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Here is a list of all class members with links to the classes they belong to:

### - g -

- g : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >::QuickBBState
- g1 : BALL::GRAPH::EditableVertexCopier< Graph1, Graph2 >
- g2 : BALL::GRAPH::EditableVertexCopier< Graph1, Graph2 >
- Ga : BALL::Element
- ga_ : BALL::EvolutionaryDocking
- GADOLINIUM : BALL::Element
- GAFF_ATOMTYPE_POSTPROCESSING : BALL::GAFFTypeProcessor::Default, BALL::GAFFTypeProcessor::Option
- GAFFCESatomMatcher() : BALL::GAFFCESParser
- GAFFCESParser() : BALL::GAFFCESParser
- GAFFTypeProcessor() : BALL::GAFFTypeProcessor
- GALAXY_OPT_OUTDIR : BALL::ParamFile
- GALAXY_OPT_OUTID : BALL::ParamFile
- GALLIUM : BALL::Element
- GAMESSDatFile() : BALL::GAMESSDatFile
- GAMESSLogFile() : BALL::GAMESSLogFile
- gamma : BALL::PDB::RecordCRYST1::UnitCell, BALL::PDB::Structure::UnitCellInfo
- gamma_ : BALL::CCP4File, BALL::CrystalInfo, BALL::DSN6File
- GAS_CONSTANT : BALL::Constant
- GB_SCALING_FILE : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- Gd : BALL::Element
- Ge : BALL::Element
- GeneralException() : BALL::Exception::GeneralException
- GeneralizedBornModel() : BALL::GeneralizedBornModel
- GeneralLowerBoundAlgorithm() : BALL::TreeWidthImplementation< UndirectedGraph >::GeneralLowerBoundAlgorithm< Criterion, Reducer >
- generate() : BALL::VIEW::GenerateCrystalDialog
- generate_() : BALL::VIEW::GenerateCrystalDialog
- generateAllAngles() : BALL::GeometricFit::RotationAngles_
- generateAsymmetricUnit() : BALL::CrystalGenerator
- generateAtomScoreContributions_() : BALL::Rescoring3D, BALL::Rescoring4D
- generateButtonClicked() : BALL::VIEW::PubChemDialog
- generateCrystal() : BALL::VIEW::MolecularStructure
- GenerateCrystalDialog() : BALL::VIEW::GenerateCrystalDialog
- GenerateCrystalThread : BALL::VIEW::GenerateCrystalDialog, BALL::VIEW::GenerateCrystalThread
- generateExternalSet() : BALL::QSAR::QSARData
- generateFingerprint() : BALL::MolecularSimilarity
- generateFingerprints() : BALL::MolecularSimilarity
- generateFromSMILES() : BALL::VIEW::PubChemDialog
- generateHash() : BALL::Conformation
- generateIlluminationTexture_() : BALL::VIEW::GLRenderer
- generateListViewItem_() : BALL::VIEW::GeometricControl, BALL::VIEW::MolecularControl
- generateModel() : BALL::QSAR::AutomaticModelCreator
- generateMoleculesVector() : BALL::PeriodicBoundary
- generateNextMolecule() : BALL::RGroupAssembler
- generatePacking() : BALL::CrystalGenerator
- generatePathFingerprint() : BALL::MolecularSimilarity
- generatePathFingerprint_() : BALL::MolecularSimilarity
- generatePathHash_() : BALL::MolecularSimilarity
- generateRegularData3DGrids() : BALL::Rescoring3D
- generateScoreContributions_() : BALL::Rescoring1D, BALL::Rescoring3D, BALL::Rescoring
- generateSD() : BALL::SDGenerator
- generateSomeAngles() : BALL::GeometricFit::RotationAngles_
- generateSymMoleculesWithinDistance() : BALL::CrystalGenerator
- generateTopologyHash() : BALL::FlexibleMolecule
- generateUnitCell() : BALL::CrystalGenerator
- generator_ : BALL::VIEW::GenerateCrystalDialog
- GenericControl() : BALL::VIEW::GenericControl
- GenericGene() : BALL::GenericGene
- GenericMolFile() : BALL::GenericMolFile
- GenericParameter() : BALL::GenericParameter
- GenericSelectionMessage() : BALL::VIEW::GenericSelectionMessage
- GeneticAlgorithm() : BALL::GeneticAlgorithm
- GeneticIndividual() : BALL::GeneticIndividual
- GEOMETRIC_FIT : BALL::VIEW::DockingController
- GEOMETRIC_MEAN : BALL::ShiftedLVMMMinimizer
- geometric_objects_ : BALL::VIEW::ModelProcessor, BALL::VIEW::Representation
- GeometricControl() : BALL::VIEW::GeometricControl
- GeometricFit() : BALL::GeometricFit
- GeometricFitDialog() : BALL::VIEW::GeometricFitDialog
- GeometricObject() : BALL::VIEW::GeometricObject
- GeometricObjectHashMap : BALL::VIEW::GLRenderer
- GeometricObjectSelectionMessage() : BALL::VIEW::GeometricObjectSelectionMessage
- GERMANIUM : BALL::Element
- get() : BALL::Atom, BALL::AtomContainer, BALL::BitVector, BALL::Chain, BALL::CommandlineParser, BALL::Composite, BALL::Directory, BALL::HashGrid3< Item >, BALL::HashSet< Key >, BALL::List< Value >, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Options, BALL::PDBAtom, BALL::PersistenceManager, BALL::PropertyManager, BALL::Protein, BALL::Quadruple< T1, T2, T3, T4 >, BALL::RegularExpression, BALL::Residue, BALL::ResourceEntry, BALL::Result, BALL::SecondaryStructure, BALL::Selectable, BALL::String, BALL::StringHashMap< Value >, BALL::System, BALL::TAngle< T >, BALL::TCircle3< T >, BALL::TextPersistenceManager, BALL::TLine3< T >, BALL::TMatrix4x4< T >, BALL::TPlane3< T >, BALL::TQuaternion< T >, BALL::Triple< T1, T2, T3 >, BALL::TSimpleBox3< T >, BALL::TSphere3< T >, BALL::TSurface< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue, BALL::VIEW::Hotkey, BALL::XDRPersistenceManager
- get3Prime() : BALL::NucleicAcid
- get5Prime() : BALL::NucleicAcid
- get_allocator() : BALL::String
- getAbsIntegral() : BALL::Spectrum< DataT, PeakT, PositionT >
- getAcceptor() : BALL::HBondProcessor::HBond
- getAccuracyCV() : BALL::QSAR::ClassificationValidation
- getAccuracyInputTest() : BALL::QSAR::ClassificationValidation
- getAcidicColor() : BALL::VIEW::ResidueTypeColorProcessor
- getActiveSitePoints() : BALL::BindingPocketProcessor
- getActivity() : BALL::QSAR::QSARData
- getAdditionalGridDistance() : BALL::VIEW::ColorProcessor
- getAdvancedColoringOptions_() : BALL::VIEW::DisplayProperties
- getAdvancedModelOptions_() : BALL::VIEW::DisplayProperties
- getAlgorithmOptions() : BALL::VIEW::DockDialog
- getAllComponents() : BALL::ConnectedComponentsProcessor
- getAllItems_() : BALL::VIEW::MolecularControl
- getAllSmallRings() : BALL::RingPerceptionProcessor
- getAlpha() : BALL::LineSearch, BALL::VIEW::ColorRGBA
- getAlphaBlending() : BALL::VIEW::ColorMap
- getAlternateLocationIndicator() : BALL::PDBAtom
- getAmberConfigurationDialog() : BALL::VIEW::MolecularStructure
- getAmberFF() : BALL::VIEW::MolecularStructure
- getAmberNonBonded() : BALL::Electrostatic, BALL::VanDerWaals
- getAminoAcid_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- getAncestor() : BALL::Composite
- getAncestor_() : BALL::VIEW::ChainColorProcessor, BALL::VIEW::MoleculeColorProcessor, BALL::VIEW::PositionColorProcessor
- getAngle() : BALL::ReducedSurface, BALL::RSEdge, BALL::SASEdge, BALL::TQuaternion< T >, BALL::TVector3< T >, BALL::VIEW::LightSource
- getAnimationPoints() : BALL::VIEW::Scene
- getAnimationSmoothness() : BALL::VIEW::Scene
- getArea() : BALL::TSurface< T >
- getArgument() : BALL::ExpressionPredicate
- getAromaticColor() : BALL::VIEW::ResidueTypeColorProcessor
- getAromaticRings() : BALL::MMFF94
- getArrowWidth() : BALL::VIEW::AddCartoonModel
- getAtom() : BALL::AtomContainer, BALL::NodeItem< Node, Edge >, BALL::Peak< PositionType >, BALL::RSVertex, BALL::SESVertex
- getAtomAreas() : BALL::NumericalSAS
- getAtomAveraging() : BALL::CreateSpectrumProcessor
- getAtomBijection() : BALL::PoseClustering
- getAtomBranchDesignator() : BALL::PDBFile
- getAtomByName_() : BALL::Peptides::PeptideBuilder
- getAtomContainer() : BALL::AssignBondOrderProcessor, BALL::AtomContainer
- getAtomDescriptor() : BALL::SolventDescriptor
- getAtomElementSymbol() : BALL::PDBFile
- getAtomForces() : BALL::SnapShot
- getAtomFragmentMap() : BALL::ScoringFunction
- getAtomGrid() : BALL::VIEW::ColorProcessor
- getAtomicNumber() : BALL::Element
- getAtomicRadius() : BALL::Element
- getAtomicWeight() : BALL::Element
- getAtomIgnoring() : BALL::CreateSpectrumProcessor
- getAtomList_() : BALL::VIEW::AtomBondModelBaseProcessor
- getAtomName() : BALL::PDBFile
- getAtomPairs() : BALL::MMFF94NonBonded
- getAtomPositions() : BALL::Conformation, BALL::SnapShot
- getAtomRemotenessIndicator() : BALL::PDBFile
- getAtoms() : BALL::ForceField
- getAtomsDistance() : BALL::VIEW::FieldLinesDialog
- getAtomSet_() : BALL::VIEW::AtomBondModelBaseProcessor
- getAtomType() : BALL::PLP
- getAtomTypePenalty() : BALL::PartialBondOrderAssignment
- getAtomTypes() : BALL::ForceFieldParameters, BALL::GridBasedScoring, BALL::GridedMM, BALL::GridedPLP, BALL::MMFF94, BALL::MMFF94AtomTypes, BALL::PLPScoring
- getAtomTypesMap() : BALL::GridBasedScoring
- getAtomVelocities() : BALL::SnapShot
- getAtomVolumes() : BALL::NumericalSAS
- getAttenuation() : BALL::VIEW::LightSource
- getAttenuation_() : BALL::VIEW::LightSettings
- getAutoActivatePlugins() : BALL::PluginManager
- getAvailableNamingStandards() : BALL::FragmentDB
- getAxis() : BALL::TQuaternion< T >
- getBackboneHBondPattern() : BALL::HBondProcessor
- getBackgroundColor() : BALL::VIEW::Stage
- getBackupCFS_() : BALL::SDGenerator
- getBallAndStickStickRadius() : BALL::VIEW::ModelSettingsDialog
- getBALLAtom() : BALL::NMRStarFile::BALLToBMRBMapper
- getBallRadius() : BALL::VIEW::AddBallAndStickModel, BALL::VIEW::ModelSettingsDialog
- getBALLToBMRBMapping() : BALL::NMRStarFile::BALLToBMRBMapper
- getBaseDirectory() : BALL::VIEW::HelpViewer
- getBaseFunction() : BALL::ScoringFunction
- getBaseSize() : BALL::VIEW::ForceModel
- getBasicColor() : BALL::VIEW::ResidueTypeColorProcessor
- getBasisOption() : BALL::GAMESSLogFile
- getBasisSet() : BALL::GAMESSLogFile
- getBathRelaxationTime() : BALL::CanonicalMD
- getBendEnergy() : BALL::AmberFF, BALL::CharmmFF, BALL::MMFF94, BALL::MMFF94StretchBend
- getBends() : BALL::MMFF94StretchBend
- getBendType() : BALL::MMFF94StretchBend
- getBestPoses() : BALL::GridAnalysis
- getBeta() : BALL::LineSearch
- getBijection() : BALL::StructureMapper
- getBit() : BALL::BitVector
- getBitSet() : BALL::BitVector
- getBitVector() : BALL::PropertyManager
- getBlockedData() : BALL::GAMESSDatFile
- getBlue() : BALL::VIEW::ColorRGBA
- getBMRBToBALLMapping() : BALL::NMRStarFile::BALLToBMRBMapper
- getBond() : BALL::Atom, BALL::EdgeItem< Node, Edge >
- getBondLength_() : BALL::AddHydrogenProcessor
- getBondMap() : BALL::BuildBondsProcessor
- getBondOrder() : BALL::SmartsParser::SPBond
- getBondOrderDialog() : BALL::VIEW::MolecularStructure
- getBondOrderResultsDialog() : BALL::VIEW::MolecularStructure
- getBondOrders() : BALL::FPTBondOrderStrategy::Assignment_
- getBondOrderString_() : BALL::VIEW::Scene
- getBondParameters() : BALL::MMFF94StretchParameters
- getBonds() : BALL::MMFF94
- getBondsInBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- getBondType() : BALL::ConnectedToPredicate::CTPNode
