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Here is a list of all functions with links to the classes they belong to:

### - r -

- RadialDistributionFunction() : BALL::RadialDistributionFunction
- RadiusRuleProcessor() : BALL::RadiusRuleProcessor
- RandomAccessIterator() : BALL::RandomAccessIterator< Container, DataType, Position, Traits >
- RandomCoilShiftProcessor() : BALL::RandomCoilShiftProcessor
- RandomEvaluation() : BALL::RandomEvaluation
- randomGenePosition() : BALL::GenericGene
- randomGeneValue() : BALL::GenericGene
- randomize() : BALL::DoubleGene, BALL::GenericGene, BALL::GeneticIndividual, BALL::QuaternionGene
- RaytraceableContourSurfaceDialog() : BALL::VIEW::RaytraceableContourSurfaceDialog
- RaytraceableGrid() : BALL::VIEW::RaytraceableGrid
- RaytraceableGridController() : BALL::VIEW::RaytraceableGridController
- rbegin() : BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::Gradient, BALL::PDBRecords, BALL::RandomAccessIterator< Container, DataType, Position, Traits >, BALL::String
- rbeginBond() : BALL::Atom
- rbeginChildComposite() : BALL::Composite
- rbeginComposite() : BALL::Composite
- rdbuf() : BALL::LogStream
- RDFIntegrator() : BALL::RDFIntegrator
- RDFParameter() : BALL::RDFParameter
- RDFSection() : BALL::RDFSection
- reactTo() : BALL::VIEW::PyWidget
- reactToMessages_() : BALL::VIEW::MolecularControl
- read() : BALL::AmiraMeshFile, BALL::AntechamberFile, BALL::BitVector, BALL::Bruker1DFile, BALL::Bruker2DFile, BALL::CCP4File, BALL::CIFFile, BALL::DCDFile, BALL::DockResultFile, BALL::DSN6File, BALL::GAFFCESParser, BALL::GAMESSDatFile, BALL::GAMESSLogFile, BALL::GenericMolFile, BALL::HINFile, BALL::HMOFile, BALL::INIFile, BALL::JCAMPFile, BALL::KCFFile, BALL::MOL2File, BALL::MOLFile, BALL::MOPACOutputFile, BALL::NMRStarFile, BALL::Options, BALL::PDBFile, BALL::PreciseTime, BALL::PropertyManager, BALL::SDFile, BALL::Selectable, BALL::TimeStamp, BALL::TrajectoryFile, BALL::TRRFile, BALL::TVector3< T >, BALL::XYZFile
- readACFile() : BALL::VIEW::MolecularFileDialog
- readAdditionalGridSetFromFile() : BALL::GridBasedScoring
- readAndInitBondAnglesFromFile_() : BALL::HybridisationProcessor
- readAtomLine_() : BALL::MOLFile
- readAtomPenalties_() : BALL::AssignBondOrderProcessor
- readAtomSection_() : BALL::MOL2File
- readAtomTypeSmartsFromFile_() : BALL::HybridisationProcessor
- readBinValueasFloat_() : BALL::CCP4File
- readBinValueasInt_() : BALL::CCP4File
- readBondLengthsFromFile_() : BALL::BuildBondsProcessor
- readBondLine_() : BALL::MOLFile
- readBondSection_() : BALL::MOL2File
- readChargeData_() : BALL::HMOFile
- readClassInformationFromFile() : BALL::QSAR::ClassificationModel
- readCommentSection_() : BALL::MOL2File
- readConversionTable_() : BALL::Peptides::NameConverter
- readCountsLine_() : BALL::MOLFile
- readCSVFile() : BALL::QSAR::QSARData
- readCTAB_() : BALL::MOLFile
- readDCDFile() : BALL::ConformationSet
- readDELIMITER_() : BALL::KCFFile
- readDescriptorInformation() : BALL::QSAR::Model
- readDescriptorInformationFromFile() : BALL::QSAR::Model, BALL::QSAR::RegressionModel
- readDockResult() : BALL::DockResult
- readEDGE_() : BALL::KCFFile
- readElementData_() : BALL::HMOFile
- readEmpiricalParameters() : BALL::MMFF94ESParameters, BALL::MMFF94StretchBendParameters, BALL::MMFF94StretchParameters
