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Here is a list of all class members with links to the classes they belong to:

### - p -

- P : BALL::Element, BALL::Rotamer
- p : BALL::TCircle3< T >, BALL::TLine3< T >, BALL::TPlane3< T >, BALL::TriangulatedSphere::Face, BALL::TSphere3< T >, boost::hash< RTpieCpp::InstanceHandle >::conv, boost::hash< RTpieCpp::MeshHandle >::conv
- P15 : BALL::HMOFile
- P6 : BALL::HMOFile
- p_i_ : BALL::ConjugateGradientMinimizer
- p_t_ : BALL::ConjugateGradientMinimizer
- Pa : BALL::Element
- paintEngine() : BALL::VIEW::GLOffscreenTarget
- paintEvent() : BALL::VIEW::ColorButton, BALL::VIEW::GLRenderWindow, BALL::VIEW::Scene, BALL::VIEW::SDWidget, BALL::VIEW::TextEditorWidget::LineNumbers
- paintGL() : BALL::VIEW::Scene
- Pair6_12InteractionEnergyProcessor() : BALL::Pair6_12InteractionEnergyProcessor
- Pair6_12RDFIntegrator() : BALL::Pair6_12RDFIntegrator
- pair_items : BALL::CIFFile::SaveFrame
- PairExpInteractionEnergyProcessor() : BALL::PairExpInteractionEnergyProcessor
- PairExpRDFIntegrator() : BALL::PairExpRDFIntegrator
- PairVector : BALL::AtomBijection, BALL::ForceField, BALL::UCK
- pairwise_scores_ : BALL::PoseClustering
- PALLADIUM : BALL::Element
- par1 : BALL::QSAR::Kernel
- par2 : BALL::QSAR::Kernel
- parameter_filename_ : BALL::DockingAlgorithm
- parameterDefaults : BALL::QSAR::RegistryEntry
- ParameterDescription() : BALL::ParamFile::ParameterDescription
- parameterNames : BALL::QSAR::RegistryEntry
- Parameters() : BALL::Parameters
- parameters_ : BALL::ClaverieParameter, BALL::ForceField, BALL::GeneticAlgorithm, BALL::MMFF94BendParameters, BALL::MMFF94ESParameters, BALL::MMFF94PlaneParameters, BALL::MMFF94StretchBendParameters, BALL::MMFF94StretchParameters, BALL::MMFF94Torsion, BALL::MMFF94TorsionParameters, BALL::MMFF94VDWParameters, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::ShiftModel, BALL::ShiftModule
- parameters_by_row_ : BALL::MMFF94StretchBendParameters
- parameters_initialized_ : BALL::AmberFF, BALL::CharmmFF, BALL::MMFF94
- ParameterSection() : BALL::ParameterSection
- ParameterType : BALL::ParamFile
- ParamFile() : BALL::ParamFile
- parent : BALL::GAFFCESParser::CESPredicate, BALL::HashGridBox3< Item >
- parent_ : BALL::ConformationSet, BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_, BALL::NMRStarFile::NMRAtomDataSet, BALL::SimpleDownloaderHelper::HelperThread, BALL::VIEW::AtomOverview
- PARENT_DIRECTORY : BALL::FileSystem
- parent_widget_ : BALL::VIEW::ServerWidget::BALLViewServer
- parity : BALL::MOLFile::AtomStruct
- pars_ : BALL::Bruker1DFile
- parse() : BALL::CommandlineParser, BALL::ExpressionParser, BALL::GAFFCESParser, BALL::SmartsParser, BALL::SmilesParser
- PARSE_INI_FILE : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- PARSE_PARTIAL_CHARGES : BALL::PDBFile::Default, BALL::PDBFile::Option
- parse_partial_charges_ : BALL::PDBFile
- parseAtomtypeTableFile_() : BALL::GAFFTypeProcessor
- parseBinaryFingerprint() : BALL::BinaryFingerprintMethods
- parseColumnFormat() : BALL::LineBasedFile
- ParsedFunction() : BALL::ParsedFunction< arg >
- ParsedFunctionDialog() : BALL::VIEW::ParsedFunctionDialog
- ParseError() : BALL::Exception::ParseError
- parseLine() : BALL::PDBFile
- parseLine_() : BALL::VIEW::PyWidget
- parseNestedParameterName() : BALL::ParamFile
- parser_ : BALL::GAFFCESParser::CESPredicate
- parseRecordANISOU() : BALL::PDBFile
- parseRecordATOM() : BALL::PDBFile
- parseRecordAUTHOR() : BALL::PDBFile
- parseRecordCAVEAT() : BALL::PDBFile
- parseRecordCISPEP() : BALL::PDBFile
- parseRecordCOMPND() : BALL::PDBFile
- parseRecordCONECT() : BALL::PDBFile
- parseRecordCRYST1() : BALL::PDBFile
- parseRecordDBREF() : BALL::PDBFile