- getBondTypeChar() : BALL::ConnectedToPredicate::CTPNode
- getBool() : BALL::NamedProperty, BALL::Options
- getBorder() : BALL::TriangulatedSurface
- getBound_() : BALL::INIFile::IteratorTraits_
- getBoundAtom() : BALL::Bond
- getBoundingBox() : BALL::ReducedSurface
- getBoundingBoxX() : BALL::TRRFile
- getBoundingBoxY() : BALL::TRRFile
- getBoundingBoxZ() : BALL::TRRFile
- getBoundString() : BALL::Substring
- getBox() : BALL::BoundingBoxProcessor, BALL::HashGrid3< Item >, BALL::PeriodicBoundary
- getBranchDesignator() : BALL::PDBAtom
- getBucketSize() : BALL::HashSet< Key >
- getBuffer() : BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- getBurialDepthScale() : BALL::ScoringFunction
- getCamera() : BALL::VIEW::Stage
- getCapacity() : BALL::HashSet< Key >
- getCappingColor() : BALL::VIEW::ClippingPlane
- getCarbonTypes_() : BALL::GAFFTypeProcessor
- getCart2Frac() : BALL::CrystalInfo
- getCartoonArrowWidth() : BALL::VIEW::ModelSettingsDialog
- getCartoonHelixRadius() : BALL::VIEW::ModelSettingsDialog
- getCartoonStrandHeight() : BALL::VIEW::ModelSettingsDialog
- getCartoonStrandWidth() : BALL::VIEW::ModelSettingsDialog
- getCartoonTubeRadius() : BALL::VIEW::ModelSettingsDialog
- getCategory() : BALL::CIFFile::SaveFrame
- getCAtom() : BALL::CHPI::CHGroup, BALL::CHPISlick::CHGroup
- getCellAngleAlpha() : BALL::CrystalInfo
- getCellAngleBeta() : BALL::CrystalInfo
- getCellAngleGamma() : BALL::CrystalInfo
- getCellEdgeLengthA() : BALL::CrystalInfo
- getCellEdgeLengthB() : BALL::CrystalInfo
- getCellEdgeLengthC() : BALL::CrystalInfo
- getCenter() : BALL::GeometricCenterProcessor, BALL::RSFace, BALL::ScoreGridSet
- getCenterOfTorus() : BALL::RSEdge
- getCentersOfMass() : BALL::PoseClustering
- getCentralMomentsDifference() : BALL::Spectrum< DataT, PeakT, PositionT >
- getCentre() : BALL::CHPI::AromaticRing, BALL::CHPISlick::AromaticRing
- getCFS_() : BALL::SDGenerator
- getChain() : BALL::Atom, BALL::NMRStarFile::BALLToBMRBMapper, BALL::PDBAtom, BALL::Protein, BALL::Residue, BALL::SecondaryStructure
- getChainName() : BALL::Peptides::PeptideBuilder
- getChannel() : BALL::VIEW::PixelFormat
- getCharge() : BALL::Atom, BALL::Templates
- getCharges() : BALL::HMOFile
- getCharmmConfigurationDialog() : BALL::VIEW::MolecularStructure
- getCharmmFF() : BALL::VIEW::MolecularStructure
- getChemicalUnit() : BALL::NMRStarFile::MolecularSystem
- getChemicalUnitByLabel() : BALL::NMRStarFile
- getChi2Angle_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- getChiAngle_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- getChild() : BALL::Composite, BALL::ResourceEntry
- getChildren() : BALL::ConnectedToPredicate::CTPNode, BALL::ExpressionTree
- getChirality() : BALL::SmilesParser::SPAtom
- getCHPIScore() : BALL::SLICKEnergy, BALL::SLICKScore
- getCircle() : BALL::SASEdge, BALL::SESEdge, BALL::VIEW::Disc
- getClassAndMember_() : BALL::VIEW::PyWidget
- getClassificationStatisticName() : BALL::QSAR::Registry
- getClassificationStatistics() : BALL::QSAR::Registry
- getClassLabels() : BALL::QSAR::ClassificationModel
- getClassResults() : BALL::QSAR::ClassificationValidation
- getClickedItems() : BALL::VIEW::Scene
- getClippingPlane() : BALL::VIEW::ClippingDialog
- getClippingPlanes() : BALL::VIEW::RepresentationManager
- getClockTime() : BALL::Timer
- getClosestIndex() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getClosestItem() : BALL::HashGrid3< Item >, BALL::VIEW::ColorProcessor
- getClosestValue() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getCluster() : BALL::PoseClustering
- getClusterConformationSet() : BALL::PoseClustering
- getClusterRepresentative() : BALL::PoseClustering
- getClusterRMSD_() : BALL::PoseClustering
- getClusterScore() : BALL::PoseClustering
- getClusterSize() : BALL::PoseClustering
- getCoefficient() : BALL::ScoringComponent, BALL::ScoringFunction
- getCoefficients() : BALL::PiecewiseFunction
- getCoefficientStdErrors() : BALL::QSAR::RegressionValidation
- getCoilColor() : BALL::VIEW::SecondaryStructureColorProcessor
- getColor() : BALL::VIEW::AtomChargeColorProcessor, BALL::VIEW::AtomDistanceColorProcessor, BALL::VIEW::ColorButton, BALL::VIEW::ColorProcessor, BALL::VIEW::ContourSurfaceDialog, BALL::VIEW::ElementColorProcessor, BALL::VIEW::ForceColorProcessor, BALL::VIEW::GeometricObject, BALL::VIEW::LabelModel, BALL::VIEW::LightSource, BALL::VIEW::OccupancyColorProcessor, BALL::VIEW::PositionColorProcessor, BALL::VIEW::ResidueNameColorProcessor, BALL::VIEW::ResidueNumberColorProcessor, BALL::VIEW::ResidueTypeColorProcessor, BALL::VIEW::SecondaryStructureColorProcessor, BALL::VIEW::TemperatureFactorColorProcessor
- getColor2() : BALL::VIEW::ColorExtension2
- getColor_() : BALL::VIEW::POVRenderer, BALL::VIEW::XML3DRenderer
- getColorIndex_() : BALL::VIEW::POVRenderer, BALL::VIEW::XML3DRenderer
- getColoringMethod() : BALL::VIEW::CreateRepresentationMessage, BALL::VIEW::Representation
- getColoringName() : BALL::VIEW::ModelInformation
- getColorMap() : BALL::VIEW::ElementColorProcessor, BALL::VIEW::ResidueNameColorProcessor
- getColorProcessor() : BALL::VIEW::Representation
- getColors() : BALL::VIEW::ColoringSettingsDialog, BALL::VIEW::ColorTable, BALL::VIEW::GeometricObject, BALL::VIEW::InterpolateColorProcessor, BALL::VIEW::MultiColorExtension, BALL::VIEW::PositionColorProcessor
- getColumn() : BALL::TMatrix4x4< T >
- getColumnIndex() : BALL::ParameterSection
- getComment() : BALL::XYZFile
- getComments() : BALL::HMOFile
- getCompareMode() : BALL::String
- getCompletionBox_() : BALL::VIEW::PyWidget
- getComponent() : BALL::ForceField, BALL::ScoringFunction
- getComponentNumber() : BALL::SmartsParser::SPNode
- getComponents() : BALL::ConnectedComponentsProcessor, BALL::TreeWidth< UndirectedGraph >
- getComposite() : BALL::FragmentDistanceCollector, BALL::VIEW::BALLThread, BALL::VIEW::CompositeMessage, BALL::VIEW::Dataset, BALL::VIEW::GeometricObject
- getCompositeManager() : BALL::VIEW::MainControl
- getCompositeName() : BALL::VIEW::CompositeMessage, BALL::VIEW::Representation
- getComposites() : BALL::VIEW::ColorProcessor, BALL::VIEW::CompositeManager, BALL::VIEW::CreateRepresentationMessage, BALL::VIEW::Representation
- getConfigDialog() : BALL::VIEW::VIEWPlugin
- getConformation() : BALL::FlexibleMolecule, BALL::Result::ResultData
- getConformationById() : BALL::FlexibleMolecule
- getConformationId() : BALL::FlexibleMolecule
- getConformations() : BALL::FlexibleMolecule
- getConformationSet() : BALL::DockingAlgorithm, BALL::DockResult, BALL::GeometricFit, BALL::PoseClustering, BALL::VIEW::DockingFinishedMessage
- getConformer() : BALL::FlexibleMolecule
- getConformerById() : BALL::FlexibleMolecule
- getConfusionMatrix() : BALL::QSAR::ClassificationValidation
- getConjugate() : BALL::TQuaternion< T >
- getConnectivity() : BALL::AddHydrogenProcessor
- getConstant() : BALL::MutableConstant< DataType >
- getConstants() : BALL::Pair6_12RDFIntegrator, BALL::PairExpRDFIntegrator
- getContactCircle() : BALL::RSEdge
- getContainedAtoms() : BALL::ReferenceArea
- getContainer() : BALL::Atom::BondIteratorTraits, BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashSet< Key >::IteratorTraits, BALL::ResourceEntry::IteratorTraits_
- getContainers() : BALL::VIEW::Scene
- getContent() : BALL::INIFile, BALL::VIEW::HotkeyTable, BALL::VIEW::PythonSettings
- getContextComposite() : BALL::VIEW::MolecularControl
- getContextMenu() : BALL::VIEW::MolecularControl
- getController() : BALL::VIEW::DatasetControl
- getControlScreenNumber() : BALL::VIEW::StageSettings
- getControlScreenRendererType() : BALL::VIEW::StageSettings
- getCoordinates() : BALL::TContourSurface< T >::Cube, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getCorrectionParameter() : BALL::ShiftedLVMMMinimizer
- getCovalentRadius() : BALL::Element
- getCovariance() : BALL::QSAR::Statistics
- getCPUTime() : BALL::Timer
- getCreationMethods() : BALL::Expression
- getCTerminal() : BALL::Chain, BALL::Protein, BALL::SecondaryStructure
- getCurentModel() : BALL::PDBInfo
- getCurrent() : BALL::Enumerator< Container, SiteIterator, Variant >
- getCurrentAtom() : BALL::VIEW::Scene
- getCurrentBond() : BALL::VIEW::Scene
- getCurrentLigand() : BALL::DockResultFile
- getCurrentLightNumber_() : BALL::VIEW::LightSettings
- getCurrentLine() : BALL::VIEW::PyWidget
- getCurrentModel() : BALL::PDBFile, BALL::PDBInfo
- getCurrentModeName() : BALL::VIEW::InteractionModeManager
- getCurrentScript() : BALL::VIEW::PyWidget
- getCurrentSnapshotNumber() : BALL::SnapShotManager
- getCurrentWord_() : BALL::VIEW::PyWidget
- getCurvature() : BALL::CubicSpline1D
- getCVRes() : BALL::QSAR::ClassificationValidation, BALL::QSAR::RegressionValidation, BALL::QSAR::Validation
- getData() : BALL::Atom::BondIteratorTraits, BALL::BinaryFileAdaptor< T >, BALL::Bruker1DFile, BALL::Bruker2DFile, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::EdgeItem< Node, Edge >, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashSet< Key >::IteratorTraits, BALL::NodeItem< Node, Edge >, BALL::ResourceEntry::IteratorTraits_, BALL::Result, BALL::Spectrum< DataT, PeakT, PositionT >, BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::DockResultController, BALL::VIEW::FrameBuffer, BALL::VIEW::RaytraceableGridController, BALL::VIEW::RegularData3DController, BALL::VIEW::TrajectoryController, BALL::VIEW::VectorGridController
- getDatablock() : BALL::CIFFile
- getDataItem() : BALL::CIFFile::Datablock, BALL::CIFFile::SaveFrame
- getDataItemValue() : BALL::CIFFile::SaveFrame
- getDataPath() : BALL::Path
- getDataset() : BALL::VIEW::DatasetController, BALL::VIEW::DatasetMessage
- getDatasetControl() : BALL::VIEW::DatasetController
- getDatasets() : BALL::VIEW::DatasetControl, BALL::VIEW::DatasetController
- getDCDFile() : BALL::VIEW::MolecularDynamicsDialog
- getDefault() : BALL::Factory< T >
- getDefaultColor() : BALL::VIEW::ColorButton, BALL::VIEW::ColorProcessor
- getDefaultCommunicator() : BALL::MPISupport
- getDefaultDataPath() : BALL::Path
- getDefaultNamingStandard() : BALL::FragmentDB
- getDefaultOptions() : BALL::EvolutionaryDocking, BALL::IMGDock, BALL::ScoringFunction
- getDefaultPage() : BALL::VIEW::HelpViewer
- getDefaultPeak() : BALL::Experiment< PeakListType >
- getDefaultValence() : BALL::SmartsParser::SPAtom, BALL::SmilesParser::SPAtom
- getDefaultValue() : BALL::CubicSpline1D