- readENTRY_() : BALL::KCFFile
- readFeatureSelectionConfiguration() : BALL::QSAR::ConfigIO
- readFiles() : BALL::VIEW::MolecularFileDialog
- readFirstRecord() : BALL::PDBFile
- readFloat_() : BALL::DCDFile
- readFromFile() : BALL::QSAR::ALLModel, BALL::QSAR::ClassificationValidation, BALL::QSAR::KernelModel, BALL::QSAR::LDAModel, BALL::QSAR::LogitModel, BALL::QSAR::Model, BALL::QSAR::NBModel, BALL::QSAR::QSARData, BALL::QSAR::RegressionModel, BALL::QSAR::RegressionValidation, BALL::QSAR::SNBModel, BALL::QSAR::Validation, BALL::ScoreGridSet, BALL::SnapShotManager
- readFromString() : BALL::VIEW::Camera
- readHeader() : BALL::AmiraMeshFile, BALL::CCP4File, BALL::DCDFile, BALL::DSN6File, BALL::TrajectoryFile, BALL::TRRFile
- readHeaderValue_() : BALL::DSN6File
- readHINFile() : BALL::VIEW::MolecularFileDialog
- readInputConfiguration() : BALL::QSAR::ConfigIO
- readInputPartitioningConfiguration() : BALL::QSAR::ConfigIO
- readInvalidRecord() : BALL::PDBFile
- readKernelParametersFromFile() : BALL::QSAR::KernelModel
- readLabels() : BALL::QSAR::ClassificationModel
- readLigand() : BALL::DockResultFile
- readLights_() : BALL::VIEW::Scene
- readLine() : BALL::LineBasedFile, BALL::PDBFile
- readMatrix() : BALL::QSAR::Model, BALL::QSAR::QSARData
- readModelConfiguration() : BALL::QSAR::ConfigIO
- readModelParametersFromFile() : BALL::QSAR::Model
- readMOL2File() : BALL::VIEW::MolecularFileDialog
- readMoleculeSection_() : BALL::MOL2File
- readMOLFile() : BALL::VIEW::MolecularFileDialog
- readMSMSFile() : BALL::TSurface< T >
- readNextHeader() : BALL::TRRFile
- readNextRecord() : BALL::PDBFile
- readNODE_() : BALL::KCFFile
- readNodeData_() : BALL::HMOFile
- readObject() : BALL::PersistenceManager
- readObjectArray() : BALL::PersistenceManager
- readObjectPointer() : BALL::PersistenceManager
- readObjectPointerArray() : BALL::PersistenceManager
- readObjectReference() : BALL::PersistenceManager
- readObjectSmartPointer() : BALL::PersistenceManager
- readOptionFile() : BALL::DockingAlgorithm, BALL::Options
- readOptions() : BALL::AStarBondOrderStrategy, BALL::BondOrderAssignmentStrategy, BALL::BranchAndBoundBondOrderStrategy, BALL::FPTBondOrderStrategy, BALL::ILPBondOrderStrategy, BALL::KGreedyBondOrderStrategy
- readOptions_() : BALL::AssignBondOrderProcessor, BALL::SideChainPlacementProcessor
- readParameters() : BALL::MMFF94ParametersBase
- readPDBFile() : BALL::VIEW::MolecularFileDialog
- readPredictionConfiguration() : BALL::QSAR::ConfigIO
- readPreferenceEntries() : BALL::VIEW::ColoringSettingsDialog, BALL::VIEW::MainControlPreferences, BALL::VIEW::PluginDialog, BALL::VIEW::PreferencesEntry, BALL::VIEW::PythonSettings
- readPrimitive() : BALL::PersistenceManager
- readPropertyBlock_() : BALL::SDFile
- readPropertyNames() : BALL::QSAR::QSARData
- readPseudoAtomsConversionTable_() : BALL::Peptides::NameConverter
- readReceptor() : BALL::DockResultFile
- readRecords() : BALL::PDBFile
- readResponseTransformationFromFile() : BALL::QSAR::Model
- readResults() : BALL::DockResultFile
- readScalingFactors() : BALL::GeneralizedBornModel
- readSCWRLBackboneDependentLibraryFile() : BALL::SCWRLRotamerFile
- readSCWRLBackboneIndependentLibraryFile() : BALL::SCWRLRotamerFile
- readSDFile() : BALL::QSAR::QSARData, BALL::VIEW::MolecularFileDialog
- readSection() : BALL::ParamFile
