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BALL::StructureMapper Member List

This is the complete list of members for BALL::StructureMapper, including all inherited members.

A_ | BALL::StructureMapper | protected
argument_pointer typedef | BALL::UnaryFunctor< ArgumentType, ResultType > |
argument_reference typedef | BALL::UnaryFunctor< ArgumentType, ResultType > |
argument_type typedef | BALL::UnaryFunctor< ArgumentType, ResultType > |
B_ | BALL::StructureMapper | protected
bijection_ | BALL::StructureMapper | protected
calculateDefaultBijection(bool limit_to_selection=false) | BALL::StructureMapper |
calculateFragmentBijection(const vector< Fragment * > &A, const vector< Fragment * > &B) | BALL::StructureMapper |
calculateRMSD() | BALL::StructureMapper |
calculateRMSD(const AtomBijection &new_bijection) | BALL::StructureMapper |
calculateTransformation() | BALL::StructureMapper |
const_argument_pointer typedef | BALL::UnaryFunctor< ArgumentType, ResultType > |
const_argument_reference typedef | BALL::UnaryFunctor< ArgumentType, ResultType > |
countFragments_(const AtomContainer &ac) const | BALL::StructureMapper | protected
finish() | BALL::UnaryProcessor< Atom > | inline virtual
getBijection() const | BALL::StructureMapper | inline
getTransformation() const | BALL::TransformationProcessor |
mapFragments(const vector< Fragment * > &A, const vector< Fragment * > &B, Matrix4x4 *transformation, double upper_bound=8.0, double lower_bound=2.5) | BALL::StructureMapper |
mapProteins(Protein &P1, Protein &P2, std::map< String, Size > &type_map, Size &no_matched_ca, double &rmsd, double upper_bound=8.0, double lower_bound=4.0, double tolerance=0.6) | BALL::StructureMapper |
mapResiduesByBackbone(const list< Residue * > &l1, const list< Residue * > &l2) | BALL::StructureMapper |
matchBackboneAtoms(const Residue &r1, const Residue &r2) | BALL::StructureMapper | static
matchPoints(const Vector3 &w1, const Vector3 &w2, const Vector3 &w3, const Vector3 &v1, const Vector3 &v2, const Vector3 &v3) | BALL::StructureMapper | static
operator()(Atom &atom) | BALL::TransformationProcessor | virtual
result_type typedef | BALL::UnaryFunctor< ArgumentType, ResultType > |
rmsd_ | BALL::StructureMapper | protected
searchPattern(vector< Fragment * > &pattern, AtomContainer &composite, double max_rmsd=4.0, double max_center_tolerance=2.0, double upper_bound=8.0, double lower_bound=4.0) | BALL::StructureMapper |
set(AtomContainer &A, AtomContainer &B) | BALL::StructureMapper |
setTransformation(const Matrix4x4 &transformation) | BALL::TransformationProcessor |
start() | BALL::UnaryProcessor< Atom > | inline virtual
StructureMapper() | BALL::StructureMapper |
StructureMapper(AtomContainer &A, AtomContainer &B) | BALL::StructureMapper |
transformation_ | BALL::TransformationProcessor | protected
TransformationProcessor() | BALL::TransformationProcessor |
TransformationProcessor(const Matrix4x4 &transformation) | BALL::TransformationProcessor |
UnaryProcessor() | BALL::UnaryProcessor< Atom > | inline
UnaryProcessor(const UnaryProcessor &) | BALL::UnaryProcessor< Atom > | inline
~StructureMapper() | BALL::StructureMapper | virtual
~UnaryProcessor() | BALL::UnaryProcessor< Atom > | inline virtual