- getDegree() : BALL::Composite, BALL::NodeItem< Node, Edge >, BALL::PiecewisePolynomial
- getDensity() : BALL::SurfaceProcessor, BALL::TriangulatedSAS, BALL::TriangulatedSES, BALL::TriangulatedSurface
- getDependentRenderers() : BALL::VIEW::RenderSetup
- getDepth() : BALL::Composite, BALL::ResourceEntry, BALL::ResourceEntry::IteratorTraits_, BALL::TBox3< T >, BALL::TSimpleBox3< T >, BALL::UCK
- getDepthVector() : BALL::TBox3< T >
- getDescription() : BALL::BALLPlugin, BALL::Result, BALL::VIEW::VIEWPlugin
- getDescriptorIDs() : BALL::QSAR::Model
- getDescriptorMatrix() : BALL::QSAR::Model
- getDescriptorNames() : BALL::QSAR::Model
- getDescriptorTransformations() : BALL::QSAR::Model
- getDeterminant() : BALL::TMatrix4x4< T >
- getDevice() : BALL::VIEW::DeviceEvent
- getDiagonal() : BALL::TMatrix4x4< T >
- getDiagonalVector() : BALL::TBox3< T >
- getDihedral() : BALL::RotateBond
- getDimension() : BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getDirection() : BALL::EnergyMinimizer, BALL::VIEW::LightSource
- getDirection_() : BALL::VIEW::LightSettings
- getDisplayMode() : BALL::DockingAlgorithm
- getDistance() : BALL::Atom::BondIteratorTraits, BALL::Atom, BALL::FragmentDistanceCollector, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::AtomDistanceColorProcessor, BALL::VIEW::Camera, BALL::VIEW::ClippingPlane
- getDisulfidBonds() : BALL::DisulfidBondProcessor
- getDNABaseRadius() : BALL::VIEW::AddCartoonModel, BALL::VIEW::ModelSettingsDialog
- getDNAHelixRadius() : BALL::VIEW::AddCartoonModel, BALL::VIEW::ModelSettingsDialog
- getDNALadderRadius() : BALL::VIEW::AddCartoonModel, BALL::VIEW::ModelSettingsDialog
- getDockDialog() : BALL::VIEW::DockingController
- getDockingAlgorithm() : BALL::DockResult, BALL::VIEW::DockProgressDialog
- getDockingOptions() : BALL::DockResult
- getDonor() : BALL::HBondProcessor::HBond
- getDotSize() : BALL::VIEW::GridVisualisation
- getDouble() : BALL::NamedProperty
- getDoubleValue() : BALL::JCAMPFile
- getDownsamplingFactor() : BALL::VIEW::GLRenderWindow, BALL::VIEW::Scene
- getDrawingMode() : BALL::VIEW::GLRenderer, BALL::VIEW::Representation
- getDrawingPrecision() : BALL::VIEW::ModelProcessor, BALL::VIEW::Representation
- getEdge() : BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::MolecularGraph, BALL::ReducedSurface, BALL::SolventAccessibleSurface, BALL::TSimpleMolecularGraph< Node, Edge >
- getEdgeProperties() : BALL::GRAPH::UndoEliminateOperation< UndirectedGraph >
- getEdges() : BALL::GRAPH::UndoEliminateOperation< UndirectedGraph >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::SmartsParser
- getEditElementType() : BALL::VIEW::Scene
- getEditorFont() : BALL::VIEW::PythonSettings
- getElectronegativity() : BALL::Element
- getElectrostaticEnergy() : BALL::AmberNonBonded, BALL::CharmmNonBonded
- getElement() : BALL::Atom, BALL::PTE_
- getElementName() : BALL::GAFFCESParser::CESelementConnectionPredicate, BALL::GAFFCESParser::CESelementPredicate
- getElementSymbols() : BALL::GAFFCESParser
- getEliminatedVertex() : BALL::GRAPH::UndoEliminateOperation< UndirectedGraph >
- getEmpiricalParameters() : BALL::MMFF94StretchParameters
- getEnclosingIndices() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getEnclosingValues() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getEndpoint_() : BALL::VIEW::SDWidget
- getEndSnapshot() : BALL::VIEW::SnapshotVisualisationDialog
- getEnergy() : BALL::EnergyMinimizer, BALL::EnergyProcessor, BALL::FDPB, BALL::ForceField, BALL::ForceFieldComponent, BALL::IMGDock, BALL::Result::ResultData
- getEnergyDifference() : BALL::VIEW::MinimizationDialog
- getEnergyDifferenceBound() : BALL::EnergyMinimizer
- getEnergyOutputFrequency() : BALL::EnergyMinimizer, BALL::MolecularDynamics
- getEnergyToAbort() : BALL::EnergyMinimizer, BALL::MolecularDynamics
- getEnergyUpdateCounter() : BALL::EnergyMinimizer
- getEntries() : BALL::JCAMPFile
- getEntry() : BALL::QSAR::Registry, BALL::ResourceEntry, BALL::ResourceFile, BALL::VIEW::ShowHelpMessage
- getEntry_() : BALL::VIEW::ShortcutRegistry
- getEntryFor() : BALL::VIEW::ColoringSettingsDialog, BALL::VIEW::ModelSettingsDialog
- getEntryInformation() : BALL::NMRStarFile
- getEquation() : BALL::ScoringFunction
- getEquivalence() : BALL::MMFF94AtomTypeEquivalences
- getEquivalences() : BALL::MMFF94
- getErrorCode() : BALL::FDPB
- getErrorMessage() : BALL::FDPB, BALL::PyCAPIKernel, BALL::PyInterpreter, BALL::PyKernel
- getES() : BALL::GridedMM, BALL::GridedPLP, BALL::MMScoring, BALL::PBScoring, BALL::PLPScoring, BALL::ScoringFunction
- getESEnergy() : BALL::AmberFF, BALL::CharmmFF, BALL::MMFF94, BALL::MMFF94NonBonded, BALL::PLP
- getExpandedText() : BALL::VIEW::Label
- getExpEnergyStddev() : BALL::ScoringFunction
- getExponent() : BALL::MutablePower< Function, DataType >
- getExpression() : BALL::CreateSpectrumProcessor, BALL::NumberOfHydrogenBondAcceptors, BALL::NumberOfHydrogenBondDonors, BALL::NumberOfHydrophobicAtoms, BALL::Selector, BALL::SimpleExperiment1D
- getExpressionString() : BALL::Expression
- getExpressionTree() : BALL::Expression
- getExtensions() : BALL::VIEW::GLRenderer
- getEyeDistance() : BALL::VIEW::Stage
- getFace() : BALL::GraphEdge< Vertex, Edge, Face >, BALL::ReducedSurface, BALL::SolventAccessibleSurface
- getFcv() : BALL::QSAR::RegressionValidation
- getFDPBDialog() : BALL::VIEW::MolecularStructure
- getFDPBSolver() : BALL::VIEW::FDPBDialog
- getFeatureSelectionName() : BALL::QSAR::Registry
- getField() : BALL::LineBasedFile, BALL::String
- getFieldQuoted() : BALL::String
- getFile() : BALL::Exception::GeneralException
- getFileName() : BALL::VIEW::FileObserver
- getFilename() : BALL::AssignRadiusProcessor, BALL::Exception::FileNotFound, BALL::File::CannotWrite, BALL::FragmentDB, BALL::INIFile, BALL::Parameters, BALL::PDBInfo, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::ShiftModel, BALL::VIEW::CharmmConfigurationDialog, BALL::VIEW::ExportGeometryDialog, BALL::VIEW::PythonSettings
- getFileStream() : BALL::File
- getFileTypes_() : BALL::VIEW::DatasetController
- getFinalizeOnDestruct() : BALL::MPISupport
- getFirst() : BALL::Addition< First, Second, DataType >, BALL::Division< First, Second, DataType >, BALL::Product< First, Second, DataType >, BALL::Subtraction< First, Second, DataType >
- getFirstAtom() : BALL::Bond
- getFirstChild() : BALL::Composite
- getFirstColor() : BALL::VIEW::ResidueNumberColorProcessor
- getFirstEdge() : BALL::SmartsParser::SPNode
- getFirstEntry() : BALL::Directory
- getFirstIndex() : BALL::Substring
- getFirstMolecule() : BALL::ScoringFunction
- getFirstOutputConformation() : BALL::Result
- getFirstSPEdge() : BALL::SmartsParser::SPEdge
- getFirstSPNode() : BALL::SmartsParser::SPEdge
- getFirstStrand() : BALL::NucleotideMapping
- getFitnessValue() : BALL::GeneticIndividual
- getFitRes() : BALL::QSAR::ClassificationValidation, BALL::QSAR::RegressionValidation, BALL::QSAR::Validation
- getFlags() : BALL::VIEW::PixelFormat
- getFlexDefinition() : BALL::Receptor
- getFlexDefinitions() : BALL::Receptor
- getFloat() : BALL::NamedProperty
- getFloatValue_() : BALL::VIEW::ModelSettingsDialog
- getFlushToDiskFrequency() : BALL::SnapShotManager
- getFocalDistance() : BALL::VIEW::Stage
- getFogIntensity() : BALL::VIEW::Stage
- getFont() : BALL::VIEW::Label, BALL::VIEW::LabelModel, BALL::VIEW::MainControlPreferences
- getForce() : BALL::Atom
- getForceBase() : BALL::VIEW::ModelSettingsDialog
- getForceField() : BALL::AmberEvaluation, BALL::EnergyMinimizer, BALL::ForceFieldComponent, BALL::ForceFieldEvaluation, BALL::MolecularDynamics, BALL::SnapShotManager, BALL::VIEW::MolecularStructure
- getForceFieldID() : BALL::VIEW::MolecularStructure
- getForceMaxLength() : BALL::VIEW::ModelSettingsDialog
- getForceOffset() : BALL::VIEW::ModelSettingsDialog
- getForceScaling() : BALL::VIEW::ModelSettingsDialog
- getForceUpdateCounter() : BALL::EnergyMinimizer
- getFormalCharge() : BALL::Atom, BALL::SmilesParser::SPAtom
- getFormat() : BALL::VIEW::FrameBuffer, BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- getFormula() : BALL::UCK
- getFourierDifference() : BALL::Spectrum< DataT, PeakT, PositionT >
- getFourierSpaceMax() : BALL::TFFT1D< ComplexTraits >
- getFourierSpaceMaxX() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMaxY() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMaxZ() : BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMin() : BALL::TFFT1D< ComplexTraits >
- getFourierSpaceMinX() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMinY() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMinZ() : BALL::TFFT3D< ComplexTraits >
- getFourierStepWidth() : BALL::TFFT1D< ComplexTraits >
- getFourierStepWidthX() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getFourierStepWidthY() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getFourierStepWidthZ() : BALL::TFFT3D< ComplexTraits >
- getFPS() : BALL::VIEW::Renderer, BALL::VIEW::RTfactRenderer
- getFrac2Cart() : BALL::CrystalInfo
- getFragment() : BALL::Atom, BALL::FragmentDB
- getFragmentCopy() : BALL::FragmentDB
- getFragmentDB() : BALL::ElectrostaticPotentialCalculator, BALL::Peptides::PeptideBuilder, BALL::ReconstructFragmentProcessor, BALL::VIEW::MainControl, BALL::VIEW::ModularWidget
- getFragments() : BALL::FragmentDB
- getFragmentType() : BALL::FragmentDB
- getFrameBufferFormat() : BALL::VIEW::BufferedRenderer
- getFregr() : BALL::QSAR::RegressionValidation
- getFrustum() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer, BALL::VIEW::RTfactRenderer
- getFullName() : BALL::Atom, BALL::Residue
- getFullyFlexibleResidues() : BALL::FlexDefinition
- getFunction() : BALL::CubicFunction< Function, DataType >, BALL::MutablePower< Function, DataType >, BALL::NumericalIntegrator< Function, DataType >, BALL::Reciprocal< Function, DataType >, BALL::SquareFunction< Function, DataType >
- getFunctionalGroupNames() : BALL::MolecularSimilarity
- getGene() : BALL::GeneticIndividual
- getGeometricObjects() : BALL::VIEW::ModelProcessor, BALL::VIEW::Representation
- getGLErrorString() : BALL::VIEW::GLRenderWindow
- getGlobalPeak_() : BALL::GeometricFit
- getGLRenderer() : BALL::VIEW::Scene
- getGLSettings() : BALL::VIEW::StageSettings
- getGradient() : BALL::EnergyMinimizer
- getGreen() : BALL::VIEW::ColorRGBA
- getGrid() : BALL::VIEW::ContourSurfaceDialog, BALL::VIEW::GridVisualisation, BALL::VIEW::RaytraceableContourSurfaceDialog