- readSetSection_() : BALL::MOL2File
- readShortcutsFromFile() : BALL::VIEW::ShortcutRegistry
- readSize_() : BALL::DCDFile
- readStorableObject() : BALL::PersistenceManager
- readSubstructureSection_() : BALL::MOL2File
- readSymmetryRecords() : BALL::CCP4File
- readTrainingData() : BALL::QSAR::Model
- readTrainingResult() : BALL::QSAR::KernelModel
- readTransformationsFromFile_() : BALL::PoseClustering
- readUnknownRecord() : BALL::PDBFile
- readUntil_() : BALL::HMOFile
- readValidationConfiguration() : BALL::QSAR::ConfigIO
- readVector() : BALL::QSAR::Model
- readVector_() : BALL::DCDFile
- readXYZFile() : BALL::VIEW::MolecularFileDialog
- rebuildAllRepresentations() : BALL::VIEW::RepresentationManager
- recalibrate() : BALL::Rescoring
- receivedData() : BALL::SimpleDownloaderHelper::DLHelper
- receiveOptions() : BALL::MPISupport
- receivePersistenceStream_() : BALL::MPISupport
- receivesBufferUpdates() : BALL::VIEW::RenderSetup
- receiveSystem() : BALL::MPISupport
- Receptor() : BALL::Receptor
- recieve() : BALL::RingPerceptionProcessor::TNode_
- Reciprocal() : BALL::Reciprocal< Function, DataType >
- reconstructFragment() : BALL::ReconstructFragmentProcessor
- ReconstructFragmentProcessor() : BALL::ReconstructFragmentProcessor
- RecordHELIX() : BALL::PDB::RecordHELIX
- RecordMASTER() : BALL::PDB::RecordMASTER
- RecordSEQRES() : BALL::PDB::RecordSEQRES
- RecordSHEET() : BALL::PDB::RecordSHEET
- RecordSSBOND() : BALL::PDB::RecordSSBOND
- RecordTURN() : BALL::PDB::RecordTURN
- RecStruct_() : BALL::SmartsMatcher::RecStruct_
- RecStructCore_() : BALL::SmartsMatcher::RecStructCore_
- RecStructPool_() : BALL::SmartsMatcher::RecStructPool_
- recurseGeneration_() : BALL::VIEW::MolecularControl
- redock_() : BALL::VIEW::DockResultDialog
- redraw() : BALL::DockProblem, BALL::EvolutionaryDocking
- redrawAllRepresentations() : BALL::VIEW::MainControl
- ReducedSurface() : BALL::ReducedSurface
- reduceSelection_() : BALL::VIEW::MainControl
- reestimateBondOrdersRings_() : BALL::BuildBondsProcessor
- ReferenceArea() : BALL::ReferenceArea
- refine() : BALL::TriangulatedSphere
- refineClustering() : BALL::PoseClustering
- refineGuidePoints_() : BALL::VIEW::AddBackboneModel, BALL::VIEW::AddCartoonModel
- refineModelParts_() : BALL::VIEW::AddBackboneModel
- reflectivenessFactorChanged() : BALL::VIEW::MaterialSettings
- refresh() : BALL::VIEW::GLOffscreenTarget, BALL::VIEW::GLRenderWindow, BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- registerAdvancedParameters() : BALL::CommandlineParser
- registerAt() : BALL::LogStreamNotifier
- registerChildEntry() : BALL::VIEW::PluginDialog
- registerClass() : BALL::PersistenceManager
- registerConnectionObject() : BALL::VIEW::ConnectionObject
- registerController() : BALL::VIEW::DatasetControl
- registerFlag() : BALL::CommandlineParser
- registerForHelpSystem() : BALL::VIEW::HelpViewer, BALL::VIEW::ModularWidget
- registerHandler() : BALL::PluginManager
- RegisterHelpSystemMessage() : BALL::VIEW::RegisterHelpSystemMessage
- registerInstance_() : BALL::Embeddable
- registerKernelClasses_() : BALL::PersistenceManager
- registerMandatoryDoubleListParameter() : BALL::CommandlineParser
- registerMandatoryDoubleParameter() : BALL::CommandlineParser
- registerMandatoryGalaxyOutputFolder() : BALL::CommandlineParser