- parseRecordEND() : BALL::PDBFile
- parseRecordENDMDL() : BALL::PDBFile
- parseRecordEXPDTA() : BALL::PDBFile
- parseRecordFORMUL() : BALL::PDBFile
- parseRecordFTNOTE() : BALL::PDBFile
- parseRecordHEADER() : BALL::PDBFile
- parseRecordHELIX() : BALL::PDBFile
- parseRecordHET() : BALL::PDBFile
- parseRecordHETATM() : BALL::PDBFile
- parseRecordHETNAM() : BALL::PDBFile
- parseRecordHETSYN() : BALL::PDBFile
- parseRecordHYDBND() : BALL::PDBFile
- parseRecordJRNL() : BALL::PDBFile
- parseRecordKEYWDS() : BALL::PDBFile
- parseRecordLINK() : BALL::PDBFile
- parseRecordMASTER() : BALL::PDBFile
- parseRecordMODEL() : BALL::PDBFile
- parseRecordMODRES() : BALL::PDBFile
- parseRecordMTRIX1() : BALL::PDBFile
- parseRecordMTRIX2() : BALL::PDBFile
- parseRecordMTRIX3() : BALL::PDBFile
- parseRecordOBSLTE() : BALL::PDBFile
- parseRecordORIGX1() : BALL::PDBFile
- parseRecordORIGX2() : BALL::PDBFile
- parseRecordORIGX3() : BALL::PDBFile
- parseRecordREMARK() : BALL::PDBFile
- parseRecordREVDAT() : BALL::PDBFile
- parseRecordSCALE1() : BALL::PDBFile
- parseRecordSCALE2() : BALL::PDBFile
- parseRecordSCALE3() : BALL::PDBFile
- parseRecordSEQADV() : BALL::PDBFile
- parseRecordSEQRES() : BALL::PDBFile
- parseRecordSHEET() : BALL::PDBFile
- parseRecordSIGATM() : BALL::PDBFile
- parseRecordSIGUIJ() : BALL::PDBFile
- parseRecordSITE() : BALL::PDBFile
- parseRecordSLTBRG() : BALL::PDBFile
- parseRecordSOURCE() : BALL::PDBFile
- parseRecordSPRSDE() : BALL::PDBFile
- parseRecordSSBOND() : BALL::PDBFile
- parseRecordTER() : BALL::PDBFile
- parseRecordTITLE() : BALL::PDBFile
- parseRecordTURN() : BALL::PDBFile
- parseRecordTVECT() : BALL::PDBFile
- parsf1_ : BALL::Bruker2DFile
- parsf2_ : BALL::Bruker2DFile
- partial_charge : BALL::PDB::RecordATOM
- PartialBondOrderAssignment : BALL::AssignBondOrderProcessor, BALL::PartialBondOrderAssignment
- PartialChargeBase() : BALL::PartialChargeBase
- PartialChargeProcessor() : BALL::PartialChargeProcessor
- partitionInputData() : BALL::QSAR::QSARData
- partner1Chosen() : BALL::VIEW::DockDialog
- partner2Chosen() : BALL::VIEW::DockDialog
- partner_atom : BALL::PDB::RecordSLTBRG
- partner_residue : BALL::PDB::RecordSSBOND
- partner_type_to_htype_ : BALL::MMFF94AtomTyper
- past_the_end_ : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
- paste() : BALL::VIEW::MolecularControl, BALL::VIEW::PyWidget
- paste_action_ : BALL::VIEW::MolecularControl
- paste_id_ : BALL::VIEW::MolecularControl
- pasteAllowedFor_() : BALL::VIEW::MolecularControl
- PATCHLVL : BALL::VersionInfo
- Path() : BALL::Path
- path() : BALL::FileSystem
- path_ : BALL::Path, BALL::SimpleDownloaderHelper::HelperThread
- path_array_ : BALL::Path
- path_array_valid_ : BALL::Path
- PATH_SEPARATOR : BALL::FileSystem
- PathStrings : BALL::PyInterpreter
- pause() : BALL::DockingAlgorithm
- pause_ : BALL::DockingAlgorithm
- pauseClicked() : BALL::VIEW::DockProgressDialog
- pauseRendering() : BALL::VIEW::RenderSetup
- PB() : BALL::PB
- Pb : BALL::Element
- pb_solver_ : BALL::PB
- pbcis_ : BALL::MMFF94ESParameters
- PBScoring() : BALL::PBScoring
- pbuf_ : BALL::LogStreamBuf
- PCMCavFreeEnergyProcessor() : BALL::PCMCavFreeEnergyProcessor
- pcount : BALL::TriangulatedSphere::Face
- PCRModel : BALL::QSAR::Model, BALL::QSAR::PCRModel
- Pd : BALL::Element
- PDB_atom_map_ : BALL::PDBFile
- PDB_FILE : BALL::VIEW::MolecularFileDialog
- pdb_id : BALL::PDB::AdditionalAtomInfo
- PDBAtom() : BALL::PDBAtom
- PDBAtomIteratorTraits() : BALL::PDBAtomIteratorTraits
- PDBAtomMap : BALL::PDBFile
- pdbDownloadChecked() : BALL::VIEW::DownloadElectronDensity
- PDBFile() : BALL::PDBFile
- PDBInfo() : BALL::PDBInfo
- PDBInfoEditorWidget() : BALL::VIEW::PDBInfoEditorWidget
