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BALL::SDGenerator Member List

This is the complete list of members for BALL::SDGenerator, including all inherited members.

ASSEMBLED enum value | BALL::SDGenerator |
assembleSD_() | BALL::SDGenerator | protected
attachBridged_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system) | BALL::SDGenerator | protected
attachCore_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system, float x_start) | BALL::SDGenerator | protected
attachFused_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system) | BALL::SDGenerator | protected
attachSpiro_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system) | BALL::SDGenerator | protected
attachTemplate_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system) | BALL::SDGenerator | protected
buildOpenPolygon_(RingAnalyser::Ring &ring, Position first_anchor_index, Position second_anchor_index) | BALL::SDGenerator | protected
buildRegularPolygon_(RingAnalyser::Ring &ring, Position first_anchor_index, bool clockwise) | BALL::SDGenerator | protected
chains_ | BALL::SDGenerator | protected
checkOverlap_(Atom *atom) | BALL::SDGenerator | protected
clear() | BALL::SDGenerator |
compareChains_(const vector< Atom * > &x, const vector< Atom * > &y) | BALL::SDGenerator | protected static
computeAdjacencyMatrix_(std::vector< Atom * > &chain, std::vector< bool > &result) | BALL::SDGenerator | protected
computeAngularDemand_(Atom *seed) | BALL::SDGenerator | protected
computeAngularSeparation_(Atom *seed) | BALL::SDGenerator | protected
computeCFS_(Vector3 const &input) | BALL::SDGenerator | protected
computeCoreCFS_(RingAnalyser::Ring &ring, bool clockwise) | BALL::SDGenerator | protected
computeShelleyPriorities_() | BALL::SDGenerator | protected
constructRingSystem_(Position current_ring_system) | BALL::SDGenerator | protected
CORE_CHAIN enum value | BALL::SDGenerator |
DEPOSITED enum value | BALL::SDGenerator |
depositPFU_(Atom *seed_atom, Atom *next_neighbour) | BALL::SDGenerator | protected
EDGE enum value | BALL::SDGenerator |
EQAS enum value | BALL::SDGenerator |
findFloydWarshallPath_(std::vector< int > &path, std::vector< Index > &next, Size remaining_atoms, Position i, Position j, std::list< Index > &output) | BALL::SDGenerator | protected
FIRST_SDGENERATOR_PROPERTY enum value | BALL::SDGenerator |
FXAS enum value | BALL::SDGenerator |
generateSD(System &molecule_sys) | BALL::SDGenerator |
getBackupCFS_(Atom const *, bool hi) | BALL::SDGenerator | protected
getCFS_(Atom const *atom, bool hi) | BALL::SDGenerator | protected
HEAD enum value | BALL::SDGenerator |
IN_RING enum value | BALL::SDGenerator |
INITIALIZED_HEAD_CFS enum value | BALL::SDGenerator |
LAST_SDGENERATOR_PROPERTY enum value | BALL::SDGenerator |
options | BALL::SDGenerator |
placeSubstituent_(Atom *seed, Atom *head, Atom *next) | BALL::SDGenerator | protected
prepare_() | BALL::SDGenerator | protected
Property enum name | BALL::SDGenerator |
pushCFS_(Atom *atom) | BALL::SDGenerator | protected
redraw_queue_ | BALL::SDGenerator | protected
ring_analyser_ | BALL::SDGenerator | protected
ringIsClockwise_(const RingAnalyser::Ring &ring, Index start_index=0) const | BALL::SDGenerator | protected
SDGenerator(bool show_hydrogens=false) | BALL::SDGenerator |
sequenceSubstituents_(Atom *seed) | BALL::SDGenerator | protected
setCFS_(Atom *atom, Angle cfs, bool high) | BALL::SDGenerator | protected
setDefaultOptions() | BALL::SDGenerator |
smoothCFSAngle_(Atom *seed) | BALL::SDGenerator | protected
system_ | BALL::SDGenerator | protected
treatChains_() | BALL::SDGenerator | protected
ZAG enum value | BALL::SDGenerator |
ZIG enum value | BALL::SDGenerator |
~SDGenerator() | BALL::SDGenerator | virtual