# Cobbler Sequence

COBBLER aligns a set of Blocks with a protein sequence and embeds a consensus representation of the Blocks in the sequence, which can then be used to search sequence databases using BLAST, and other sequence searching programs. Block Maker makes a COBBLER sequence automatically, but this page can be used if you want to embed your blocks in a different sequence. If you need to convert another multiple alignment to BLOCKS format, use the Multiple Alignment Processor or the Block Formatter.

Enter your Blocks in BLOCKS format:

Enter your protein sequence in FASTA format:

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Page last modified on <MODIFICATION_DATE>Dec 1999</MODIFICATION_DATE>