- PDBRecords() : BALL::PDBRecords
- Peak() : BALL::Peak< PositionType >
- Peak_() : BALL::GeometricFit::Peak_
- peak_list_ : BALL::Experiment< PeakListType >
- peak_set_ : BALL::GeometricFit
- PeakList() : BALL::PeakList< PT >
- peaklist_ : BALL::CreateSpectrumProcessor
- peaks_ : BALL::ShiftModel1D, BALL::ShiftModel2D
- PeakType : BALL::Experiment< PeakListType >, BALL::PeakList< PT >, BALL::Spectrum< DataT, PeakT, PositionT >
- peeling_order_ : BALL::RingAnalyser
- peelNextRing_() : BALL::RingAnalyser
- peelRings_() : BALL::RingAnalyser
- penalties_ : BALL::AssignBondOrderProcessor, BALL::FPTBondOrderStrategy
- Penalty : BALL::FPTBondOrderStrategy
- penalty : BALL::FPTBondOrderStrategy::Assignment_
- penalty_ : BALL::Constraint
- PENALTY_MOBILE : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- PENALTY_STATIC : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- penaltyOfNextSolution() : BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- pentakisDodecaeder() : BALL::TriangulatedSphere
- peptide_() : BALL::Peptides::PeptideBuilder
- PeptideBuilder() : BALL::Peptides::PeptideBuilder
- PeptideCapProcessor() : BALL::PeptideCapProcessor
- PeptideDialog() : BALL::VIEW::PeptideDialog
- performRequiredUpdates_() : BALL::ForceField
- Period : BALL::Element
- periodic_boundary : BALL::ForceField
- PERIODIC_BOX_ADD_SOLVENT : BALL::PeriodicBoundary::Default, BALL::PeriodicBoundary::Option
- PERIODIC_BOX_DISTANCE : BALL::PeriodicBoundary::Default, BALL::PeriodicBoundary::Option
- PERIODIC_BOX_ENABLED : BALL::PeriodicBoundary::Default, BALL::PeriodicBoundary::Option
- PERIODIC_BOX_LOWER : BALL::PeriodicBoundary::Default, BALL::PeriodicBoundary::Option
- PERIODIC_BOX_SOLVENT_FILE : BALL::PeriodicBoundary::Default, BALL::PeriodicBoundary::Option
- PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE : BALL::PeriodicBoundary::Default, BALL::PeriodicBoundary::Option
- PERIODIC_BOX_UPPER : BALL::PeriodicBoundary::Default, BALL::PeriodicBoundary::Option
- PERIODIC_WATER_FILE : BALL::PeriodicBoundary::Default, BALL::PeriodicBoundary::Option
- PeriodicBoundary() : BALL::PeriodicBoundary
- periodicBoundaryClicked() : BALL::VIEW::AmberConfigurationDialog, BALL::VIEW::CharmmConfigurationDialog
- permutation : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >::QuickBBState
- PersistenceManager() : BALL::PersistenceManager
- PersistentObject() : BALL::PersistentObject
- persistentRead() : BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::Composite, BALL::CrystalInfo, BALL::Fragment, BALL::Molecule, BALL::NamedProperty, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::PDBInfo, BALL::PDBRecords, BALL::PersistentObject, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, BALL::System, BALL::TVector2< T >, BALL::VIEW::Stage::Material
- persistentWrite() : BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::Composite, BALL::CrystalInfo, BALL::Fragment, BALL::Molecule, BALL::NamedProperty, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::PDBInfo, BALL::PDBRecords, BALL::PersistentObject, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, BALL::System, BALL::TVector2< T >, BALL::VIEW::Stage::Material
- PERSPECTIVE : BALL::VIEW::Camera
- PharmacophoreConstraint : BALL::GridBasedScoring, BALL::PharmacophoreConstraint, BALL::ScoringFunction
- phase : BALL::AmberTorsion::SingleAmberTorsion, BALL::CharmmTorsion::SingleCharmmTorsion, BALL::CosineTorsion::SingleValues, BALL::QuadraticImproperTorsion::Values, BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- phe_pressed() : BALL::VIEW::PeptideDialog
- phi_ : BALL::GeometricFit::RotationAngles_, BALL::Peptides::AminoAcidDescriptor, BALL::ResidueRotamerSet
- phi_grid : BALL::FDPB