- registerMandatoryGalaxyOutputId() : BALL::CommandlineParser
- registerMandatoryInputFile() : BALL::CommandlineParser
- registerMandatoryInputFileList() : BALL::CommandlineParser
- registerMandatoryIntegerListParameter() : BALL::CommandlineParser
- registerMandatoryIntegerParameter() : BALL::CommandlineParser
- registerMandatoryOutputFile() : BALL::CommandlineParser
- registerMandatoryOutputFileList() : BALL::CommandlineParser
- registerMandatoryStringListParameter() : BALL::CommandlineParser
- registerMandatoryStringParameter() : BALL::CommandlineParser
- registerModule() : BALL::ShiftModel
- registerObject_() : BALL::VIEW::PreferencesEntry
- registerObjectCreator() : BALL::VIEW::ServerWidget
- registerOptionalDoubleListParameter() : BALL::CommandlineParser
- registerOptionalDoubleParameter() : BALL::CommandlineParser
- registerOptionalGalaxyOutputFolder() : BALL::CommandlineParser
- registerOptionalGalaxyOutputId() : BALL::CommandlineParser
- registerOptionalInputFile() : BALL::CommandlineParser
- registerOptionalInputFileList() : BALL::CommandlineParser
- registerOptionalIntegerListParameter() : BALL::CommandlineParser
- registerOptionalIntegerParameter() : BALL::CommandlineParser
- registerOptionalOutputFile() : BALL::CommandlineParser
- registerOptionalOutputFileList() : BALL::CommandlineParser
- registerOptionalStringListParameter() : BALL::CommandlineParser
- registerOptionalStringParameter() : BALL::CommandlineParser
- registerParameter() : BALL::GeneticAlgorithm
- registerPredicate() : BALL::Expression
- registerRenderers_() : BALL::VIEW::Scene
- registerShortcut() : BALL::VIEW::ShortcutRegistry
- registerStandardModules_() : BALL::ShiftModel
- registerStandardPredicates_() : BALL::Expression
- registerThis() : BALL::Embeddable
- registerTransformation() : BALL::File, BALL::TransformationManager
- registerTypes_() : BALL::MPISupport
- registerWidget() : BALL::VIEW::ModularWidget
- registerWidgetForHelpSystem_() : BALL::VIEW::PreferencesEntry
- registerWidgets_() : BALL::VIEW::PreferencesEntry
- Registry() : BALL::QSAR::Registry
- RegistryEntry() : BALL::QSAR::RegistryEntry
- RegressionModel() : BALL::QSAR::RegressionModel
- RegressionValidation() : BALL::QSAR::RegressionValidation
- RegularData3DController() : BALL::VIEW::RegularData3DController
- RegularExpression() : BALL::RegularExpression
- rehash() : BALL::HashSet< Key >
- ReissCavFreeEnergyProcessor() : BALL::ReissCavFreeEnergyProcessor
- reject() : BALL::VIEW::AmberConfigurationDialog, BALL::VIEW::AssignBondOrderConfigurationDialog, BALL::VIEW::CharmmConfigurationDialog, BALL::VIEW::EditSingleShortcut, BALL::VIEW::GeometricFitDialog, BALL::VIEW::MMFF94ConfigurationDialog, BALL::VIEW::Preferences, BALL::VIEW::RaytraceableContourSurfaceDialog
- RelatedDB() : BALL::NMRStarFile::MolecularSystem::RelatedDB
- releaseBuffer() : BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- RelHydrophobicVdWSurface() : BALL::RelHydrophobicVdWSurface
- RelNegativePartialCharge() : BALL::RelNegativePartialCharge
- RelNegativePolarVdWSurface() : BALL::RelNegativePolarVdWSurface
- RelNegativeVdWSurface() : BALL::RelNegativeVdWSurface
- RelNumberOfRotatableBonds() : BALL::RelNumberOfRotatableBonds
- RelNumberOfRotatableSingleBonds() : BALL::RelNumberOfRotatableSingleBonds