- getGridAtomTypeName() : BALL::GridBasedScoring
- getGridContainer() : BALL::PharmacophoreConstraint
- getGridCoordinates() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getGridMaxValue() : BALL::VIEW::RaytraceableGrid
- getGridMinValue() : BALL::VIEW::RaytraceableGrid
- getGridScore() : BALL::ScoreGridSet
- getGroup() : BALL::Element
- getGuestLayout() : BALL::VIEW::DockWidget
- getHA2_HBondLen_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- getHA_HBondLen_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- getHandle() : BALL::Object
- getHashGrid() : BALL::ScoreGridSet, BALL::ScoringFunction
- getHAtom() : BALL::CHPI::CHGroup, BALL::CHPISlick::CHGroup
- getHBonds() : BALL::HBondProcessor
- getHBondsRadius() : BALL::VIEW::ModelSettingsDialog
- getHeader() : BALL::Bruker1DFile, BALL::JCAMPFile
- getHeight() : BALL::Composite, BALL::TBox3< T >, BALL::TSimpleBox3< T >, BALL::VIEW::FrameBufferFormat, BALL::VIEW::Renderer
- getHeightVector() : BALL::TBox3< T >
- getHelixColor() : BALL::VIEW::SecondaryStructureColorProcessor
- getHelixRadius() : BALL::VIEW::AddCartoonModel
- getHelpEntryFor() : BALL::VIEW::HelpViewer
- getHighlightedRepresentations() : BALL::VIEW::GeometricControl
- getHN_HBondLen_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- getHTMLView() : BALL::VIEW::HTMLViewDock
- getHue() : BALL::VIEW::ColorHSV
- getHuInvariants() : BALL::Spectrum< DataT, PeakT, PositionT >
- getHybridisationMap() : BALL::HybridisationProcessor
- getHydrogenBondScore() : BALL::SLICKEnergy, BALL::SLICKScore
- getHydrogenTypes_() : BALL::GAFFTypeProcessor
- getHydrophobicColor() : BALL::VIEW::ResidueTypeColorProcessor
- getIcon() : BALL::VIEW::IconLoader, BALL::VIEW::VIEWPlugin
- getIcosaederInterplationSteps() : BALL::VIEW::FieldLinesDialog
- getID() : BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBInfo, BALL::Protein, BALL::Residue
- getId() : BALL::Conformation, BALL::FlexibleMolecule, BALL::UCK
- getIdentifier() : BALL::Embeddable
- getIdentity() : BALL::TMatrix4x4< T >
- getImage() : BALL::VIEW::GLOffscreenTarget
- getImproperTorsionEnergy() : BALL::CharmmFF
- getImprovedFlag() : BALL::StrangLBFGSMinimizer
- getIndex() : BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::RDFParameter, BALL::SnapShot, BALL::TContourSurface< T >::Cube
- getIndex_() : BALL::MMFF94BendParameters, BALL::MMFF94ESParameters, BALL::MMFF94PlaneParameters, BALL::MMFF94StretchBendParameters, BALL::MMFF94TorsionParameters
- getIndexByRow_() : BALL::MMFF94StretchBendParameters
- getIndices() : BALL::ClaverieParameter, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >
- getIndividual() : BALL::GeneticAlgorithm
- getInfoColor() : BALL::VIEW::Stage
- getInformationVisitor_() : BALL::VIEW::MolecularControl
- getINIFile() : BALL::VIEW::MainControl
- getINIFileSectionName() : BALL::VIEW::PreferencesEntry
- getInitialEnergy() : BALL::EnergyMinimizer
- getInitialGradient() : BALL::EnergyMinimizer
- getInputConformations() : BALL::Result
- getInputConformer() : BALL::Result
- getInputIds() : BALL::Result
- getInsertedAtoms() : BALL::ReconstructFragmentProcessor
- getInsertionCode() : BALL::Nucleotide, BALL::Residue
- getInstance_() : BALL::Embeddable
- getInt() : BALL::NamedProperty
- getInteger() : BALL::Options
- getIntensity() : BALL::Peak< PositionType >, BALL::VIEW::LightSource
- getInteractionEnergy() : BALL::MolecularInteractions
- getInteractionModeManager() : BALL::VIEW::Scene
- getInteractionPartners() : BALL::PharmacophoreConstraint
- getInteractions() : BALL::MolecularInteractions
- getInteractionScore() : BALL::PharmacophoreConstraint
- getInteractionTypes() : BALL::PharmacophoreConstraint
- getIntercept() : BALL::ScoringFunction
- getInterpolatedValue() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getInterpolationSteps() : BALL::VIEW::FieldLinesDialog
- getIntersectionPoint() : BALL::RSEdge
- getInterval() : BALL::PiecewiseFunction
- getIntervalIndex() : BALL::PiecewiseFunction
- getIntervals() : BALL::PiecewiseFunction
- getIntValue() : BALL::JCAMPFile
- getInvalidRecords() : BALL::PDBInfo
- getInverse() : BALL::TQuaternion< T >
- getInverseColor() : BALL::VIEW::ColorRGBA
- getIsotope() : BALL::SmilesParser::SPAtom
- getItemValue() : BALL::CIFFile::SaveFrame
- getKey() : BALL::ParameterSection, BALL::ResourceEntry, BALL::VIEW::EditMode, BALL::VIEW::InteractionMode, BALL::VIEW::MoveMode, BALL::VIEW::PickingMode, BALL::VIEW::RotateMode
- getKeyIndex() : BALL::CIFFile::Item
- getKeySequence() : BALL::VIEW::EditSingleShortcut
- getKineticEnergy() : BALL::MolecularDynamics, BALL::SnapShot
- getKw() : BALL::QSAR::ALLModel
- getLanguageChanged() : BALL::VIEW::MainControlPreferences
- getLargestComponent() : BALL::ConnectedComponentsProcessor
- getLastChild() : BALL::Composite
- getLastColor() : BALL::VIEW::ResidueNumberColorProcessor
- getLastHighLightedMenuEntry() : BALL::VIEW::MainControl
- getLastIndex() : BALL::Substring
- getLastPosition() : BALL::SmartsMatcher::RecStructPool_
- getLatentVariables() : BALL::QSAR::LatentVariableModel
- getLayers() : BALL::BindingPocketProcessor
- getLeftEyeGeometry() : BALL::VIEW::StageSettings
- getLeftEyeScreenNumber() : BALL::VIEW::StageSettings
- getLength() : BALL::Bond, BALL::HBondProcessor::HBond, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::Tube, BALL::VIEW::TwoColoredTube
- getLevel() : BALL::LogStream
- getLigand() : BALL::DockingAlgorithm, BALL::DockProblem, BALL::IMGDock, BALL::ScoringFunction
- getLigandCenter() : BALL::ScoringFunction
- getLigandConformationId() : BALL::Result::ResultData
- getLigandRadius() : BALL::ScoringFunction
- getLightSource() : BALL::VIEW::Stage
- getLightSources() : BALL::VIEW::Stage
- getLine() : BALL::Exception::GeneralException, BALL::INIFile, BALL::LineBasedFile
- getline() : BALL::String
- getLineLevel() : BALL::LogStream
- getLineNumber() : BALL::LineBasedFile
- getLineText() : BALL::LogStream
- getLineTime() : BALL::LogStream
- getLinkSet() : BALL::ConnectedToPredicate::CTPNode
- getList() : BALL::CommandlineParser
- getLoadings() : BALL::QSAR::LatentVariableModel
- getLockingWidget() : BALL::VIEW::MainControl
- getLoggingFilename() : BALL::VIEW::MainControl
- getLogicalOperator() : BALL::SmartsParser::SPEdge, BALL::SmartsParser::SPNode
- getLookAtPosition() : BALL::VIEW::Camera
- getLookUpVector() : BALL::VIEW::Camera
- getLower() : BALL::BoundingBoxProcessor
- getLowerBound() : BALL::CubicSpline1D, BALL::LineSearch
- getLowerDerivative() : BALL::CubicSpline1D
- getLowerIndex() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getLowestCommonAncestor() : BALL::Composite
- getMainAction() : BALL::VIEW::InteractionMode
- getMainControl() : BALL::VIEW::MainControl, BALL::VIEW::ModularWidget
- getMajorRadiusOfTorus() : BALL::RSEdge
- getMajorRevision() : BALL::VersionInfo
- getMassCenter_() : BALL::GeometricFit
- getMaterial() : BALL::VIEW::Stage
- getMaterialSettings() : BALL::VIEW::Scene
- getMatrix() : BALL::VIEW::TransformationMessage
- getMaxBondLength_() : BALL::BuildBondsProcessor
- getMaxColor() : BALL::VIEW::GridColorWidget, BALL::VIEW::InterpolateColorProcessor
- getMaxDistanceColor() : BALL::VIEW::AtomDistanceColorProcessor
- getMaxError() : BALL::QSAR::RegressionValidation
- getMaxGradient() : BALL::EnergyMinimizer, BALL::VIEW::MinimizationDialog
- getMaximalNumberOfIterations() : BALL::MolecularDynamics
- getMaximalRadius() : BALL::ReducedSurface
- getMaximalSimulationTime() : BALL::MolecularDynamics
- getMaximum() : BALL::MPISupport
- getMaximumDisplacement() : BALL::EnergyMinimizer
- getMaximumNumberOfErrors() : BALL::ForceField, BALL::ScoringFunction
- getMaximumUnassignedAtoms() : BALL::AssignBaseProcessor, BALL::Templates
- getMaximumValence_() : BALL::Kekuliser
- getMaxIndex() : BALL::TFFT1D< ComplexTraits >
- getMaxIntensity() : BALL::PeakList< PT >
- getMaxIterations() : BALL::VIEW::MinimizationDialog
- getMaxLength() : BALL::VIEW::ForceModel
- getMaxMaxColor() : BALL::VIEW::GridColorWidget
- getMaxNumberOfIterations() : BALL::EnergyMinimizer
- getMaxNumOfColumns() : BALL::ShiftedLVMMMinimizer
- getMaxNumOfStoredVectPairs() : BALL::StrangLBFGSMinimizer
- getMaxSameEnergy() : BALL::EnergyMinimizer
- getMaxSteps() : BALL::LineSearch, BALL::VIEW::FieldLinesDialog
- getMaxValue() : BALL::VIEW::GridColorWidget, BALL::VIEW::InterpolateColorProcessor
- getMaxXIndex() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getMaxYIndex() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getMaxZIndex() : BALL::TFFT3D< ComplexTraits >
- getMDSimulationDialog() : BALL::VIEW::MolecularStructure
- getMean() : BALL::QSAR::Statistics
- getMembers() : BALL::VIEW::PyWidget
- getMenuHint() : BALL::VIEW::MainControl
- getMesh() : BALL::VIEW::MeshBuffer
- getMessage() : BALL::Exception::GeneralException, BALL::VIEW::LogEvent, BALL::VIEW::MessageEvent, BALL::VIEW::NotificationEvent
- getMethod() : BALL::Result
- getMethodString() : BALL::Result
- getMicroSeconds() : BALL::PreciseTime
- getMidColor() : BALL::VIEW::GridColorWidget
- getMiddleColor() : BALL::VIEW::ResidueNumberColorProcessor
- getMiddleVertex() : BALL::VIEW::TwoColoredLine, BALL::VIEW::TwoColoredTube
- getMidValue() : BALL::VIEW::GridColorWidget
- getMinAtomsComponents() : BALL::ConnectedComponentsProcessor
- getMinBondLength_() : BALL::BuildBondsProcessor
- getMinColor() : BALL::VIEW::GridColorWidget, BALL::VIEW::InterpolateColorProcessor
- getMinimizationDialog() : BALL::VIEW::MolecularStructure
- getMinimum() : BALL::MPISupport
- getMinIntensity() : BALL::PeakList< PT >
- getMinMinColor() : BALL::VIEW::GridColorWidget
- getMinorRevision() : BALL::VersionInfo
- getMinValue() : BALL::VIEW::GridColorWidget, BALL::VIEW::InterpolateColorProcessor
- getMMFF94() : BALL::VIEW::MolecularStructure
- getMMFF94ConfigurationDialog() : BALL::VIEW::MolecularStructure
- getMode() : BALL::VIEW::InterpolateColorProcessor, BALL::VIEW::UIOperationMode
- getModelBuildTime() : BALL::VIEW::Representation
- getModelInformation() : BALL::VIEW::MainControl, BALL::VIEW::Representation
- getModelName() : BALL::VIEW::ModelInformation
- getModelNo() : BALL::QSAR::Registry
- getModelProcessor() : BALL::VIEW::Representation
- getModelType() : BALL::VIEW::CreateRepresentationMessage, BALL::VIEW::Representation
- getModificationTime() : BALL::Composite
- getModifySurfaceDialog() : BALL::VIEW::GeometricControl