- PHI_MAX : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- PHI_MIN : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- phis_ : BALL::MMFF94ESParameters
- PHOSPHORUS : BALL::Element
- PI : BALL::Constant
- pi_ : BALL::PoseClustering
- pick_select_ : BALL::VIEW::PickingMode
- picking_mode_ : BALL::VIEW::GLRenderer
- PickingMode() : BALL::VIEW::PickingMode
- pickObject() : BALL::VIEW::RTfactRenderer
- pickObjects() : BALL::VIEW::GLRenderer, BALL::VIEW::Renderer, BALL::VIEW::RenderSetup, BALL::VIEW::RTfactRenderer, BALL::VIEW::Scene
- pickObjects1() : BALL::VIEW::GLRenderer
- pickObjects2() : BALL::VIEW::GLRenderer
- pickParent_() : BALL::VIEW::PickingMode, BALL::VIEW::Scene
- PIECEWISE_POLYNOMIAL : BALL::RDFSection
- PiecewiseFunction() : BALL::PiecewiseFunction
- PiecewisePolynomial() : BALL::PiecewisePolynomial
- PierottiCavFreeEnergyProcessor() : BALL::PierottiCavFreeEnergyProcessor
- pilp : BALL::MMFF94AtomType
- pixel_buffer_ : BALL::VIEW::GLOffscreenTarget
- PixelFormat() : BALL::VIEW::PixelFormat
- placePeptideBondH_() : BALL::AddHydrogenProcessor
- placeSubstituent_() : BALL::SDGenerator
- PLANAR_FRAMEBUFFER : BALL::VIEW::PixelFormat
- planarAtom_() : BALL::GAFFTypeProcessor
- planBackward_ : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- planCalculated_ : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- PLANCK : BALL::Constant
- PLANE : BALL::VIEW::GridVisualisation
- plane_ : BALL::VIEW::SetClippingPlane
- plane_to_item_ : BALL::VIEW::GeometricControl
- PlaneMap : BALL::MMFF94PlaneParameters
- planForward_ : BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >
- PLATINUM : BALL::Element
- plot() : BALL::VIEW::SDWidget
- PLP() : BALL::PLP
- PLPScoring() : BALL::PLPScoring
- PLSModel() : BALL::QSAR::PLSModel
- pluginChanged() : BALL::VIEW::PluginDialog
- PluginDialog() : BALL::VIEW::PluginDialog
- PluginDirectoryModel() : BALL::VIEW::PluginDirectoryModel
- PluginDirMap : BALL::PluginManager
- PluginManager() : BALL::PluginManager
- PluginModel() : BALL::VIEW::PluginModel
- pluginsLoaded() : BALL::VIEW::PluginModel
- PLUMBUM : BALL::Element
- plus_ : BALL::DSN6File
- PLUTONIUM : BALL::Element
- Pm : BALL::Element
- Po : BALL::Element
- Point() : BALL::VIEW::Point
- point : BALL::RSComputer::ProbePosition, BALL::SESSingularityCleaner::ProbeIntersection
- point_ : BALL::SASVertex, BALL::SESTriangulator, BALL::SESVertex, BALL::TBox3< T >, BALL::TrianglePoint, BALL::VIEW::ClippingPlane, BALL::VIEW::GridVisualisation
- point_ptr_ : BALL::VIEW::Sphere
- pointer : BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ForwardIterator< Container, DataType, Position, Traits >, BALL::HashSet< Key >, BALL::RandomAccessIterator< Container, DataType, Position, Traits >, BALL::String, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::VIEW::CompositeManager
- pointer_list_ : BALL::PersistenceManager
- pointer_map_ : BALL::PersistenceManager
- PointerList : BALL::PersistenceManager
- PointerMap : BALL::PersistenceManager
- PointerType : BALL::HashMap< Key, T >, BALL::HashSet< Key >, BALL::PyColorRGBAVector, BALL::PyCompositeList, BALL::PyDatasetVector, BALL::PyIndexList
- PointIterator : BALL::TriangulatedSurface
- points : BALL::VIEW::GridVisualisation
- points_ : BALL::TriangulatedSurface
- PointType : BALL::TContourLine< T >, BALL::TContourSurface< T >
- PointVector : BALL::RMSDMinimizer
- POL_ES_THRESHOLD : BALL::Polarity
- POLAK_RIBIERE : BALL::ConjugateGradientMinimizer
- POLAR : BALL::FresnoTypes, BALL::SLICKEnergy::Default, BALL::SLICKEnergy::Option, BALL::SLICKScore::Default, BALL::SLICKScore::Option
