deselect() : BALL::Composite, BALL::Selectable, BALL::VIEW::MolecularControl, BALL::VIEW::Scene
- deselectCompositeRecursive() : BALL::VIEW::MainControl
- DeselectControlsMessage() : BALL::VIEW::DeselectControlsMessage
- deselectOtherControls_() : BALL::VIEW::GenericControl
- deserializeWardClusterTree() : BALL::PoseClustering
- destroy() : BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Composite, BALL::ConnectedToPredicate::CTPNode, BALL::Directory, BALL::FDPB, BALL::FragmentDB, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::List< Value >, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::PropertyManager, BALL::Protein, BALL::RegularExpression, BALL::Residue, BALL::ResourceEntry, BALL::ResourceFile, BALL::RuleProcessor, BALL::SecondaryStructure, BALL::SmartsMatcher::RecStructPool_, BALL::String, BALL::StringHashMap< Value >, BALL::Substring, BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >, BALL::VIEW::ConnectionObject, BALL::VIEW::ModularWidget
- destroy_() : BALL::EvolutionaryDocking, BALL::GeometricFit
- destroyBond() : BALL::Atom
- destroyBonds() : BALL::Atom, BALL::AtomContainer
- destroyGrids() : BALL::FDPB
- determineMethodOfAtomPairGeneration() : BALL::AmberNonBonded, BALL::CharmmNonBonded, BALL::MMFF94NonBonded
- DeviceEvent() : BALL::VIEW::DeviceEvent
- dfs() : BALL::RingFinder
- dialogButtonClicked_() : BALL::VIEW::AssignBondOrderConfigurationDialog
- dialogButtonsClicked_() : BALL::VIEW::Preferences
- difference() : BALL::Spectrum< DataT, PeakT, PositionT >
- differenceSpectrum() : BALL::Spectrum< DataT, PeakT, PositionT >
- DifferentiableScoringFunction() : BALL::DifferentiableScoringFunction
- DiffGridBasedScoring() : BALL::DiffGridBasedScoring
- Directory() : BALL::Directory
- directorySelectionChanged() : BALL::VIEW::PluginDialog
- disable() : BALL::PeriodicBoundary, BALL::ResidueChecker, BALL::ScoreGridSet, BALL::ScoringComponent
- disableAtoms() : BALL::SDFile
- disableAutomaticResultCreation() : BALL::DockResultFile
- disableLoggingToFile() : BALL::VIEW::MainControl
- disableOutput() : BALL::LogStream
- disableSelection() : BALL::ForceField, BALL::ResidueChecker
- disableStoreInteractions() : BALL::Atom
- disableTransformation() : BALL::File
- disableVelocityStorage() : BALL::DCDFile
- Disc() : BALL::VIEW::Disc
- disconnect() : BALL::DisulfidBondProcessor
- discretizeY() : BALL::QSAR::QSARData
- DisplayListRedeclaration() : BALL::VIEW::GLDisplayList::DisplayListRedeclaration
- displayMatrix() : BALL::QSAR::QSARData
- DisplayProperties() : BALL::VIEW::DisplayProperties
- distance() : BALL::QSAR::Statistics
- distributeDatapoints() : BALL::MPISupport
- DisulfidBondProcessor() : BALL::DisulfidBondProcessor
- Division() : BALL::Division< First, Second, DataType >
- DivisionByZero() : BALL::Exception::DivisionByZero
- DLArrayHelper() : BALL::SimpleDownloaderHelper::DLArrayHelper
- DLHelper() : BALL::SimpleDownloaderHelper::DLHelper
- DLThread() : BALL::SimpleDownloaderHelper::DLThread
- DNAMutator() : BALL::DNAMutator
- DockDialog() : BALL::VIEW::DockDialog
- DockingAlgorithm() : BALL::DockingAlgorithm
- DockingController() : BALL::VIEW::DockingController
- DockingFinishedMessage() : BALL::VIEW::DockingFinishedMessage
- DockingThread() : BALL::VIEW::DockingThread
- dockLigand() : BALL::DockingAlgorithm, BALL::EvolutionaryDocking, BALL::IMGDock
- DockProblem() : BALL::DockProblem
- DockProgressDialog() : BALL::VIEW::DockProgressDialog
- DockResult() : BALL::DockResult
- DockResultController() : BALL::VIEW::DockResultController
- DockResultDialog() : BALL::VIEW::DockResultDialog
- DockResultFile() : BALL::DockResultFile
- DockWidget() : BALL::VIEW::DockWidget
- doFFT() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- doiFFT() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- donorIsHydrogen() : BALL::HBondProcessor::HBond
- doNotAutoActivatePlugin() : BALL::PluginManager
- doNotResize() : BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- doPreTranslation_() : BALL::GeometricFit
- DoubleEditorWidget() : BALL::VIEW::DoubleEditorWidget
- DoubleGene() : BALL::DoubleGene