- getModuleList() : BALL::ShiftModel
- getModulus() : BALL::EnumeratorIndex
- getMolecularControlSelection() : BALL::VIEW::MainControl
- getMolecularInformation() : BALL::NMRStarFile
- getMolecule() : BALL::Atom, BALL::Molecule, BALL::System
- getMoleculeCopy() : BALL::FragmentDB
- getMonomericPolymer() : BALL::NMRStarFile
- getMonomericPolymers() : BALL::NMRStarFile
- getMonteCarloNumberLines() : BALL::VIEW::FieldLinesDialog
- getMouseSensitivity() : BALL::VIEW::Scene
- getMouseWheelSensitivity() : BALL::VIEW::Scene
- getMoveModeAction_() : BALL::VIEW::MoveMode
- getMutations() : BALL::SideChainPlacementProcessor
- getName() : BALL::Atom, BALL::AtomContainer, BALL::BALLPlugin, BALL::Bond, BALL::Constraint, BALL::Descriptor, BALL::DockingAlgorithm, BALL::Element, BALL::Exception::GeneralException, BALL::File, BALL::ForceField, BALL::ForceFieldComponent, BALL::GenericParameter, BALL::INIFile::Section, BALL::MolecularInformation, BALL::NamedProperty, BALL::Options, BALL::PDBInfo, BALL::Rescoring, BALL::ResidueRotamerSet, BALL::ScoringComponent, BALL::ScoringFunction, BALL::ShiftModule, BALL::SolventDescriptor, BALL::VIEW::Dataset, BALL::VIEW::EditMode, BALL::VIEW::GLRenderer, BALL::VIEW::InteractionMode, BALL::VIEW::MoveMode, BALL::VIEW::PickingMode, BALL::VIEW::PropEditorWidget, BALL::VIEW::Representation, BALL::VIEW::RotateMode, BALL::VIEW::VIEWPlugin
- getNamedProperty() : BALL::PropertyManager
- getNameFromFileName_() : BALL::VIEW::DatasetController
- getNames() : BALL::VIEW::ColorTable
- getNamesTitle() : BALL::VIEW::ColorTable
- getNamingStandard() : BALL::FragmentDB, BALL::FragmentDB::NormalizeNamesProcessor
- getNamingStandards() : BALL::FragmentDB
- getNCS() : BALL::CrystalInfo
- getNearestBackboneTorsion_() : BALL::RotamerLibrary
- getNearestBondOrder_() : BALL::BuildBondsProcessor
- getNeedsSSSR() : BALL::SmartsParser
- getNegate() : BALL::ExpressionTree
- getNeighbours() : BALL::GRAPH::UndoEliminateOperation< UndirectedGraph >
- getNewHandle() : BALL::Object
- getNext() : BALL::Composite
- getNextContourLine() : BALL::TContour< T >
- getNextEntry() : BALL::Directory
- getNextFree() : BALL::SmartsMatcher::RecStructPool_
- getNextHandle() : BALL::Object
- getNextMinimumBackTracker_() : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- getNextPoint() : BALL::TContourLine< T >
- getNextPowerOfTwo_() : BALL::VIEW::RegularData3DController
- getNiceTreeDecompositions() : BALL::TreeWidth< UndirectedGraph >
- getNitrogenTypes_() : BALL::GAFFTypeProcessor
- getNMRAtomDataSet() : BALL::NMRStarFile::BALLToBMRBMapper
- getNMRData() : BALL::NMRStarFile
- getNMRSpectrometer() : BALL::NMRStarFile
- getNMRSpectrometerByName() : BALL::NMRStarFile
- getNMRSpectrometerFieldStrength() : BALL::NMRStarFile
- getNMRSpectrometerManufacturer() : BALL::NMRStarFile
- getNMRSpectrometers() : BALL::NMRStarFile
- getNMRStarFile() : BALL::NMRStarFile::BALLToBMRBMapper
- getNoComponents() : BALL::QSAR::KPLSModel, BALL::QSAR::PLSModel
- getNode() : BALL::TSimpleMolecularGraph< Node, Edge >
- getNodes() : BALL::SmartsParser
- getNoDescriptors() : BALL::QSAR::QSARData
- getNoLigandAtoms() : BALL::ScoringFunction
- getNonBondedData() : BALL::MMFF94NonBonded
- getNonbondedEnergy() : BALL::AmberFF, BALL::CharmmFF, BALL::MMFF94
- getNoNeighboringReceptorAtoms() : BALL::GridBasedScoring, BALL::ScoringFunction
- getNonpolarSolvationScore() : BALL::SLICKEnergy, BALL::SLICKScore
- getNoOfAtoms() : BALL::Conformation
- getNoOrthoComponents() : BALL::QSAR::OPLSModel
- getNoResponseVariables() : BALL::QSAR::BayesModel, BALL::QSAR::NBModel, BALL::QSAR::QSARData, BALL::QSAR::SNBModel
- getNormal() : BALL::RSFace, BALL::SESVertex, BALL::TrianglePoint, BALL::TSurface< T >, BALL::VIEW::ClippingPlane, BALL::VIEW::GridVisualisation
- getNormal_() : BALL::AddHydrogenProcessor
- getNormalizationParameters() : BALL::ScoringComponent
- getNormalMomentsDifference() : BALL::Spectrum< DataT, PeakT, PositionT >
- getNormalVector() : BALL::CHPI::AromaticRing, BALL::CHPISlick::AromaticRing
- getNoSubstances() : BALL::QSAR::QSARData
- getNot() : BALL::SmartsParser::SPNode
- getNTerminal() : BALL::Chain, BALL::Protein, BALL::SecondaryStructure
- getNucleicAcid() : BALL::Nucleotide
- getNucleotide() : BALL::NucleicAcid
- getNullDistanceColor() : BALL::VIEW::AtomDistanceColorProcessor
- getNumberDensity() : BALL::SolventDescriptor
- getNumberOfAddedHydrogens() : BALL::AddHydrogenProcessor, BALL::AssignBondOrderProcessor
- getNumberOfAssignments() : BALL::AssignRadiusProcessor
- getNumberOfATOMRecords() : BALL::PDBInfo
- getNumberOfAtoms() : BALL::ForceField, BALL::NMRStarFile, BALL::SnapShot, BALL::TrajectoryFile
- getNumberOfAtomTypes() : BALL::SolventDescriptor
- getNumberOfBondsBuilt() : BALL::BuildBondsProcessor, BALL::FragmentDB::BuildBondsProcessor
- getNumberOfChemicalUnits() : BALL::NMRStarFile::MolecularSystem
- getNumberOfChildren() : BALL::ConnectedToPredicate::CTPNode
- getNumberOfClasses() : BALL::PersistenceManager
- getNumberOfClusters() : BALL::PoseClustering
- getNumberOfColors() : BALL::VIEW::ColorMap
- getNumberOfComposites() : BALL::VIEW::CompositeManager
- getNumberOfComputedSolutions() : BALL::AssignBondOrderProcessor
- getNumberOfConformations() : BALL::FlexibleMolecule
- getNumberOfConnectedComponents() : BALL::ConnectedComponentsProcessor
- getNumberOfDetectedDisulfidBonds() : BALL::DisulfidBondProcessor
- getNumberOfEdges() : BALL::TriangulatedSurface, BALL::TSimpleMolecularGraph< Node, Edge >
- getNumberOfEnergyProcessors() : BALL::ComposedEnergyProcessor
- getNumberOfErrors() : BALL::AssignRadiusProcessor
- getNumberOfFragments() : BALL::FragmentDistanceCollector
- getNumberOfGaps() : BALL::NMRStarFile::BALLToBMRBMapper
- getNumberOfHETATMRecords() : BALL::PDBInfo
- getNumberOfHybridisationStatesSet() : BALL::HybridisationProcessor
- getNumberOfImplicitHydrogens() : BALL::SmartsParser::SPAtom
- getNumberOfInsertedAtoms() : BALL::ReconstructFragmentProcessor
- getNumberOfInverseTransforms() : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getNumberOfIterations() : BALL::EnergyMinimizer, BALL::FDPB, BALL::MolecularDynamics
- getNumberOfKeys() : BALL::ParameterSection
- getNumberOfLines() : BALL::INIFile, BALL::LogStream
- getNumberOfMismatches() : BALL::NMRStarFile::BALLToBMRBMapper
- getNumberOfModels() : BALL::PDBInfo
- getNumberOfMonomericPolymers() : BALL::NMRStarFile
- getNumberOfMovableAtoms() : BALL::ForceField
- getNumberOfNCSSymOps() : BALL::CrystalInfo
- getNumberOfNMRSpectrometers() : BALL::NMRStarFile
- getNumberOfNodeExpansions() : BALL::AssignBondOrderProcessor, BALL::BondOrderAssignment
- getNumberOfNodeExpansions_() : BALL::AssignBondOrderProcessor
- getNumberOfNodes() : BALL::TSimpleMolecularGraph< Node, Edge >
- getNumberOfNormals() : BALL::TSurface< T >
- getNumberOfPartners() : BALL::GAFFCESParser::CESelementConnectionPredicate, BALL::GAFFCESParser::CESwildcardsConnectionPredicate
- getNumberOfPoints() : BALL::TriangulatedSurface
- getNumberOfPoses() : BALL::PoseClustering
- getNumberOfRecords() : BALL::PDBInfo
- getNumberOfRepresentations() : BALL::VIEW::RepresentationManager
- getNumberOfResidueTorsions() : BALL::ResidueTorsions
- getNumberOfRingSystems() : BALL::RingAnalyser
- getNumberOfRotamers() : BALL::ResidueRotamerSet, BALL::RotamerLibrary
- getNumberOfRotamerSets() : BALL::RotamerLibrary
- getNumberOfSampleConditions() : BALL::NMRStarFile
- getNumberOfSamples() : BALL::NMRStarFile
- getNumberOfSections() : BALL::INIFile
- getNumberOfSelectedAtoms() : BALL::Selector
- getNumberOfSets() : BALL::MOL2File
- getNumberOfShiftReferenceSets() : BALL::NMRStarFile
- getNumberOfShiftsAssigned() : BALL::NMRStarFile
- getNumberOfSnapShots() : BALL::TrajectoryFile, BALL::TRRFile
- getNumberOfSnapShotsInBuffer() : BALL::SnapShotManager
- getNumberOfSplines() : BALL::CubicSpline2D
- getNumberOfSteps() : BALL::VIEW::MolecularDynamicsDialog
- getNumberOfSymOps() : BALL::CrystalInfo
- getNumberOfTorsions() : BALL::ResidueRotamerSet
- getNumberOfTriangles() : BALL::TriangulatedSurface, BALL::TSurface< T >
- getNumberOfTypes() : BALL::AtomTypes
- getNumberOfUnassignedAtoms() : BALL::AssignBaseProcessor, BALL::Templates
- getNumberOfVariables() : BALL::ParameterSection
- getNumberOfVertices() : BALL::TSurface< T >
- getNumChannels() : BALL::VIEW::PixelFormat
- getNumLevels() : BALL::VIEW::GridColorWidget
- getO_HBondLen_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- getObject() : BALL::NamedProperty, BALL::VIEW::GLRenderer, BALL::VIEW::RegisterHelpSystemMessage
- getObjectCreator() : BALL::VIEW::ServerWidget
- getObjectHeader() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- getOccupancy() : BALL::PDBAtom
- getOffset() : BALL::VIEW::ForceModel
- getOmega() : BALL::Peptides::AminoAcidDescriptor
- getOpenGLVersion() : BALL::VIEW::GLRenderer
- getOpenMode() : BALL::File
- getOppositeEdge() : BALL::GraphTriangle< Vertex, Edge, Face >
- getOppositeVertex() : BALL::GraphTriangle< Vertex, Edge, Face >
- getOptions() : BALL::AmberEvaluation, BALL::BinaryFingerprintMethods, BALL::ForceFieldEvaluation, BALL::ScoringFunction, BALL::VIEW::GeometricFitDialog
- getOptionsToModify() : BALL::ScoringFunction
- getOrder() : BALL::Bond
- getOrientation() : BALL::GeometricFit
- getOrigin() : BALL::HashGrid3< Item >, BALL::ScoreGridSet, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::TContourSurface< T >::Cube, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::HeadTrackingEvent, BALL::VIEW::MotionTrackingEvent
- getOriginalName() : BALL::File
- getOrthogonalProjection() : BALL::TVector3< T >
- getOrthographicZoom() : BALL::VIEW::GLRenderer
- getOtherColor() : BALL::VIEW::ResidueTypeColorProcessor
- getOutOfPlaneBends() : BALL::MMFF94OutOfPlaneBend
- getOutputConformations() : BALL::Result
- getOutputData() : BALL::Result
- getOutputIds() : BALL::Result
- getOxygenTypes_() : BALL::GAFFTypeProcessor
- getParameterDescription() : BALL::Options
- getParameterFile() : BALL::Parameters
- getParameters() : BALL::Bruker1DFile, BALL::CharmmEEF1, BALL::ClaverieParameter, BALL::CosineTorsion, BALL::ForceField, BALL::LennardJones, BALL::MMFF94VDWParameters, BALL::Potential1210, BALL::QSAR::ALLModel, BALL::QSAR::GPModel, BALL::QSAR::KNNModel, BALL::QSAR::KPCRModel, BALL::QSAR::KPLSModel, BALL::QSAR::LDAModel, BALL::QSAR::LibsvmModel, BALL::QSAR::Model, BALL::QSAR::NBModel, BALL::QSAR::OPLSModel, BALL::QSAR::PCRModel, BALL::QSAR::PLSModel, BALL::QSAR::RRModel, BALL::QSAR::SNBModel, BALL::QuadraticAngleBend, BALL::QuadraticBondStretch, BALL::QuadraticImproperTorsion, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::ShiftModel, BALL::ShiftModule