- POLAR_AVG : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- POLAR_CHARGE_RULES : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- POLAR_FOCUS_GRID_AROUND_LIGAND : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- POLAR_GB : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- POLAR_METHOD : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- POLAR_OVERWRITE_CHARGES : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- POLAR_OVERWRITE_RADII : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- POLAR_RADIUS_RULES : BALL::PolarSolvation::Default, BALL::PolarSolvation::Option
- Polarity() : BALL::Polarity
- PolarSolvation() : BALL::PolarSolvation
- PolarVdWSurface() : BALL::PolarVdWSurface
- POLONIUM : BALL::Element
- polymer_class : BALL::NMRStarFile::MonomericPolymer
- pool_ : BALL::SmartsMatcher
- pools_ : BALL::GeneticAlgorithm
- pop_back() : BALL::PDBRecords, BALL::String
- popRepresentationToUpdate() : BALL::VIEW::RepresentationManager
- populateContextMenu() : BALL::VIEW::EditMode, BALL::VIEW::InteractionMode, BALL::VIEW::InteractionModeManager, BALL::VIEW::MoveMode
- POPULATION : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- POPULATION_NUMBER : BALL::EvolutionaryDocking::Default, BALL::EvolutionaryDocking::Option
- population_size_ : BALL::GeneticAlgorithm
- PopUpID : BALL::VIEW::MainControl
- port_ : BALL::TCPServer, BALL::VIEW::ServerWidget::BALLViewServer
- pos_C : BALL::HBondProcessor::ResidueData
- pos_H : BALL::HBondProcessor::ResidueData
- pos_N : BALL::HBondProcessor::ResidueData
- pos_O : BALL::HBondProcessor::ResidueData
- posbridges_ : BALL::SecondaryStructureProcessor
- PoseClustering() : BALL::PoseClustering
- PoseList : BALL::GridAnalysis
- PosePointer() : BALL::PoseClustering::PosePointer
- poses : BALL::PoseClustering::ClusterProperties
- poses_ : BALL::PoseClustering
- Position : BALL::Peak< PositionType >, BALL::PeakList< PT >
- position : BALL::HMOFile::HMOCharge, BALL::MOL2File::AtomStruct, BALL::MOLFile::AtomStruct
- position_ : BALL::Atom, BALL::Composite::CompositeIteratorTraits, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::Enumerator< Container, SiteIterator, Variant >, BALL::HashSet< Key >::IteratorTraits, BALL::Peak< PositionType >, BALL::VIEW::LightSource
- position_data_size : BALL::TRRFile::TRRHeader
- POSITION_VALUE_NA : BALL::NMRStarFile
- POSITIONAL : BALL::VIEW::LightSource
- PositionColorProcessor() : BALL::VIEW::PositionColorProcessor
- PositionType : BALL::Spectrum< DataT, PeakT, PositionT >
- positionTypeChanged() : BALL::VIEW::LightSettings
- PositivePolarVdWSurface() : BALL::PositivePolarVdWSurface
- PositiveVdWSurface() : BALL::PositiveVdWSurface
- post_dock_optimization_ : BALL::DockProblem
- POST_OPTIMIZATION_STEP_WIDTH : BALL::IMGDock::Default, BALL::IMGDock::Option
- POST_OPTIMIZATION_STEPS : BALL::IMGDock::Default, BALL::IMGDock::Option
- Postcondition() : BALL::Exception::Postcondition
- postorder() : BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- PostOrderFolding() : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- postProcessAtomTypes_() : BALL::GAFFTypeProcessor
- postprocessHelices_() : BALL::PDBFile
- postprocessRandomCoils_() : BALL::PDBFile
- postprocessSheetsTurns_() : BALL::PDBFile
- postprocessSSBonds_() : BALL::PDBFile
- POTASSIUM : BALL::Element
- Potential1210() : BALL::Potential1210
- potential_energy_ : BALL::SnapShot
- potential_grid_ : BALL::VIEW::FieldLineCreator
- pov_nr_ : BALL::VIEW::Scene
- POV_RENDERER : BALL::VIEW::RenderSetup
- POVColorRGBA() : BALL::VIEW::POVRenderer
- POVFinish() : BALL::VIEW::POVRenderer
- POVRenderer() : BALL::VIEW::POVRenderer
- POVVector3() : BALL::VIEW::POVRenderer
- PQ_Entry_ : BALL::AssignBondOrderProcessor
- Pr : BALL::Element
- PRASEODYMIUM : BALL::Element