- DoubleParameter() : BALL::DoubleParameter
- DownloadElectronDensity() : BALL::VIEW::DownloadElectronDensity
- downloadEnded_() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- downloadFinished() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile, BALL::VIEW::PubChemDialog
- DownloadPDBFile() : BALL::VIEW::DownloadPDBFile
- downloadProgress() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- downloadSDFByCID() : BALL::PubChemDownloader
- downloadSDFByName() : BALL::PubChemDownloader
- downloadStarted_() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- downloadToBuffer() : BALL::SimpleDownloader
- downloadToFile() : BALL::SimpleDownloader
- downwardClicked() : BALL::VIEW::DockResultDialog
- DPBackTracking_() : BALL::FPTBondOrderStrategy::DPBackTracking_
- DPBackTrackingCombiner_() : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- DPConfig_() : BALL::FPTBondOrderStrategy::DPConfig_
- DPTable_() : BALL::FPTBondOrderStrategy::DPTable_
- dragEnterEvent() : BALL::VIEW::DockWidget, BALL::VIEW::Scene
- DragLogView() : BALL::VIEW::DragLogView
- draw() : BALL::VIEW::GLDisplayList, BALL::VIEW::MeshBuffer
- drawBuffered() : BALL::VIEW::GLRenderer
- drawDNAAsLadderModel() : BALL::VIEW::AddCartoonModel
- drawFrame_() : BALL::VIEW::SDWidget
- drawLine() : BALL::VIEW::Scene
- drawRiboseAtoms_() : BALL::VIEW::AddCartoonModel
- drawStrand_() : BALL::VIEW::AddCartoonModel
- dropEvent() : BALL::VIEW::DockWidget, BALL::VIEW::Scene
- DSN6File() : BALL::DSN6File
- dummy() : BALL::Visitor< Host >
- dummySlot() : BALL::VIEW::Scene
- dump() : BALL::Atom::BondIteratorTraits, BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::CHPI::AromaticRing, BALL::CHPI::CHGroup, BALL::CHPISlick::AromaticRing, BALL::CHPISlick::CHGroup, BALL::Client, BALL::Composite, BALL::ConnectedToPredicate, BALL::Embeddable, BALL::ExpressionParser::SyntaxTree, BALL::ExpressionTree, BALL::Fragment, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::Kekuliser, BALL::LogStreamBuf, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Object, BALL::Options, BALL::Pair6_12RDFIntegrator, BALL::PairExpRDFIntegrator, BALL::PDBAtom, BALL::PiecewiseFunction, BALL::PiecewisePolynomial, BALL::PropertyManager, BALL::Protein, BALL::RadialDistributionFunction, BALL::RegularExpression, BALL::Residue, BALL::ResourceEntry, BALL::ResourceFile, BALL::RuleEvaluator, BALL::RuleProcessor, BALL::SecondaryStructure, BALL::Selectable, BALL::SmartsMatcher::RecStruct_, BALL::String, BALL::Substring, BALL::TAngle< T >, BALL::TBox3< T >, BALL::TCircle3< T >, BALL::Timer, BALL::TLine3< T >, BALL::TMatrix4x4< T >, BALL::TPlane3< T >, BALL::TQuaternion< T >, BALL::TSimpleBox3< T >, BALL::TSphere3< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::AddBackboneModel, BALL::VIEW::AddBallAndStickModel, BALL::VIEW::AddLineModel, BALL::VIEW::AddSurfaceModel, BALL::VIEW::AddVanDerWaalsModel, BALL::VIEW::AtomBondModelBaseProcessor, BALL::VIEW::Box, BALL::VIEW::Camera, BALL::VIEW::ColorExtension2, BALL::VIEW::ColorHSV, BALL::VIEW::ColorMap, BALL::VIEW::ColorProcessor, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue, BALL::VIEW::CompositeManager, BALL::VIEW::ConnectionObject, BALL::VIEW::Dataset, BALL::VIEW::Disc, BALL::VIEW::GeometricObject, BALL::VIEW::GLDisplayList, BALL::VIEW::GLRenderer, BALL::VIEW::Label, BALL::VIEW::LightSource, BALL::VIEW::Line, BALL::VIEW::MainControl, BALL::VIEW::Mesh, BALL::VIEW::ModelProcessor, BALL::VIEW::ModularWidget, BALL::VIEW::MultiColorExtension, BALL::VIEW::MultiLine, BALL::VIEW::Point, BALL::VIEW::PreferencesEntry, BALL::VIEW::PyWidget, BALL::VIEW::Representation, BALL::VIEW::RepresentationManager, BALL::VIEW::Scene, BALL::VIEW::ServerWidget, BALL::VIEW::SimpleBox, BALL::VIEW::Sphere, BALL::VIEW::Stage, BALL::VIEW::Tube, BALL::VIEW::TwoColoredLine, BALL::VIEW::TwoColoredTube, BALL::VIEW::Vertex2, BALL::VIEW::Vertex
- dumpTree() : BALL::SmartsParser
- dumpTreeRecursive_() : BALL::SmartsParser
- duplicate() : BALL::VIEW::GeometricControl
- duplicateKeyCheckEnabled() : BALL::INIFile
- duplicateProperty() : BALL::VIEW::PropEditorWidget