- RelPolarVdWSurface() : BALL::RelPolarVdWSurface
- RelPositivePartialCharge() : BALL::RelPositivePartialCharge
- RelPositivePolarVdWSurface() : BALL::RelPositivePolarVdWSurface
- RelPositiveVdWSurface() : BALL::RelPositiveVdWSurface
- remember() : BALL::FPTBondOrderStrategy::DPBackTracking_
- remove() : BALL::AtomContainer, BALL::Chain, BALL::Directory, BALL::File, BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >, BALL::List< Value >, BALL::LogStream, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Protein, BALL::Residue, BALL::RSFace, BALL::SecondaryStructure, BALL::StringHashMap< Value >, BALL::System, BALL::Triangle, BALL::TriangulatedSurface, BALL::VIEW::CompositeManager, BALL::VIEW::MainControl, BALL::VIEW::RepresentationManager
- remove_() : BALL::VIEW::MainControl
- removeAll() : BALL::HashGridBox3< Item >
- removeChild() : BALL::Composite, BALL::ConnectedToPredicate::CTPNode, BALL::ResourceEntry
- removeClippingPlane() : BALL::VIEW::RepresentationManager
- removeComponent() : BALL::ComposedEnergyProcessor, BALL::ForceField, BALL::ScoringFunction
- removeComposite() : BALL::VIEW::MolecularControl
- removedComposite() : BALL::VIEW::RepresentationManager
- removeDirectory() : BALL::VIEW::PluginDirectoryModel
- removeEmptyDescriptors() : BALL::QSAR::FeatureSelection
- removeEntry() : BALL::VIEW::Preferences
- removeFile_() : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- removeGrid_() : BALL::VIEW::ModifyRepresentationDialog
- removeGridTextures() : BALL::VIEW::RenderSetup
- removeHavingProperty() : BALL::AtomContainer
- removeHighlyCorrelatedCompounds() : BALL::QSAR::QSARData
- removeHighlyCorrelatedFeatures() : BALL::QSAR::FeatureSelection
- removeHotkey() : BALL::VIEW::PyWidget
- removeInvalidDescriptors() : BALL::QSAR::QSARData
- removeInvalidSubstances() : BALL::QSAR::QSARData
- removeItem_() : BALL::VIEW::GenericControl, BALL::VIEW::Preferences
- removeKey() : BALL::ResourceEntry, BALL::ResourceFile
- removeLightPressed() : BALL::VIEW::LightSettings
- removeLightSource() : BALL::VIEW::Stage
- removeLowResponseCorrelation() : BALL::QSAR::FeatureSelection
- removeMenuEntry() : BALL::VIEW::MainControl
- removeModularWidget() : BALL::VIEW::MainControl
- removeMoleculeOwnership() : BALL::FlexibleMolecule
- removeNotHavingProperty() : BALL::AtomContainer
- removePluginDirectory() : BALL::PluginManager, BALL::VIEW::PluginDialog
- removeRecursive_() : BALL::VIEW::MolecularControl
- removeRepresentation() : BALL::VIEW::GeometricControl, BALL::VIEW::GLRenderer, BALL::VIEW::Renderer, BALL::VIEW::RenderSetup, BALL::VIEW::RTfactRenderer, BALL::VIEW::TilingRenderer
- removeSelected() : BALL::Composite
- removeSelection() : BALL::VIEW::HotkeyTable
- removeSolvent() : BALL::PeriodicBoundary
- removeTextureFor_() : BALL::VIEW::GLRenderer
- removeUnselected() : BALL::Composite
- rename() : BALL::Directory, BALL::File, BALL::VIEW::SnapshotManagerInterface
- renameRepresentation() : BALL::VIEW::GeometricControl
- renameTo() : BALL::Directory, BALL::File
- rend() : BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::Gradient, BALL::PDBRecords, BALL::RandomAccessIterator< Container, DataType, Position, Traits >, BALL::String
- rendBond() : BALL::Atom
- rendChildComposite() : BALL::Composite
- rendComposite() : BALL::Composite
- render() : BALL::VIEW::GLRenderer