- pre_translation_a_ : BALL::GeometricFit
- pre_translation_b_ : BALL::GeometricFit
- preassignPenaltyClasses_() : BALL::AssignBondOrderProcessor
- precalculateGrids() : BALL::GridBasedScoring
- PreciseTime() : BALL::PreciseTime
- PRECISION : BALL::BinaryFingerprintMethods::Default, BALL::BinaryFingerprintMethods::Option
- precision_ : BALL::TRRFile
- precisionBoxChanged() : BALL::VIEW::DisplayProperties
- precisionSliderChanged() : BALL::VIEW::DisplayProperties
- precomputeAtomBijection_() : BALL::PoseClustering
- precomputeAtomProperties_() : BALL::GAFFTypeProcessor
- precomputeBondLengthPenalties_() : BALL::AssignBondOrderProcessor
- precomputeBondProperties_() : BALL::GAFFTypeProcessor
- preComputeBonds_() : BALL::HBondProcessor
- Precondition() : BALL::Exception::Precondition
- predecessor() : BALL::RingAnalyser::Ring
- predicate : BALL::ExpressionParser::SyntaxTree
- predicate_ : BALL::CompositeIteratorTraits, BALL::ExpressionTree
- predict() : BALL::QSAR::ALLModel, BALL::QSAR::GPModel, BALL::QSAR::KernelModel, BALL::QSAR::LDAModel, BALL::QSAR::LinearModel, BALL::QSAR::LogitModel, BALL::QSAR::Model, BALL::QSAR::NBModel, BALL::QSAR::SNBModel
- predicted_affinities_ : BALL::Rescoring
- PREDICTION_METHOD : BALL::HBondProcessor::Default, BALL::HBondProcessor::Option
- PredictionConfiguration() : BALL::QSAR::PredictionConfiguration
- predictions : BALL::ScoringOptimizer::Result
- Preferences() : BALL::VIEW::Preferences
- preferences_ : BALL::VIEW::DisplayProperties, BALL::VIEW::PyWidget
- preferences_action_ : BALL::VIEW::MainControl
- preferences_dialog_ : BALL::VIEW::MainControl
- preferences_file_ : BALL::VIEW::MainControl
- PreferencesEntry() : BALL::VIEW::PreferencesEntry
- PreferencesObject() : BALL::PreferencesObject
- prefix : BALL::LogStreamBuf::StreamStruct
- prefix_ : BALL::RuleEvaluator, BALL::VIEW::DownloadPDBFile
- preorder() : BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
- prepare() : BALL::StructurePreparer
- prepare_() : BALL::SDGenerator
- prepareBufferedRendering() : BALL::VIEW::BufferedRenderer, BALL::VIEW::CudaVolumeRenderer, BALL::VIEW::RTfactRenderer
- prepareGridTextures() : BALL::VIEW::RenderSetup, BALL::VIEW::Scene
- prepareRendering() : BALL::VIEW::GLOffscreenTarget, BALL::VIEW::RenderTarget, BALL::VIEW::TRenderWindow< taPixelDatatype >
- prepareUpscaling() : BALL::VIEW::GLOffscreenTarget
- prepend() : BALL::AtomContainer, BALL::Chain, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, BALL::System
- prependChild() : BALL::Composite
- PRERELEASE : BALL::VersionInfo
- pres_size : BALL::TRRFile::TRRHeader
- PRESSURE : BALL::PierottiCavFreeEnergyProcessor::Default, BALL::PierottiCavFreeEnergyProcessor::Option, BALL::ReissCavFreeEnergyProcessor::Default, BALL::ReissCavFreeEnergyProcessor::Option
- prev_shift_val_ : BALL::ShiftedLVMMMinimizer
- primitive_manager_ : BALL::VIEW::MainControl
- PrincipalMomentOfInertia() : BALL::PrincipalMomentOfInertia
- PrincipalMomentOfInertiaX() : BALL::PrincipalMomentOfInertiaX
- PrincipalMomentOfInertiaY() : BALL::PrincipalMomentOfInertiaY
- PrincipalMomentOfInertiaZ() : BALL::PrincipalMomentOfInertiaZ
- print() : BALL::VIEW::PixelFormat
- print_expected : BALL::QSAR::PredictionConfiguration
- PRINT_TIMING : BALL::FDPB::Default, BALL::FDPB::Option
- printAPS() : BALL::GAFFCESParser::APSMatcher
- printCluster_() : BALL::PoseClustering
- printClusters() : BALL::PoseClustering
- printClusterScores() : BALL::PoseClustering
- printCursorPosition_() : BALL::VIEW::PyWidget
- printEnergy() : BALL::EnergyMinimizer
- printFragments() : BALL::IMGDock
- printHelp() : BALL::CommandlineParser
- printMatrix() : BALL::QSAR::QSARData, BALL::ScoringOptimizer
