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BALL::Peptides::NameConverter Member List

This is the complete list of members for BALL::Peptides::NameConverter, including all inherited members.

conventions_ | BALL::Peptides::NameConverter | protected
conversion_table_ | BALL::Peptides::NameConverter | protected
convertName(const String &amino_acid, const String &old_atom_name, const String &old_naming_scheme, const String &new_naming_scheme) const | BALL::Peptides::NameConverter |
countInstances_(const std::type_info &type) | BALL::Embeddable | protected static
dump(std::ostream &s=std::cout, Size depth=0) const | BALL::Embeddable | virtual
Embeddable(const String &identifier="<Embeddable>") | BALL::Embeddable |
Embeddable(const Embeddable &embeddable) | BALL::Embeddable |
EmbeddableVector typedef | BALL::Embeddable |
getIdentifier() const | BALL::Embeddable |
getInstance_(const std::type_info &type, Position index) | BALL::Embeddable | protected static
getInstance_(const std::type_info &type, const String &identifier) | BALL::Embeddable | protected static
matches(const String &amino_acid, const String &old_atom_name, const String &old_naming_scheme, const String &new_atom_name, const String &new_naming_scheme) const | BALL::Peptides::NameConverter |
NameConverter() | BALL::Peptides::NameConverter |
options | BALL::Peptides::NameConverter |
pseudo_conventions_ | BALL::Peptides::NameConverter | protected
pseudo_conversion_table_ | BALL::Peptides::NameConverter | protected
readConversionTable_() | BALL::Peptides::NameConverter | protected
readPseudoAtomsConversionTable_() | BALL::Peptides::NameConverter | protected
registerInstance_(const std::type_info &type, const Embeddable *instance) | BALL::Embeddable | protected static
registerThis() | BALL::Embeddable | virtual
resolvePseudoAtoms(const String &amino_acid, const String &atom_name, const String &old_naming_scheme, const String &new_naming_scheme) const | BALL::Peptides::NameConverter |
setDefaultOptions() | BALL::Peptides::NameConverter |
setIdentifier(const String &identifier) | BALL::Embeddable |
supportsNamingScheme(const String &scheme_name) const | BALL::Peptides::NameConverter |
supportsPseudoAtomNamingScheme(const String &scheme_name) const | BALL::Peptides::NameConverter |
unregisterInstance_(const Embeddable *instance) | BALL::Embeddable | protected static
unregisterThis() | BALL::Embeddable |
VALUE_NA | BALL::Peptides::NameConverter | static
~Embeddable() | BALL::Embeddable | virtual
~NameConverter() | BALL::Peptides::NameConverter | inline virtual