- getParent() : BALL::Composite, BALL::Conformation, BALL::ConformationSet, BALL::ConnectedToPredicate::CTPNode, BALL::FlexibleMolecule, BALL::ResourceEntry, BALL::VIEW::ConnectionObject
- getPartialCharge() : BALL::MMFF94ESParameters
- getPartner() : BALL::Bond
- getPartnerAtom() : BALL::Atom
- getPartners_() : BALL::AddHydrogenProcessor
- getPartnerSPNode() : BALL::SmartsParser::SPEdge
- getPath() : BALL::Directory, BALL::ResourceEntry
- getPathLength() : BALL::Composite
- getPattern() : BALL::RegularExpression
- getPBCI() : BALL::MMFF94ESParameters
- getPDBAtom() : BALL::Chain, BALL::Protein, BALL::Residue, BALL::SecondaryStructure
- getPeakList() : BALL::Bruker2DFile, BALL::CreateSpectrumProcessor, BALL::Experiment< PeakListType >
- getPeaks() : BALL::ShiftModel1D, BALL::ShiftModel2D
- getPeelingOrder() : BALL::RingAnalyser
- getPenalty_() : BALL::Kekuliser
- getPenaltyClass_() : BALL::AssignBondOrderProcessor
- getPenaltyFor_() : BALL::FPTBondOrderStrategy
- getPeriod() : BALL::Element
- getPeriodicBoundary() : BALL::HINFile
- getPerpendicularNormalization() : BALL::TVector3< T >
- getPharmacophoreConstraint() : BALL::ScoreGridSet
- getPhi() : BALL::MMFF94ESParameters, BALL::Peptides::AminoAcidDescriptor
- getPhysSpaceMax() : BALL::TFFT1D< ComplexTraits >
- getPhysSpaceMaxX() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMaxY() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMaxZ() : BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMin() : BALL::TFFT1D< ComplexTraits >
- getPhysSpaceMinX() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMinY() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMinZ() : BALL::TFFT3D< ComplexTraits >
- getPhysStepWidth() : BALL::TFFT1D< ComplexTraits >
- getPhysStepWidthX() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getPhysStepWidthY() : BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- getPhysStepWidthZ() : BALL::TFFT3D< ComplexTraits >
- getPitch() : BALL::VIEW::FrameBufferFormat
- getPixelFormat() : BALL::VIEW::FrameBufferFormat
- getPlaneEnergy() : BALL::MMFF94
- getPluginCount() : BALL::PluginManager
- getPluginDirectories() : BALL::PluginManager
- getPluginInstance() : BALL::PluginManager
- getPoint() : BALL::SASVertex, BALL::SESVertex, BALL::TBox3< T >, BALL::Triangle, BALL::TriangleEdge, BALL::TrianglePoint, BALL::VIEW::ClippingPlane, BALL::VIEW::GridVisualisation
- getPolarColor() : BALL::VIEW::ResidueTypeColorProcessor
- getPolarSolvationScore() : BALL::SLICKEnergy, BALL::SLICKScore
- getPort() : BALL::TCPServer, BALL::VIEW::ServerPreferences, BALL::VIEW::ServerWidget
- getPose() : BALL::PoseClustering
- getPoses() : BALL::PoseClustering
- getPosition() : BALL::Atom::BondIteratorTraits, BALL::Atom, BALL::Bruker2DFile, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::CompositeIteratorTraits, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashSet< Key >::IteratorTraits, BALL::INIFile::IteratorTraits_, BALL::Peak< PositionType >, BALL::ResourceEntry::IteratorTraits_, BALL::VIEW::LightSource, BALL::VIEW::Sphere
- getPosition_() : BALL::VIEW::LightSettings
- getPositionAddress() : BALL::VIEW::Sphere
- getPositions() : BALL::CubicSpline1D
- getPotentialEnergy() : BALL::MolecularDynamics, BALL::SnapShot
- getPrecision() : BALL::TRRFile
- getPredicate() : BALL::CompositeIteratorTraits, BALL::Expression, BALL::ExpressionTree
- getPreferences() : BALL::VIEW::MainControl
- getPrefix() : BALL::RuleEvaluator
- getPrevious() : BALL::Composite
- getProbeRadius() : BALL::ReducedSurface, BALL::SurfaceProcessor, BALL::VIEW::AddSurfaceModel
- getProduct() : BALL::MPISupport
- getProgress() : BALL::DockingAlgorithm, BALL::EvolutionaryDocking, BALL::GeometricFit
- getProject() : BALL::VIEW::HelpViewer, BALL::VIEW::ShowHelpMessage
- getProjectionMode() : BALL::VIEW::Camera
- getPrompt_() : BALL::VIEW::PyWidget
- getProperties() : BALL::Conformation, BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::VIEW::Representation
- getProperTorsionEnergy() : BALL::CharmmFF
- getProperty() : BALL::PropertyManager, BALL::SmartsParser::SPAtom
- getProtein() : BALL::Chain, BALL::PDBAtom, BALL::Residue, BALL::SecondaryStructure, BALL::System, BALL::VIEW::PeptideDialog
- getProteinName() : BALL::Peptides::PeptideBuilder
- getPsi() : BALL::Peptides::AminoAcidDescriptor
- getQ2() : BALL::QSAR::RegressionValidation
- getQColor() : BALL::VIEW::ColorRGBA
- getQueryLibrarySize() : BALL::BinaryFingerprintMethods
- getQueueSize() : BALL::AssignBondOrderProcessor, BALL::BondOrderAssignment
- getQueueSize_() : BALL::AssignBondOrderProcessor
- getR() : BALL::MMFF94VDWParameters
- getR2() : BALL::QSAR::RegressionValidation
- getRadius() : BALL::Atom, BALL::VIEW::HBondModelProcessor, BALL::VIEW::Sphere, BALL::VIEW::Tube, BALL::VIEW::TwoColoredTube
- getRadius_() : BALL::GeometricFit
- getRange() : BALL::PiecewiseFunction, BALL::RadialDistributionFunction
- getRank() : BALL::MPISupport
- getRawScore() : BALL::ScoringComponent
- getRDF() : BALL::RDFIntegrator, BALL::RDFParameter, BALL::RDFSection
- getRDFIntegrator() : BALL::Pair6_12InteractionEnergyProcessor
- getRDFParameter() : BALL::Pair6_12InteractionEnergyProcessor
- getReactionFieldEnergy() : BALL::FDPB
- getReal() : BALL::Options
- getReceiver() : BALL::VIEW::InputDeviceDriver
- getReceptor() : BALL::ScoringFunction
- getReceptorConformationId() : BALL::Result::ResultData
- getRecordIndices() : BALL::PDBInfo
- getRecordNumber() : BALL::PDBFile
- getRecordString() : BALL::PDBFile
- getRecordType() : BALL::PDBFile
- getRed() : BALL::VIEW::ColorRGBA
- getReducedConformationSet() : BALL::PoseClustering
- getReferenceFragment() : BALL::FragmentDB
- getReferenceLigand() : BALL::DockingAlgorithm
- getReferenceLigandCenter() : BALL::EvolutionaryDocking
- getRefresh() : BALL::VIEW::MinimizationDialog
- getRegistry() : BALL::QSAR::RegistryEntry
- getRegressionStatisticName() : BALL::QSAR::Registry
- getRegressionStatistics() : BALL::QSAR::Registry
- getRelativeIndex() : BALL::GraphTriangle< Vertex, Edge, Face >
- getRemotenessIndicator() : BALL::PDBAtom
- getRenderer() : BALL::VIEW::CudaVolumeRenderer, BALL::VIEW::GLRenderer, BALL::VIEW::RaytracingRenderer, BALL::VIEW::RenderToBufferFinishedEvent, BALL::VIEW::RTfactRenderer
- getRendererType() : BALL::VIEW::RenderSetup
- getRenderMode() : BALL::VIEW::GLRenderer
- getReply_() : BALL::SimpleDownloaderHelper::DLThread, BALL::SimpleDownloaderHelper::HelperThread, BALL::SimpleDownloaderHelper::UPThread
- getRepresentation() : BALL::RadialDistributionFunction, BALL::VIEW::DisplayProperties, BALL::VIEW::RepresentationMessage, BALL::VIEW::UpdateRepresentationThread
- getRepresentationManager() : BALL::VIEW::MainControl
- getRepresentations() : BALL::VIEW::ClippingPlane, BALL::VIEW::RepresentationManager
- getRepresentationsOf() : BALL::VIEW::RepresentationManager
- getResidue() : BALL::Atom, BALL::Chain, BALL::FragmentDB, BALL::PDBAtom, BALL::Protein, BALL::SecondaryStructure
- getResidueByID() : BALL::Protein
- getResidueCopy() : BALL::FragmentDB
- getResidueData() : BALL::HBondProcessor
- getResidueSequence() : BALL::NMRStarFile
- getResult() : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >, BALL::ScoringOptimizer
- getResults() : BALL::AmberFF, BALL::CharmmFF, BALL::DockResultFile, BALL::ForceField, BALL::MMFF94
- getRightEyeGeometry() : BALL::VIEW::StageSettings
- getRightEyeScreenNumber() : BALL::VIEW::StageSettings
- getRightVector() : BALL::TBox3< T >, BALL::VIEW::Camera
- getRigidRMSD() : BALL::PoseClustering
- getRigidTransformations() : BALL::PoseClustering
- getRing() : BALL::CHPI::AromaticRing, BALL::CHPISlick::AromaticRing
- getRingAtoms() : BALL::RingFinder
- getRingConnections() : BALL::SmartsParser
- getRings() : BALL::MMFF94
- getRingSystem() : BALL::RingAnalyser
- getRMSD_() : BALL::PoseClustering
- getRMSGradient() : BALL::ForceField
- getRoot() : BALL::Composite, BALL::ResourceEntry, BALL::ResourceFile, BALL::SmartsParser, BALL::VIEW::ConnectionObject
- getRotamer() : BALL::ResidueRotamerSet
- getRotamerFlexibleResidues() : BALL::FlexDefinition
- getRotamerSet() : BALL::RotamerLibrary
- getRotatableLigandBonds() : BALL::ScoringFunction
- getRotation() : BALL::VIEW::TransformationEvent6D
- getRotationMatrix() : BALL::TQuaternion< T >
- getRotationNum() : BALL::GeometricFit::RotationAngles_
- getRow() : BALL::TMatrix4x4< T >
- getRowCovariance() : BALL::QSAR::Statistics
- getRowMean() : BALL::QSAR::Statistics
- getRowStddev() : BALL::QSAR::Statistics
- getRowVariance() : BALL::QSAR::Statistics
- getRS() : BALL::SolventAccessibleSurface
- getRSEdge() : BALL::SESEdge, BALL::SESFace
- getRSFace() : BALL::SESFace
- getRSVertex() : BALL::SESFace
- getSample() : BALL::NMRStarFile
- getSampleCondition() : BALL::NMRStarFile
- getSampleConditionByName() : BALL::NMRStarFile
- getSampleConditions() : BALL::NMRStarFile
- getSamples() : BALL::NMRStarFile
- getSaturation() : BALL::VIEW::ColorHSV
- getSaveframeByIndex() : BALL::CIFFile::Datablock
- getSaveframeByName() : BALL::CIFFile::Datablock
- getSaveframeIndicesByCategory() : BALL::CIFFile::Datablock
- getSaveframesByCategory() : BALL::CIFFile::Datablock
- getScaledScore() : BALL::ScoringComponent
- getScaling() : BALL::VIEW::ForceModel
- getScalingFactors() : BALL::GeneralizedBornModel
- getScene() : BALL::VIEW::AnimationThread
- getScore() : BALL::IMGDock, BALL::PoseClustering, BALL::ScoringFunction
- getScoreContributions() : BALL::ScoringFunction
- getScoreGridSets() : BALL::GridBasedScoring
- getScores() : BALL::DockResult
- getScoring() : BALL::ConformationSet
- getScoringFunction() : BALL::DockingAlgorithm, BALL::ScoringComponent
- getScoringMethod() : BALL::Result::ResultData
- getScoringName() : BALL::DockResult
- getScoringOptions() : BALL::DockResult, BALL::VIEW::DockDialog
- getScreenPosition_() : BALL::VIEW::Scene
- getSecond() : BALL::Addition< First, Second, DataType >, BALL::Division< First, Second, DataType >, BALL::Product< First, Second, DataType >, BALL::Subtraction< First, Second, DataType >
- getSecondaryStructure() : BALL::Atom, BALL::Chain, BALL::Protein, BALL::Residue