- printResult() : BALL::GridBasedScoring, BALL::ScoringFunction
- printResults() : BALL::IMGDock
- printScene() : BALL::VIEW::Scene
- printSelectionInfos() : BALL::VIEW::MainControl
- printToolInfo() : BALL::CommandlineParser
- printUCK() : BALL::UCK
- printVariables_() : BALL::PoseClustering
- priority_queue_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
- pro_pressed() : BALL::VIEW::PeptideDialog
- probabilities_ : BALL::GeneticAlgorithm
- probe_group_ : BALL::GridAnalysis
- probe_intersections_ : BALL::SESSingularityCleaner
- PROBE_LAYER_RADIUS : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- probe_positions_ : BALL::RSComputer
- PROBE_RADIUS : BALL::FDPB::Default, BALL::FDPB::Option, BALL::NonpolarSolvation::Default, BALL::NonpolarSolvation::Option, BALL::NumericalSAS::Default, BALL::NumericalSAS::Option, BALL::PCMCavFreeEnergyProcessor::Default, BALL::PCMCavFreeEnergyProcessor::Option, BALL::PierottiCavFreeEnergyProcessor::Default, BALL::PierottiCavFreeEnergyProcessor::Option, BALL::ReissCavFreeEnergyProcessor::Default, BALL::ReissCavFreeEnergyProcessor::Option, BALL::UhligCavFreeEnergyProcessor::Default, BALL::UhligCavFreeEnergyProcessor::Option
- probe_radius_ : BALL::ReducedSurface, BALL::SurfaceProcessor
- PROBE_SPHERE_RADIUS : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- PROBE_SPHERE_RADIUS_HYDROGEN_FREE : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- probeRadiusChanged() : BALL::VIEW::ModelSettingsDialog
- ProbeStatus : BALL::RSComputer
- proceed() : BALL::DockingAlgorithm
- processEvent_() : BALL::VIEW::TestFramework
- processEvents() : BALL::VIEW::MainControl
- processMoveModeMouseEvents_() : BALL::VIEW::MoveMode
- processMultiMoleculeFile() : BALL::DockingAlgorithm
- processor_ : BALL::VIEW::AtomOverview
- processRequest() : BALL::PyServer
- processRotateModeMouseEvents_() : BALL::VIEW::RotateMode
- prod_ : BALL::DSN6File
- Product() : BALL::Product< First, Second, DataType >
- progress_bar_ : BALL::VIEW::DownloadElectronDensity, BALL::VIEW::DownloadPDBFile
- project_ : BALL::VIEW::HelpViewer, BALL::VIEW::ShowHelpMessage
- project_target_to_ring_plane_ : BALL::HaighMallionShiftProcessor
- projection_mode_ : BALL::VIEW::Camera
- ProjectionMode : BALL::VIEW::Camera
- projectionModeChanged() : BALL::VIEW::RenderSetup, BALL::VIEW::Scene
- prolineActivated() : BALL::VIEW::PeptideDialog
- prolineDeactivated() : BALL::VIEW::PeptideDialog
- PROMETHIUM : BALL::Element
- PropDeleteWidget() : BALL::VIEW::PropDeleteWidget
- PropEditorWidget() : BALL::VIEW::PropEditorWidget
- Properties : BALL::VIEW::Representation
- properties_ : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_, BALL::SmartsParser::SPAtom
- properties_real_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- properties_string_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- PropertiesForShift_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- Property : BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::Fragment, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::Protein, BALL::Residue, BALL::SDGenerator, BALL::SmartsParser::SPAtom::Property
- PROPERTY__3_PRIME : BALL::Nucleotide
- PROPERTY__5_PRIME : BALL::Nucleotide
- PROPERTY__ALWAYS_FRONT : BALL::VIEW::Representation
- PROPERTY__AMINO_ACID : BALL::Residue
- PROPERTY__ANISOTROPY_SHIFT : BALL::AnisotropyShiftProcessor
- PROPERTY__C_TERMINAL : BALL::Residue
- PROPERTY__CYCLIC : BALL::Residue
- PROPERTY__EF_SHIFT : BALL::EFShiftProcessor
- PROPERTY__EHS_SHIFT : BALL::EmpiricalHSShiftProcessor
- PROPERTY__EXPERIMENTAL__SHIFT : BALL::ShiftModule
- PROPERTY__HAS_SSBOND : BALL::Residue
- PROPERTY__HBOND_SHIFT : BALL::HBondShiftProcessor
- PROPERTY__HETATM : BALL::PDBAtom