- render_() : BALL::VIEW::Renderer, BALL::VIEW::TilingRenderer
- renderBox_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderClippingPlane_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderDashedBond_() : BALL::VIEW::AddBallAndStickModel
- renderDisc_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::XML3DRenderer
- Renderer() : BALL::VIEW::Renderer
- renderGrid_() : BALL::VIEW::Scene
- renderGridVisualisation_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderLabel_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::XML3DRenderer
- renderLine_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderMesh_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderMultiLine_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::XML3DRenderer
- renderMultipleBond_() : BALL::VIEW::AddBallAndStickModel
- renderNucleotideOutline_() : BALL::VIEW::AddCartoonModel
- renderOneRepresentation() : BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::TilingRenderer, BALL::VIEW::XML3DRenderer
- renderPoint_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::XML3DRenderer
- renderQuadMesh_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderRepresentation_() : BALL::VIEW::GLRenderer
- renderRepresentations_() : BALL::VIEW::GLRenderer
- renderRuler() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer, BALL::VIEW::TilingRenderer
- renderSD_() : BALL::VIEW::SDWidget
- RenderSetup() : BALL::VIEW::RenderSetup
- renderSimpleBox_() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer
- renderSphere_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderStandardBond_() : BALL::VIEW::AddBallAndStickModel
- renderText() : BALL::VIEW::GLRenderWindow
- renderText_() : BALL::VIEW::Scene
- renderToBuffer() : BALL::VIEW::BufferedRenderer, BALL::VIEW::GLRenderer, BALL::VIEW::RenderSetup, BALL::VIEW::TilingRenderer
- renderToBuffer_() : BALL::VIEW::RenderSetup
- RenderToBufferFinishedEvent() : BALL::VIEW::RenderToBufferFinishedEvent
- renderToBufferImpl() : BALL::VIEW::BufferedRenderer, BALL::VIEW::CudaVolumeRenderer, BALL::VIEW::RTfactRenderer
- renderTube_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderTwoColoredLine_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- renderTwoColoredTube_() : BALL::VIEW::GLRenderer, BALL::VIEW::POVRenderer, BALL::VIEW::Renderer, BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer, BALL::VIEW::XML3DRenderer
- reopen() : BALL::File
- replace() : BALL::Composite, BALL::String
- replaceGridSetFromFile() : BALL::GridBasedScoring
- Representation() : BALL::VIEW::Representation
- RepresentationManager() : BALL::VIEW::RepresentationManager
- RepresentationMessage() : BALL::VIEW::RepresentationMessage
- requestModeChange() : BALL::VIEW::InteractionMode
- rescale() : BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >
- rescore() : BALL::Rescoring
- Rescoring() : BALL::Rescoring
- Rescoring1D() : BALL::Rescoring1D
- Rescoring3D() : BALL::Rescoring3D
- Rescoring4D() : BALL::Rescoring4D
- reserve() : BALL::String
- reset() : BALL::DockingAlgorithm, BALL::Path, BALL::Timer, BALL::VIEW::DockDialog, BALL::VIEW::EditSingleShortcut, BALL::VIEW::GeometricFitDialog, BALL::VIEW::PropEditorWidget, BALL::VIEW::PropertyEditor
