Package: trnascan-se
Version: 2.0.12+ds-2
Architecture: arm64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 817
Depends: libc6 (>= 2.34), perl:any, trnascan-se-common (= 2.0.12+ds-2), infernal
Section: non-free/science
Priority: optional
Homepage: https://lowelab.ucsc.edu/tRNAscan-SE
Description: detection of transfer RNA genes in genomic sequence
 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