- getSecondaryStructure_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- getSecondAtom() : BALL::Bond
- getSecondEdge() : BALL::SmartsParser::SPNode
- getSecondMolecule() : BALL::ScoringFunction
- getSeconds() : BALL::PreciseTime
- getSecondSPEdge() : BALL::SmartsParser::SPEdge
- getSecondSPNode() : BALL::SmartsParser::SPEdge
- getSecondStrand() : BALL::NucleotideMapping
- getSection() : BALL::INIFile, BALL::INIFile::IteratorTraits_
- getSectionFirstLine() : BALL::INIFile
- getSectionLastLine() : BALL::INIFile
- getSectionLength() : BALL::INIFile
- getSectionName() : BALL::ParameterSection
- getSectionNextLine() : BALL::INIFile::IteratorTraits_
- getSeedMode() : BALL::VIEW::FieldLinesDialog
- getSelectedAtoms() : BALL::Selector
- getSelectedDataset() : BALL::VIEW::DatasetController
- getSelectedDatasets() : BALL::VIEW::DatasetController
- getSelectedItems() : BALL::VIEW::GenericControl
- getSelectedModel() : BALL::PDBFile
- getSelectedSystem() : BALL::VIEW::MainControl
- getSelection() : BALL::VIEW::GenericSelectionMessage, BALL::VIEW::GeometricObjectSelectionMessage, BALL::VIEW::MainControl, BALL::VIEW::MolecularControl
- getSelectionSize() : BALL::VIEW::DatasetControl
- getSelectionTime() : BALL::Composite
- getSender() : BALL::VIEW::Message
- getSeparation_() : BALL::GeometricFit
- getSequence() : BALL::VIEW::PeptideDialog
- getServerStatus() : BALL::VIEW::ServerPreferences
- getSet() : BALL::MOL2File
- getSettings() : BALL::VIEW::ColoringSettingsDialog, BALL::VIEW::ModelSettingsDialog, BALL::VIEW::NetworkPreferences
- getSettingsFromString() : BALL::VIEW::DisplayProperties
- getSetupTime() : BALL::ForceField
- getShift() : BALL::Bruker2DFile
- getShiftReferenceSet() : BALL::NMRStarFile
- getShiftReferenceSetByName() : BALL::NMRStarFile
- getShiftReferenceSets() : BALL::NMRStarFile
- getShortcutRegistry() : BALL::VIEW::MainControl
- getSibling() : BALL::Composite
- getSimilarDescriptors() : BALL::QSAR::QSARData
- getSimilarEdge() : BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >
- getSimpleAtomTypes() : BALL::StructurePreparer
- getSimulationThread() : BALL::VIEW::MainControl
- getSimulationTime() : BALL::VIEW::MolecularDynamicsDialog
- getSize() : BALL::BitVector, BALL::EnumeratorIndex, BALL::File, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::HashSet< Key >, BALL::List< Value >, BALL::MPISupport, BALL::ResourceEntry, BALL::ResourceFile, BALL::StringHashMap< Value >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getSizeX() : BALL::HashGrid3< Item >
- getSizeY() : BALL::HashGrid3< Item >
- getSizeZ() : BALL::HashGrid3< Item >
- getSkipDriverChecks() : BALL::VIEW::MainControlPreferences
- getSkippedRecords() : BALL::PDBInfo
- getSmartObject() : BALL::NamedProperty
- getSmoothLines() : BALL::VIEW::GLRenderer
- getSnapShotFrequency() : BALL::EnergyMinimizer, BALL::MolecularDynamics
- getSnapShotManager() : BALL::VIEW::SnapshotVisualisationDialog
- getSolution() : BALL::AssignBondOrderProcessor, BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- getSolvationEnergy() : BALL::CharmmFF, BALL::CharmmNonBonded
- getSolventAtomDescriptorList() : BALL::SolventDescriptor
- getSolventDensity() : BALL::SolventParameter
- getSolventDescription() : BALL::SolventParameter
- getSolventDescriptor() : BALL::Pair6_12InteractionEnergyProcessor, BALL::SolventParameter
- getSolventName() : BALL::SolventParameter
- getSource() : BALL::EdgeItem< Node, Edge >
- getSP2Plane_() : BALL::VIEW::AddBallAndStickModel
- getSpaceGroup() : BALL::CrystalInfo
- getSpaceGroupFilename() : BALL::CrystalGenerator
- getSpacing() : BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::Spectrum< DataT, PeakT, PositionT >, BALL::TContourSurface< T >::Cube, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- getSPAtom() : BALL::SmartsParser::SPNode
- getSPBond() : BALL::SmartsParser::SPEdge
- getSphere() : BALL::ReducedSurface, BALL::SASFace
- getSpheres() : BALL::SurfaceProcessor
- getSpline() : BALL::CubicSpline2D
- getSquareDistance() : BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- getSquaredRigidRMSD() : BALL::PoseClustering
- getSquareLength() : BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::Tube
- getStackPages() : BALL::VIEW::PreferencesEntry
- getStage() : BALL::VIEW::Renderer, BALL::VIEW::Scene, BALL::VIEW::SceneMessage
- getStageSettings() : BALL::VIEW::Scene
- getStandardizedMomentsDifference() : BALL::Spectrum< DataT, PeakT, PositionT >
- getStartCommand() : BALL::CommandlineParser
- getStartSnapshot() : BALL::VIEW::SnapshotVisualisationDialog
- getStartTime() : BALL::CommandlineParser
- getStartupLog() : BALL::PyInterpreter
- getStat() : BALL::QSAR::Validation
- getStaticLigandFragments() : BALL::ScoringFunction
- getStatistics() : BALL::QSAR::RegistryEntry
- getStatName() : BALL::QSAR::RegistryEntry
- getStatus() : BALL::ResidueChecker, BALL::SimpleDownloaderHelper::HelperThread
- getStatusbarText() : BALL::VIEW::MainControl
- getStddev() : BALL::QSAR::Statistics
- getStepsBetweenRefreshs() : BALL::VIEW::MolecularDynamicsDialog
- getStereoMode() : BALL::VIEW::Renderer, BALL::VIEW::StageSettings
- getStereoScreensRendererType() : BALL::VIEW::StageSettings
- getStickRadius() : BALL::VIEW::AddBallAndStickModel
- getSticks() : BALL::Spectrum< DataT, PeakT, PositionT >
- getStickStickRadius() : BALL::VIEW::ModelSettingsDialog
- getStrandColor() : BALL::VIEW::SecondaryStructureColorProcessor
- getStrandHeight() : BALL::VIEW::AddCartoonModel
- getStrandWidth() : BALL::VIEW::AddCartoonModel
- getStretchBendEnergy() : BALL::MMFF94, BALL::MMFF94StretchBend
- getStretchBends() : BALL::MMFF94StretchBend
- getStretchEnergy() : BALL::AmberFF, BALL::CharmmFF, BALL::MMFF94, BALL::MMFF94StretchBend
- getStretches() : BALL::MMFF94StretchBend
- getStretchParameters() : BALL::MMFF94
- getString() : BALL::NamedProperty
- getStringToWildcard() : BALL::GAFFCESParser::CESPredicate
- getSubcategory() : BALL::Options
- getSubstance() : BALL::QSAR::QSARData
- getSubstanceNames() : BALL::QSAR::Model, BALL::QSAR::QSARData
- getSubstanceVector() : BALL::QSAR::Model
- getSubstring() : BALL::String
- getSulfurTypes_() : BALL::GAFFTypeProcessor
- getSum() : BALL::MPISupport
- getSuperAtomContainer() : BALL::AtomContainer, BALL::Molecule
- getSupportedFileFormats() : BALL::VIEW::DatasetController, BALL::VIEW::MolecularFileDialog
- getSupportedFileFormatsList() : BALL::VIEW::MolecularFileDialog
- getSupportedFormats() : BALL::MolFileFactory, BALL::TrajectoryFileFactory
- getSupportedResolution() : BALL::VIEW::BufferedRenderer, BALL::VIEW::RaytracingRenderer
- getSurface() : BALL::NumericalSAS, BALL::SurfaceProcessor, BALL::TBox3< T >, BALL::TSimpleBox3< T >
- getSurfaceDrawingPrecision() : BALL::VIEW::ModelProcessor, BALL::VIEW::Representation
- getSurfaceMap() : BALL::NumericalSAS
- getSurfacePerAtom() : BALL::NumericalSAS
- getSurfaceProbeRadius() : BALL::VIEW::ModelSettingsDialog
- getSwapEndian() : BALL::BinaryFileAdaptor< T >
- getSybylType_() : BALL::MOL2File
- getSymbol() : BALL::ConnectedToPredicate::CTPNode, BALL::Element
- getSymOp() : BALL::CrystalInfo
- getSyntaxTree() : BALL::ExpressionParser
- getSysPath() : BALL::PyInterpreter
- getSystem() : BALL::ConformationSet, BALL::ForceField, BALL::Molecule, BALL::PoseClustering, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::SmilesParser, BALL::SnapShotManager, BALL::VIEW::FDPBDialog, BALL::VIEW::SDWidget
- getSystem1() : BALL::VIEW::DockDialog
- getSystem2() : BALL::VIEW::DockDialog
- getSystemTime() : BALL::Timer
- getTable() : BALL::FPTBondOrderStrategy::DPBackTracking_
- getTarget() : BALL::EdgeItem< Node, Edge >
- getTargetLibrarySize() : BALL::BinaryFingerprintMethods
- getTemperature() : BALL::HINFile, BALL::MolecularDynamics, BALL::VIEW::MolecularDynamicsDialog
- getTemperatureFactor() : BALL::PDBAtom
- getText() : BALL::VIEW::Label, BALL::VIEW::LabelModel
- getTexture() : BALL::VIEW::GridVisualisation
- getTextureIndex_() : BALL::VIEW::GLRenderer
- getThreshold() : BALL::VIEW::ContourSurfaceDialog
- getTime() : BALL::MolecularDynamics, BALL::TimeStamp
- getTimestamp() : BALL::Result
- getTimeStep() : BALL::MolecularDynamics, BALL::VIEW::MolecularDynamicsDialog
- getTimestep() : BALL::TRRFile
- getTimeToLive() : BALL::VIEW::RenderSetup
- getTolerance() : BALL::VIEW::FieldLinesDialog
- getToolInfo() : BALL::Result
- getTorsionEnergy() : BALL::AmberFF, BALL::CharmmFF, BALL::MMFF94
- getTorsionOmega() : BALL::Residue
- getTorsionPhi() : BALL::Residue, BALL::ResidueRotamerSet
- getTorsionPsi() : BALL::Residue, BALL::ResidueRotamerSet
- getTorsions() : BALL::MMFF94Torsion
- getTorsionType() : BALL::MMFF94Torsion
- getTOrtho() : BALL::QSAR::OPLSModel
- getTotalArea() : BALL::NumericalSAS
- getTotalAverage() : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- getTotalCharge() : BALL::AssignBondOrderProcessor, BALL::AssignChargeProcessor
- getTotalCharge_() : BALL::AssignBondOrderProcessor
- getTotalEnergy() : BALL::MolecularDynamics
- getTotalPenalty() : BALL::AssignBondOrderProcessor
- getTotalPenalty_() : BALL::AssignBondOrderProcessor
- getTotalVolume() : BALL::NumericalSAS
- getTrace() : BALL::TMatrix4x4< T >
- getTrainingResult() : BALL::QSAR::RegressionModel
- getTraits() : BALL::BaseIterator< Container, DataType, Position, Traits >
- getTrajectoryFile() : BALL::SnapShotManager, BALL::VIEW::SimulationThread
- getTransform() : BALL::VIEW::HeadTrackingEvent, BALL::VIEW::MotionTrackingEvent
- getTransformation() : BALL::TransformationProcessor
- getTransformationManager() : BALL::File
- getTranslation() : BALL::GeometricFit, BALL::TranslationProcessor, BALL::VIEW::TransformationEvent6D
- getTranslation_() : BALL::GeometricFit
- getTransparency() : BALL::VIEW::ColorProcessor, BALL::VIEW::Representation
- getTriangle() : BALL::TriangleEdge, BALL::TSurface< T >
- getTripleProduct() : BALL::TVector3< T >
- getTubeRadius() : BALL::VIEW::AddBackboneModel, BALL::VIEW::ModelSettingsDialog
- getTurnColor() : BALL::VIEW::SecondaryStructureColorProcessor
- getTurnPoint() : BALL::VIEW::Scene
- getTwoReferenceAtoms() : BALL::ReconstructFragmentProcessor