- reset_() : BALL::VIEW::BoolEditorWidget, BALL::VIEW::DoubleEditorWidget, BALL::VIEW::FloatEditorWidget, BALL::VIEW::IntEditorWidget, BALL::VIEW::PDBInfoEditorWidget, BALL::VIEW::PropDeleteWidget, BALL::VIEW::PropEditorWidget, BALL::VIEW::StringEditorWidget, BALL::VIEW::UIntEditorWidget
- resetBondOrders() : BALL::AssignBondOrderProcessor
- resetCamera_() : BALL::VIEW::Scene
- resetCounter() : BALL::TContour< T >, BALL::TContourLine< T >
- resetFlexibleResidues() : BALL::ScoringFunction
- resetHTMLView() : BALL::VIEW::HTMLViewDock
- resetLanguageChanged() : BALL::VIEW::MainControlPreferences
- resetOptions() : BALL::VIEW::AmberConfigurationDialog, BALL::VIEW::AssignBondOrderConfigurationDialog, BALL::VIEW::CharmmConfigurationDialog, BALL::VIEW::MMFF94ConfigurationDialog
- resetPositions() : BALL::AtomVector
- resetPredicate() : BALL::AtomContainerIteratorTraits, BALL::AtomIteratorTraits, BALL::ChainIteratorTraits, BALL::FragmentIteratorTraits, BALL::MoleculeIteratorTraits, BALL::NucleicAcidIteratorTraits, BALL::NucleotideIteratorTraits, BALL::PDBAtomIteratorTraits, BALL::ProteinIteratorTraits, BALL::ResidueIteratorTraits, BALL::SecondaryStructureIteratorTraits
- resetPressed() : BALL::VIEW::DockDialog, BALL::VIEW::FDPBDialog
- resetRepresentationsForRenderer_() : BALL::VIEW::Scene
- resetResiduePositions() : BALL::ScoringFunction
- resetScoring() : BALL::ConformationSet
- resetTo_pressed() : BALL::VIEW::UndoManagerDialog
- resetTracking() : BALL::VIEW::Scene
- Residue() : BALL::PDB::Residue, BALL::Residue
- ResidueChecker() : BALL::ResidueChecker
- ResidueIteratorTraits() : BALL::ResidueIteratorTraits
- ResidueNameColorProcessor() : BALL::VIEW::ResidueNameColorProcessor
- ResidueNumberColorProcessor() : BALL::VIEW::ResidueNumberColorProcessor
- ResidueRotamerSet() : BALL::ResidueRotamerSet
- residuesAreConnected_() : BALL::VIEW::AddBackboneModel
- ResidueTorsions() : BALL::ResidueTorsions
- ResidueTypeColorProcessor() : BALL::VIEW::ResidueTypeColorProcessor
- resize() : BALL::AtomVector, BALL::PDBRecords, BALL::String, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::FrameBufferFormat, BALL::VIEW::GLOffscreenTarget, BALL::VIEW::GLRenderWindow, BALL::VIEW::MainControl, BALL::VIEW::RenderSetup, BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- resized() : BALL::VIEW::FrameBufferFormat
- resizeEvent() : BALL::VIEW::Scene, BALL::VIEW::TextEditorWidget
- resizeGrid() : BALL::VIEW::RegularData3DController
- resizeNormals() : BALL::TSurface< T >
- resizeTriangles() : BALL::TSurface< T >
- resizeVertices() : BALL::TSurface< T >
- Resolution() : BALL::VIEW::Resolution
- resolvePseudoAtoms() : BALL::Peptides::NameConverter
- ResourceEntry() : BALL::ResourceEntry
- ResourceFile() : BALL::ResourceFile
- restore() : BALL::DockProblem
- restoreDefaultValues() : BALL::VIEW::LightSettings, BALL::VIEW::OpenSavePreferences, BALL::VIEW::PluginDialog, BALL::VIEW::PreferencesEntry
- restoreItem_() : BALL::VIEW::AtomOverview
- restoreRepresentations() : BALL::VIEW::RepresentationManager
- restoreValues() : BALL::VIEW::LightSettings, BALL::VIEW::OpenSavePreferences, BALL::VIEW::PreferencesEntry
- restoreValues_() : BALL::VIEW::PreferencesEntry
- restoreViewPoint() : BALL::VIEW::Scene
- restoreWindows() : BALL::VIEW::MainControl
- Result() : BALL::Result
- ResultData() : BALL::Result::ResultData
- retrieveHistoryLine_() : BALL::VIEW::PyWidget