- PROPERTY__IS_COORDINATE_SYSTEM : BALL::VIEW::Representation
- PROPERTY__N_TERMINAL : BALL::Residue
- PROPERTY__NON_STANDARD : BALL::Residue
- PROPERTY__NUCLEOTIDE : BALL::Nucleotide
- PROPERTY__RANDOM_COIL_SHIFT : BALL::RandomCoilShiftProcessor
- PROPERTY__RING_CURRENT_SHIFT : BALL::HaighMallionShiftProcessor, BALL::JohnsonBoveyShiftProcessor
- PROPERTY__SHIFT : BALL::ShiftModule
- PROPERTY__WATER : BALL::Residue
- property_files_ : BALL::EmpiricalHSShiftProcessor
- property_pairs_ : BALL::EmpiricalHSShiftProcessor
- PropertyEditor() : BALL::VIEW::PropertyEditor
- PropertyError() : BALL::QSAR::Exception::PropertyError
- PropertyManager() : BALL::PropertyManager
- PropertyType : BALL::SmartsParser::SPAtom
- PROTACTINIUM : BALL::Element
- Protein() : BALL::Protein
- protein_ : BALL::Rescoring1D, BALL::VIEW::PeptideDialog
- PROTEIN_A : BALL::GeometricFit
- PROTEIN_B : BALL::GeometricFit
- ProteinIndex : BALL::GeometricFit
- ProteinIteratorTraits() : BALL::ProteinIteratorTraits
- proteinname_ : BALL::Peptides::PeptideBuilder
- protomode() : BALL::VIEW::ExportGeometryDialog
- proton_list_ : BALL::AnisotropyShiftProcessor, BALL::JohnsonBoveyShiftProcessor
- PROTON_MASS : BALL::Constant
- proxyEnabled() : BALL::VIEW::NetworkPreferences
- proxyModeChanged() : BALL::VIEW::NetworkPreferences
- prune() : BALL::TreeWidthImplementation< UndirectedGraph >::QuickBB< Lowerbound, Upperbound >
- PSEUDO_ATOMS_INIFile : BALL::Peptides::NameConverter::Default, BALL::Peptides::NameConverter::Option
- pseudo_conventions_ : BALL::Peptides::NameConverter
- pseudo_conversion_table_ : BALL::Peptides::NameConverter
- psi_ : BALL::GeometricFit::RotationAngles_, BALL::Peptides::AminoAcidDescriptor, BALL::ResidueRotamerSet
- PSI_MAX : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- PSI_MIN : BALL::GeometricFit::Default, BALL::GeometricFit::Option
- Pt : BALL::Element
- PTE_() : BALL::PTE_
- PTEDialog() : BALL::VIEW::PTEDialog
- ptr_ : BALL::TContourSurface< T >::Cube
- Pu : BALL::Element
- PubChemDialog() : BALL::VIEW::PubChemDialog
- PubChemDownloader() : BALL::PubChemDownloader
- PURE_DOUBLE_BOND : BALL::GAFFCESParser::APSMatcher
- PURE_DOUBLE_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
- PURE_SINGLE_BOND : BALL::GAFFCESParser::APSMatcher
- PURE_SINGLE_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
- push() : BALL::RingPerceptionProcessor::PathMessage_
- push_back() : BALL::PDBRecords, BALL::String
- pushbackNCS() : BALL::CrystalInfo
- pushBackNormal() : BALL::TSurface< T >
- pushBackTriangle() : BALL::TSurface< T >
- pushBackVertex() : BALL::TSurface< T >
- pushCFS_() : BALL::SDGenerator
- put() : BALL::PersistenceManager, BALL::TextPersistenceManager, BALL::XDRPersistenceManager
- putbackLine() : BALL::QSAR::ConfigIO
- PW_GAUSSIAN_WIDTH : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- PW_MAX_DISTANCE : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- PW_SQUARE_WELL : BALL::BindingPocketProcessor::Default, BALL::BindingPocketProcessor::Option
- PyCAPIKernel() : BALL::PyCAPIKernel
- PyColorRGBAVector() : BALL::PyColorRGBAVector
- PyCompositeList() : BALL::PyCompositeList
- PyDatasetVector() : BALL::PyDatasetVector
- PyIndexList() : BALL::PyIndexList
- PyKernel() : BALL::PyKernel
- PyServer() : BALL::PyServer
- python_format : BALL::VIEW::PythonHighlighter
- python_keywords : BALL::VIEW::PythonHighlighter
- python_line_ : BALL::VIEW::TestFramework
- python_patterns : BALL::VIEW::PythonHighlighter
- python_settings_ : BALL::VIEW::PyWidget
- PythonHighlighter() : BALL::VIEW::PythonHighlighter
- PythonSettings() : BALL::VIEW::PythonSettings
- PythonValidator() : BALL::VIEW::PythonValidator
- PyWidget() : BALL::VIEW::PyWidget