- getType() : BALL::Atom, BALL::AtomTypes, BALL::Bond, BALL::Constraint, BALL::ExpressionTree, BALL::File, BALL::MolecularInformation, BALL::NamedProperty, BALL::Peptides::AminoAcidDescriptor, BALL::QSAR::Model, BALL::SecondaryStructure, BALL::SESEdge, BALL::SESFace, BALL::SmartsParser::SPAtom::Property, BALL::SurfaceProcessor, BALL::VersionInfo, BALL::VIEW::AddSurfaceModel, BALL::VIEW::CompositeMessage, BALL::VIEW::Dataset, BALL::VIEW::DatasetControl, BALL::VIEW::DatasetController, BALL::VIEW::DatasetMessage, BALL::VIEW::LabelModel, BALL::VIEW::LightSource, BALL::VIEW::MolecularTaskMessage, BALL::VIEW::RepresentationMessage, BALL::VIEW::SceneMessage
- getTypeMap() : BALL::FresnoTypes
- getTypeName() : BALL::Atom, BALL::AtomTypes, BALL::MolecularInformation, BALL::ScoringComponent, BALL::Templates
- getTypeNames() : BALL::GAFFTypeProcessor
- getU() : BALL::QSAR::KPLSModel, BALL::QSAR::PLSModel
- getU_() : BALL::MMFF94Torsion
- getUCK() : BALL::UCK
- getUnassignedAtoms() : BALL::AssignBaseProcessor, BALL::ForceField, BALL::MMFF94ChargeProcessor, BALL::ScoringFunction, BALL::Templates
- getUnassignedBonds() : BALL::Kekuliser
- getUnit() : BALL::Descriptor, BALL::HashGrid3< Item >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- getUnitCellBox() : BALL::CrystalGenerator
- getUnnormalizedFeatureValue() : BALL::QSAR::Model
- getUnnormalizedResponseValue() : BALL::QSAR::Model
- getUnscoredConformations() : BALL::ConformationSet
- getUnsignedChar() : BALL::BitVector
- getUnsignedInt() : BALL::BitVector, BALL::NamedProperty
- getUnsignedLong() : BALL::BitVector
- getUnsignedShort() : BALL::BitVector
- getUpdateFrequency() : BALL::AmberFF, BALL::ForceField, BALL::MMFF94
- getUpdateMethod() : BALL::ConjugateGradientMinimizer, BALL::ShiftedLVMMMinimizer
- getUpdateTime() : BALL::ForceField
- getUpper() : BALL::BoundingBoxProcessor
- getUpperBound() : BALL::CubicSpline1D
- getUpperDerivative() : BALL::CubicSpline1D
- getURL() : BALL::SimpleDownloader, BALL::VIEW::RegisterHelpSystemMessage, BALL::VIEW::ShowHelpMessage
- getUseConjugateGradient() : BALL::VIEW::MinimizationDialog
- getUserHomeDir() : BALL::Directory
- getUserTime() : BALL::Timer
- getUseSelection() : BALL::ForceField
- getUseShiftedLVMM() : BALL::VIEW::MinimizationDialog
- getUseStrangLBFGS() : BALL::VIEW::MinimizationDialog
- getV_() : BALL::MMFF94Torsion
- getValidationName() : BALL::QSAR::Registry
- getValue() : BALL::GeneticAlgorithm, BALL::INIFile, BALL::NumericalIntegrator< Function, DataType >, BALL::ParameterSection, BALL::PreferencesObject, BALL::QuaternionGene, BALL::ResourceEntry, BALL::ResourceFile, BALL::SmartsParser::SPAtom::Property, BALL::VIEW::ColorHSV, BALL::VIEW::ColorTable, BALL::VIEW::HotkeyTable, BALL::VIEW::PreferencesEntry::ExtendedPreferencesObject, BALL::VIEW::ShortcutRegistry
- getValue_() : BALL::VIEW::PreferencesEntry
- getValues() : BALL::CubicSpline1D, BALL::DoubleGene
- getValues_() : BALL::VIEW::LightSettings
- getVanDerWaalsRadius() : BALL::Element
- getVariance() : BALL::QSAR::Statistics
- getVariantNames() : BALL::FragmentDB
- getVDWEnergy() : BALL::MMFF94NonBonded, BALL::PLP
- getVdWEnergy() : BALL::AmberFF, BALL::CharmmFF, BALL::MMFF94
- getVdwEnergy() : BALL::AmberNonBonded, BALL::CharmmNonBonded
- getVDWRadiusFactor() : BALL::VIEW::AddVanDerWaalsModel, BALL::VIEW::ModelSettingsDialog
- getVDWScore() : BALL::SLICKEnergy, BALL::SLICKScore
- getVector() : BALL::Options
- getVelocity() : BALL::Atom
- getVendor() : BALL::VIEW::GLRenderer
- getVerbosity() : BALL::CubicSpline1D
- getVersion() : BALL::PDBFile, BALL::VersionInfo
- getVertex() : BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::MolecularGraph, BALL::ReducedSurface, BALL::SolventAccessibleSurface, BALL::TSurface< T >, BALL::VIEW::Vertex
- getVertex1() : BALL::VIEW::Vertex2
- getVertex1Address() : BALL::VIEW::Vertex2
- getVertex2() : BALL::VIEW::Vertex2
- getVertex2Address() : BALL::VIEW::Vertex2
- getVertexAddress() : BALL::VIEW::Vertex
- getVertices() : BALL::VIEW::Box, BALL::VIEW::Disc, BALL::VIEW::GeometricObject, BALL::VIEW::Label, BALL::VIEW::Line, BALL::VIEW::Mesh, BALL::VIEW::MultiLine, BALL::VIEW::Point, BALL::VIEW::QuadMesh, BALL::VIEW::SimpleBox, BALL::VIEW::Sphere, BALL::VIEW::Tube, BALL::VIEW::TwoColoredLine, BALL::VIEW::TwoColoredTube, BALL::VIEW::Vertex2
- getViewPoint() : BALL::VIEW::Camera
- getViewVector() : BALL::VIEW::Camera
- getVisitedBonds() : BALL::RingFinder
- getVisualizationPose() : BALL::DockingAlgorithm
- getVisualizationPoseScore() : BALL::DockingAlgorithm
- getVolume() : BALL::TBox3< T >, BALL::TSimpleBox3< T >
- getWeight() : BALL::UCK
- getWeights() : BALL::QSAR::LatentVariableModel
- getWidth() : BALL::CreateSpectrumProcessor, BALL::Peak< PositionType >, BALL::TBox3< T >, BALL::TSimpleBox3< T >, BALL::VIEW::FrameBufferFormat, BALL::VIEW::Renderer
- getWildcards() : BALL::GAFFCESParser::CESwildcardsConnectionPredicate, BALL::GAFFCESParser::CESwildcardsPredicate
- getWorkingDir() : BALL::VIEW::MainControl, BALL::VIEW::ModularWidget
- getWOrtho() : BALL::QSAR::OPLSModel
- getXAng() : BALL::GeometricFit::RotationAngles_
- getXDefaultValue() : BALL::CubicSpline2D
- getXDiff_() : BALL::VIEW::InteractionMode
- getXLowerBounds() : BALL::CubicSpline2D
- getXLowerDerivatives() : BALL::CubicSpline2D
- getXScale() : BALL::VIEW::GLRenderer
- getXTol() : BALL::LineSearch
- getXUpperBounds() : BALL::CubicSpline2D
- getXUpperDerivatives() : BALL::CubicSpline2D
- getY() : BALL::QSAR::Model
- getYAng() : BALL::GeometricFit::RotationAngles_
- getYDefaultValue() : BALL::CubicSpline2D
- getYDiff_() : BALL::VIEW::InteractionMode
- getYLowerBound() : BALL::CubicSpline2D
- getYLowerDerivative() : BALL::CubicSpline2D
- getYRandResults() : BALL::QSAR::Validation
- getYScale() : BALL::VIEW::GLRenderer
- getYTransformations() : BALL::QSAR::Model
- getYUpperBound() : BALL::CubicSpline2D
- getYUpperDerivative() : BALL::CubicSpline2D
- getZAng() : BALL::GeometricFit::RotationAngles_
- getZero() : BALL::TMatrix4x4< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- getZEType() : BALL::SmartsParser::SPBond, BALL::SmilesParser::SPBond
- getZScore() : BALL::CrystalInfo
- gi : BALL::MMFF94VDWParameters::VDWEntry
- GL_boxes_list_ : BALL::VIEW::GLRenderer
- gl_format_ : BALL::VIEW::GLRenderWindow
- gl_renderer_ : BALL::VIEW::MeshBuffer, BALL::VIEW::RenderSetup, BALL::VIEW::Scene
- GL_spheres_list_ : BALL::VIEW::GLRenderer
- gl_target_ : BALL::VIEW::RenderSetup
- GL_tubes_list_ : BALL::VIEW::GLRenderer
- GLDisplayList() : BALL::VIEW::GLDisplayList
- GLList : BALL::VIEW::GLDisplayList
- gln_pressed() : BALL::VIEW::PeptideDialog
- GLOBAL_ROTATION : BALL::IMGDock::Default, BALL::IMGDock::Option
- GlobalExceptionHandler() : BALL::Exception::GlobalExceptionHandler
- GLOffscreenTarget() : BALL::VIEW::GLOffscreenTarget
- GLRenderer() : BALL::VIEW::GLRenderer
- GLRenderWindow() : BALL::VIEW::GLRenderWindow
- glu_pressed() : BALL::VIEW::PeptideDialog
- GLU_quadric_obj_ : BALL::VIEW::GLRenderer
- gly_pressed() : BALL::VIEW::PeptideDialog
- gmf_is_closed_ : BALL::GenericMolFile
- GOLD : BALL::Element
- gotoLine() : BALL::LineBasedFile
- gp_ : BALL::GeneticAlgorithm
- GPModel() : BALL::QSAR::GPModel
- grad_diff_ : BALL::ShiftedLVMMMinimizer
- Gradient() : BALL::Gradient
- graph : BALL::GRAPH::UndoEliminateOperation< UndirectedGraph >
- GRAPH::PostOrderFolding< TreeDecomposition, TreeDecompositionBag, DPTable_ *, FPTBondOrderAssignment_ > : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
- graph_ : BALL::FPTBondOrderStrategy::EdgeComparator_, BALL::TreeWidthImplementation< UndirectedGraph >::MinorMinWidthCriterion, BALL::TreeWidthImplementation< UndirectedGraph >::MinorMinWidthReducer, BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >
- GraphEdge() : BALL::GraphEdge< Vertex, Edge, Face >
- GraphEdge< Vertex, Edge, Face > : BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >
- GraphFace() : BALL::GraphFace< Vertex, Edge, Face >
- GraphFace< Vertex, Edge, Face > : BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >
- GraphMap : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >
- GraphTriangle() : BALL::GraphTriangle< Vertex, Edge, Face >
- GraphTriangle< Vertex, Edge, Face > : BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >
- GraphVertex() : BALL::GraphVertex< Vertex, Edge, Face >
- GraphVertex< Vertex, Edge, Face > : BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >
- GRAVITATIONAL_CONSTANT : BALL::Constant
- greedy_atom_type_penalty_ : BALL::KGreedyBondOrderStrategy
- greedy_bond_length_penalty_ : BALL::KGreedyBondOrderStrategy
- greedy_k_ : BALL::KGreedyBondOrderStrategy
- GREEDY_K_SIZE : BALL::KGreedyBondOrderStrategy::Default, BALL::KGreedyBondOrderStrategy::Option
- greedy_node_expansions_ : BALL::KGreedyBondOrderStrategy
- greedy_set_ : BALL::KGreedyBondOrderStrategy
- greedy_solution : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >
- GreedyFillIn : BALL::TreeWidthImplementation< UndirectedGraph >
- GREEN_CHANNEL : BALL::VIEW::ChannelFormat
- grid_ : BALL::TContourSurface< T >::Cube, BALL::VIEW::ColorByGridProcessor, BALL::VIEW::GridVisualisation, BALL::VIEW::GridVisualizationDialog, BALL::VIEW::ModifyRepresentationDialog, BALL::VIEW::RaytraceableGrid
- grid_dialog_ : BALL::VIEW::RegularData3DController
- grid_list_ : BALL::VIEW::GridVisualizationDialog, BALL::VIEW::ModifyRepresentationDialog
- grid_offset_ : BALL::TContourSurface< T >::Cube
- grid_search_recursions : BALL::QSAR::FeatureSelectionConfiguration, BALL::QSAR::ModelConfiguration
- grid_search_steps : BALL::QSAR::FeatureSelectionConfiguration, BALL::QSAR::ModelConfiguration
- grid_search_stepwidth : BALL::QSAR::FeatureSelectionConfiguration, BALL::QSAR::ModelConfiguration
- grid_sets_ : BALL::GridBasedScoring
- GRID_SIZE : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- GRID_SPACING : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- grid_to_texture_ : BALL::VIEW::GLRenderer
- gridable_ : BALL::ScoringComponent
- GridAnalysis() : BALL::GridAnalysis
- GridBasedScoring() : BALL::GridBasedScoring, BALL::ScoreGridSet
- GridColorWidget() : BALL::VIEW::GridColorWidget
- GridedMM() : BALL::GridedMM
- GridedPLP() : BALL::GridedPLP
- gridSearch() : BALL::QSAR::Kernel
- gridSelected() : BALL::VIEW::GridVisualizationDialog, BALL::VIEW::ModifyRepresentationDialog
- gridSet_scores : BALL::GridBasedScoring::GridSetsResult
- gridsets_result_ : BALL::GridBasedScoring
- GridVisualisation() : BALL::VIEW::GridVisualisation
- GridVisualizationDialog() : BALL::VIEW::GridVisualizationDialog
- Group : BALL::Element
- guest_ : BALL::VIEW::DockWidget
- guide_points_ : BALL::VIEW::AddBackboneModel