- retrieveSymOps_() : BALL::CrystalInfo
- returnPressed() : BALL::VIEW::PyWidget
- reverse() : BALL::String
- revert() : BALL::GraphEdge< Vertex, Edge, Face >
- rewind() : BALL::LineBasedFile
- rfind() : BALL::String
- RGroupAssembler() : BALL::RGroupAssembler
- ribbonModeEnabled() : BALL::VIEW::AddBackboneModel
- ribbonsEnabled() : BALL::VIEW::AddCartoonModel
- right() : BALL::String
- Rigid() : BALL::FlexDefinition
- RigidTransformation() : BALL::PoseClustering::RigidTransformation
- Ring() : BALL::RingAnalyser::Ring
- RingAnalyser() : BALL::RingAnalyser
- RingFinder() : BALL::RingFinder
- ringIsClockwise_() : BALL::SDGenerator
- RingPerceptionProcessor() : BALL::RingPerceptionProcessor
- RingProcessorException() : BALL::Exception::RingProcessorException
- RombergIntegrator() : BALL::RombergIntegrator< Function, DataType >
- Rotamer() : BALL::Rotamer
- RotamerLibrary() : BALL::RotamerLibrary
- rotate() : BALL::RotateBond, BALL::RotateBonds, BALL::TMatrix4x4< T >, BALL::VIEW::Camera, BALL::VIEW::Scene
- rotateAboutView() : BALL::VIEW::Camera
- RotateBond() : BALL::RotateBond
- RotateBonds() : BALL::RotateBonds
- rotateClockwise() : BALL::VIEW::Scene
- rotateComposites() : BALL::VIEW::Scene
- rotateLigandFragment() : BALL::IMGDock
- RotateMode() : BALL::VIEW::RotateMode
- rotateProbeGroup_() : BALL::GridAnalysis
- rotateSystem_() : BALL::VIEW::RotateMode
- rotateSystemClockwise_() : BALL::VIEW::RotateMode, BALL::VIEW::Scene
- rotateVector3Angle_() : BALL::VIEW::GLRenderer
- rotateX() : BALL::TMatrix4x4< T >
- rotateY() : BALL::TMatrix4x4< T >
- rotateZ() : BALL::TMatrix4x4< T >
- RotationalEntropy() : BALL::RotationalEntropy
- RotationAngles_() : BALL::GeometricFit::RotationAngles_
- rowCount() : BALL::VIEW::PluginDirectoryModel, BALL::VIEW::PluginModel, BALL::VIEW::ShortcutTableModel
- rowSelected() : BALL::VIEW::PythonSettings
- RRModel() : BALL::QSAR::RRModel
- RSComputer() : BALL::RSComputer
- RSEdge() : BALL::RSEdge
- RSFace() : BALL::RSFace
- RSVertex() : BALL::RSVertex
- RTfactRenderer() : BALL::VIEW::RTfactRenderer
- RuleEvaluator() : BALL::RuleEvaluator
- RuleProcessor() : BALL::RuleProcessor
- run() : BALL::PyCAPIKernel, BALL::PyInterpreter, BALL::PyKernel, BALL::RSComputer, BALL::SASTriangulator, BALL::SESComputer, BALL::SESSingularityCleaner, BALL::SESTriangulator, BALL::SimpleDownloaderHelper::HelperThread, BALL::TCPServerThread, BALL::VIEW::AnimationThread, BALL::VIEW::BALLThread, BALL::VIEW::CalculateFDPBThread, BALL::VIEW::DockingThread, BALL::VIEW::EnergyMinimizerThread, BALL::VIEW::GenerateCrystalThread, BALL::VIEW::MDSimulationThread, BALL::VIEW::RenderSetup, BALL::VIEW::RunPythonThread, BALL::VIEW::ServerWidget::BALLViewServer, BALL::VIEW::UpdateRepresentationThread
- runBondOrderAssignment() : BALL::VIEW::MolecularStructure
- runCommand_() : BALL::VIEW::PyWidget
- runCurrentScript() : BALL::VIEW::PyWidget
- runDocking() : BALL::VIEW::DockingController
- runFile() : BALL::PyCAPIKernel, BALL::PyInterpreter, BALL::PyKernel
- runMinimization() : BALL::VIEW::MolecularStructure
- runningOnVirtualBox() : BALL::VIEW::GLRenderer
- RunPythonThread() : BALL::VIEW::RunPythonThread
- runRescoring() : BALL::Rescorer
- runScoring_() : BALL::VIEW::DockingController
- runString() : BALL::VIEW::PyWidget
- runTest() : BALL::VIEW::TestFramework